EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000015462 (Gene tree)
Gene ID: -
Gene Symbol: A1CF
Alias: ACF|ACF64|ACF65|APOBEC1CF|ASP
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 55008 bases
Position: chrscaffold_10:32140766-32195773
Accession: 100660854
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000012959	DND1_DSRM	PF14709.7	1.3e-24	1	1
ENSLAFP00000019574	DND1_DSRM	PF14709.7	1.3e-24	1	1
ENSLAFP00000012959	RRM_1	PF00076.22	7.8e-41	1	3
ENSLAFP00000012959	RRM_1	PF00076.22	7.8e-41	2	3
ENSLAFP00000012959	RRM_1	PF00076.22	7.8e-41	3	3
ENSLAFP00000019574	RRM_1	PF00076.22	7.8e-41	1	3
ENSLAFP00000019574	RRM_1	PF00076.22	7.8e-41	2	3
ENSLAFP00000019574	RRM_1	PF00076.22	7.8e-41	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000015463	A1CF-202	1785	XM_003409024	ENSLAFP00000012959	595 (aa)	XP_003409072	G3TF75
ENSLAFT00000029066	A1CF-201	1788	-	ENSLAFP00000019574	595 (aa)	-	G3TVG6

Gene Model

Click here to download ENSLAFG00000015462's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000015462's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000015462	A1CF	92	50.628	ENSLAFG00000011998	RBM47	83	54.403
ENSLAFG00000015462	A1CF	51	53.571	ENSLAFG00000018172	SYNCRIP	58	51.692
ENSLAFG00000015462	A1CF	69	70.701	ENSLAFG00000015448	RBM46	88	70.701

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000015462	A1CF	100	94.454	ENSG00000148584	A1CF	100	97.512	Homo_sapiens
ENSLAFG00000015462	A1CF	100	73.466	ENSAPOG00000008259	a1cf	100	72.305	Acanthochromis_polyacanthus
ENSLAFG00000015462	A1CF	100	93.277	ENSAMEG00000000523	A1CF	100	93.782	Ailuropoda_melanoleuca
ENSLAFG00000015462	A1CF	100	76.835	ENSACIG00000008632	a1cf	100	76.509	Amphilophus_citrinellus
ENSLAFG00000015462	A1CF	100	74.304	ENSAOCG00000023744	a1cf	96	82.319	Amphiprion_ocellaris
ENSLAFG00000015462	A1CF	100	75.286	ENSAPEG00000009537	a1cf	100	74.959	Amphiprion_percula
ENSLAFG00000015462	A1CF	100	76.873	ENSATEG00000013720	a1cf	100	76.221	Anabas_testudineus
ENSLAFG00000015462	A1CF	100	88.926	ENSAPLG00000002964	A1CF	100	88.591	Anas_platyrhynchos
ENSLAFG00000015462	A1CF	100	83.389	ENSACAG00000015269	A1CF	100	83.389	Anolis_carolinensis
ENSLAFG00000015462	A1CF	100	93.445	ENSANAG00000019974	A1CF	100	93.445	Aotus_nancymaae
ENSLAFG00000015462	A1CF	100	74.346	ENSACLG00000017428	a1cf	100	74.510	Astatotilapia_calliptera
ENSLAFG00000015462	A1CF	100	75.372	ENSAMXG00000018180	a1cf	100	74.545	Astyanax_mexicanus
ENSLAFG00000015462	A1CF	100	93.109	ENSBTAG00000021195	A1CF	100	93.956	Bos_taurus
ENSLAFG00000015462	A1CF	100	95.126	ENSCJAG00000005045	A1CF	100	95.126	Callithrix_jacchus
ENSLAFG00000015462	A1CF	100	93.109	ENSCAFG00000015581	A1CF	100	93.782	Canis_familiaris
ENSLAFG00000015462	A1CF	100	93.109	ENSCAFG00020026421	A1CF	100	93.782	Canis_lupus_dingo
ENSLAFG00000015462	A1CF	100	93.613	ENSCHIG00000020411	A1CF	100	93.613	Capra_hircus
ENSLAFG00000015462	A1CF	95	94.149	ENSTSYG00000001755	A1CF	100	93.060	Carlito_syrichta
ENSLAFG00000015462	A1CF	100	82.407	ENSCAPG00000017386	A1CF	100	82.407	Cavia_aperea
ENSLAFG00000015462	A1CF	100	94.286	ENSCPOG00000009807	A1CF	100	94.286	Cavia_porcellus
ENSLAFG00000015462	A1CF	100	94.622	ENSCCAG00000018168	A1CF	100	94.622	Cebus_capucinus
ENSLAFG00000015462	A1CF	100	93.277	ENSCATG00000043715	A1CF	100	93.277	Cercocebus_atys
ENSLAFG00000015462	A1CF	100	93.792	ENSCLAG00000010424	A1CF	100	93.792	Chinchilla_lanigera
ENSLAFG00000015462	A1CF	100	94.622	ENSCSAG00000007032	A1CF	100	94.622	Chlorocebus_sabaeus
ENSLAFG00000015462	A1CF	98	88.983	ENSCHOG00000009089	A1CF	98	88.983	Choloepus_hoffmanni
ENSLAFG00000015462	A1CF	100	88.758	ENSCPBG00000026464	A1CF	100	88.591	Chrysemys_picta_bellii
ENSLAFG00000015462	A1CF	100	94.622	ENSCANG00000038032	A1CF	100	94.622	Colobus_angolensis_palliatus
ENSLAFG00000015462	A1CF	100	93.445	ENSCGRG00001017413	A1cf	100	93.445	Cricetulus_griseus_chok1gshd
ENSLAFG00000015462	A1CF	100	92.773	ENSCGRG00000017332	A1cf	100	92.773	Cricetulus_griseus_crigri
ENSLAFG00000015462	A1CF	100	75.788	ENSCSEG00000002361	a1cf	100	75.415	Cynoglossus_semilaevis
ENSLAFG00000015462	A1CF	100	75.407	ENSCVAG00000010520	a1cf	100	76.059	Cyprinodon_variegatus
ENSLAFG00000015462	A1CF	100	78.869	ENSDARG00000002968	a1cf	100	79.368	Danio_rerio
ENSLAFG00000015462	A1CF	100	94.622	ENSDNOG00000002829	A1CF	100	94.622	Dasypus_novemcinctus
ENSLAFG00000015462	A1CF	81	94.203	ENSETEG00000012527	A1CF	81	94.203	Echinops_telfairi
ENSLAFG00000015462	A1CF	100	95.477	ENSEASG00005012924	A1CF	100	95.477	Equus_asinus_asinus
ENSLAFG00000015462	A1CF	100	94.975	ENSECAG00000010424	A1CF	100	94.975	Equus_caballus
ENSLAFG00000015462	A1CF	78	80.514	ENSEEUG00000000013	A1CF	98	81.140	Erinaceus_europaeus
ENSLAFG00000015462	A1CF	100	80.033	ENSELUG00000003159	a1cf	100	79.867	Esox_lucius
ENSLAFG00000015462	A1CF	100	91.597	ENSFCAG00000011179	A1CF	100	91.933	Felis_catus
ENSLAFG00000015462	A1CF	100	86.074	ENSFALG00000013183	A1CF	100	85.738	Ficedula_albicollis
ENSLAFG00000015462	A1CF	100	91.765	ENSFDAG00000019371	A1CF	100	91.765	Fukomys_damarensis
ENSLAFG00000015462	A1CF	100	70.684	ENSFHEG00000019652	a1cf	96	83.594	Fundulus_heteroclitus
ENSLAFG00000015462	A1CF	100	72.607	ENSGMOG00000018943	a1cf	100	71.782	Gadus_morhua
ENSLAFG00000015462	A1CF	95	88.142	ENSGALG00000003765	A1CF	97	87.788	Gallus_gallus
ENSLAFG00000015462	A1CF	100	70.888	ENSGAFG00000014868	a1cf	100	71.382	Gambusia_affinis
ENSLAFG00000015462	A1CF	100	74.836	ENSGACG00000010241	a1cf	100	74.507	Gasterosteus_aculeatus
ENSLAFG00000015462	A1CF	94	88.277	ENSGAGG00000016508	A1CF	97	88.099	Gopherus_agassizii
ENSLAFG00000015462	A1CF	100	94.622	ENSGGOG00000009670	A1CF	100	94.622	Gorilla_gorilla
ENSLAFG00000015462	A1CF	100	75.856	ENSHBUG00000021959	a1cf	100	76.183	Haplochromis_burtoni
ENSLAFG00000015462	A1CF	100	93.950	ENSHGLG00000008955	A1CF	100	93.950	Heterocephalus_glaber_female
ENSLAFG00000015462	A1CF	100	93.277	ENSHGLG00100000518	A1CF	100	93.277	Heterocephalus_glaber_male
ENSLAFG00000015462	A1CF	100	70.358	ENSHCOG00000017669	a1cf	100	71.870	Hippocampus_comes
ENSLAFG00000015462	A1CF	89	83.799	ENSIPUG00000010367	a1cf	97	82.440	Ictalurus_punctatus
ENSLAFG00000015462	A1CF	100	77.398	ENSKMAG00000006568	a1cf	100	77.561	Kryptolebias_marmoratus
ENSLAFG00000015462	A1CF	99	76.835	ENSLBEG00000020994	a1cf	98	76.519	Labrus_bergylta
ENSLAFG00000015462	A1CF	100	82.638	ENSLACG00000008061	A1CF	100	82.137	Latimeria_chalumnae
ENSLAFG00000015462	A1CF	100	82.167	ENSLOCG00000006302	a1cf	100	82.167	Lepisosteus_oculatus
ENSLAFG00000015462	A1CF	100	93.445	ENSMFAG00000035948	A1CF	100	93.613	Macaca_fascicularis
ENSLAFG00000015462	A1CF	100	93.445	ENSMMUG00000007077	A1CF	100	93.613	Macaca_mulatta
ENSLAFG00000015462	A1CF	100	93.277	ENSMNEG00000031454	A1CF	100	93.277	Macaca_nemestrina
ENSLAFG00000015462	A1CF	100	94.454	ENSMLEG00000037223	A1CF	100	94.622	Mandrillus_leucophaeus
ENSLAFG00000015462	A1CF	100	74.632	ENSMAMG00000010402	a1cf	100	74.959	Mastacembelus_armatus
ENSLAFG00000015462	A1CF	100	77.833	ENSMZEG00005013245	a1cf	100	76.833	Maylandia_zebra
ENSLAFG00000015462	A1CF	100	88.107	ENSMGAG00000001507	A1CF	100	87.772	Meleagris_gallopavo
ENSLAFG00000015462	A1CF	100	92.773	ENSMAUG00000007422	A1cf	100	92.773	Mesocricetus_auratus
ENSLAFG00000015462	A1CF	100	93.144	ENSMICG00000003377	A1CF	100	93.311	Microcebus_murinus
ENSLAFG00000015462	A1CF	100	93.109	ENSMOCG00000021536	A1cf	100	93.109	Microtus_ochrogaster
ENSLAFG00000015462	A1CF	100	69.558	ENSMMOG00000009422	a1cf	100	69.885	Mola_mola
ENSLAFG00000015462	A1CF	92	89.762	ENSMODG00000016478	A1CF	98	90.485	Monodelphis_domestica
ENSLAFG00000015462	A1CF	100	72.667	ENSMALG00000012992	a1cf	100	71.167	Monopterus_albus
ENSLAFG00000015462	A1CF	100	92.101	MGP_CAROLIEiJ_G0022873	A1cf	100	92.101	Mus_caroli
ENSLAFG00000015462	A1CF	100	92.101	ENSMUSG00000052595	A1cf	99	94.595	Mus_musculus
ENSLAFG00000015462	A1CF	100	91.261	MGP_PahariEiJ_G0014366	A1cf	100	91.261	Mus_pahari
ENSLAFG00000015462	A1CF	100	91.765	MGP_SPRETEiJ_G0023792	A1cf	100	91.429	Mus_spretus
ENSLAFG00000015462	A1CF	100	88.403	ENSMPUG00000016971	A1CF	100	88.235	Mustela_putorius_furo
ENSLAFG00000015462	A1CF	100	93.613	ENSMLUG00000016071	A1CF	100	93.613	Myotis_lucifugus
ENSLAFG00000015462	A1CF	100	94.790	ENSNGAG00000015136	A1cf	100	94.790	Nannospalax_galili
ENSLAFG00000015462	A1CF	100	76.183	ENSNBRG00000001712	a1cf	100	76.509	Neolamprologus_brichardi
ENSLAFG00000015462	A1CF	100	95.126	ENSNLEG00000012028	A1CF	100	95.126	Nomascus_leucogenys
ENSLAFG00000015462	A1CF	94	88.988	ENSMEUG00000015909	A1CF	100	88.810	Notamacropus_eugenii
ENSLAFG00000015462	A1CF	88	83.619	ENSOPRG00000010667	A1CF	98	82.959	Ochotona_princeps
ENSLAFG00000015462	A1CF	100	76.509	ENSONIG00000019105	a1cf	100	76.020	Oreochromis_niloticus
ENSLAFG00000015462	A1CF	79	88.559	ENSOANG00000007360	A1CF	100	88.559	Ornithorhynchus_anatinus
ENSLAFG00000015462	A1CF	100	92.282	ENSOCUG00000011587	A1CF	100	92.450	Oryctolagus_cuniculus
ENSLAFG00000015462	A1CF	100	74.673	ENSORLG00000013342	a1cf	100	73.366	Oryzias_latipes
ENSLAFG00000015462	A1CF	100	75.204	ENSORLG00020000586	a1cf	100	74.388	Oryzias_latipes_hni
ENSLAFG00000015462	A1CF	100	75.041	ENSORLG00015018569	a1cf	100	74.551	Oryzias_latipes_hsok
ENSLAFG00000015462	A1CF	100	74.141	ENSOMEG00000013531	a1cf	100	73.322	Oryzias_melastigma
ENSLAFG00000015462	A1CF	100	93.277	ENSOGAG00000012884	A1CF	100	93.277	Otolemur_garnettii
ENSLAFG00000015462	A1CF	100	93.613	ENSOARG00000013695	A1CF	100	93.613	Ovis_aries
ENSLAFG00000015462	A1CF	97	93.068	ENSPPAG00000028115	A1CF	100	96.761	Pan_paniscus
ENSLAFG00000015462	A1CF	100	93.277	ENSPPRG00000012180	A1CF	100	93.613	Panthera_pardus
ENSLAFG00000015462	A1CF	100	93.277	ENSPTIG00000021223	A1CF	100	93.613	Panthera_tigris_altaica
ENSLAFG00000015462	A1CF	100	94.454	ENSPTRG00000002508	A1CF	100	94.454	Pan_troglodytes
ENSLAFG00000015462	A1CF	100	93.445	ENSPANG00000021988	A1CF	100	93.613	Papio_anubis
ENSLAFG00000015462	A1CF	100	80.200	ENSPKIG00000025176	a1cf	100	79.201	Paramormyrops_kingsleyae
ENSLAFG00000015462	A1CF	100	86.913	ENSPSIG00000010318	A1CF	100	86.745	Pelodiscus_sinensis
ENSLAFG00000015462	A1CF	88	71.429	ENSPMGG00000013359	a1cf	99	67.235	Periophthalmus_magnuspinnatus
ENSLAFG00000015462	A1CF	100	94.118	ENSPEMG00000015021	A1cf	100	94.118	Peromyscus_maniculatus_bairdii
ENSLAFG00000015462	A1CF	100	88.926	ENSPCIG00000002175	A1CF	100	88.758	Phascolarctos_cinereus
ENSLAFG00000015462	A1CF	100	76.710	ENSPFOG00000006683	a1cf	100	77.524	Poecilia_formosa
ENSLAFG00000015462	A1CF	100	76.547	ENSPFOG00000007437	-	100	77.362	Poecilia_formosa
ENSLAFG00000015462	A1CF	100	75.407	ENSPLAG00000000026	a1cf	100	76.221	Poecilia_latipinna
ENSLAFG00000015462	A1CF	100	75.407	ENSPLAG00000001210	-	100	76.221	Poecilia_latipinna
ENSLAFG00000015462	A1CF	100	69.281	ENSPMEG00000015529	-	100	70.098	Poecilia_mexicana
ENSLAFG00000015462	A1CF	100	68.137	ENSPMEG00000000921	a1cf	100	68.954	Poecilia_mexicana
ENSLAFG00000015462	A1CF	100	76.710	ENSPREG00000016298	a1cf	100	77.362	Poecilia_reticulata
ENSLAFG00000015462	A1CF	100	93.950	ENSPPYG00000002819	A1CF	100	93.950	Pongo_abelii
ENSLAFG00000015462	A1CF	79	74.419	ENSPCAG00000006463	A1CF	70	87.755	Procavia_capensis
ENSLAFG00000015462	A1CF	100	94.799	ENSPCOG00000024172	A1CF	100	94.799	Propithecus_coquereli
ENSLAFG00000015462	A1CF	100	77.162	ENSPNYG00000017944	a1cf	100	77.488	Pundamilia_nyererei
ENSLAFG00000015462	A1CF	100	80.629	ENSPNAG00000007704	a1cf	100	79.801	Pygocentrus_nattereri
ENSLAFG00000015462	A1CF	100	91.092	ENSRNOG00000033195	A1cf	100	91.092	Rattus_norvegicus
ENSLAFG00000015462	A1CF	100	88.107	ENSRBIG00000042892	A1CF	100	92.172	Rhinopithecus_bieti
ENSLAFG00000015462	A1CF	100	94.958	ENSRROG00000041398	A1CF	100	94.958	Rhinopithecus_roxellana
ENSLAFG00000015462	A1CF	100	94.958	ENSSBOG00000021930	A1CF	100	94.790	Saimiri_boliviensis_boliviensis
ENSLAFG00000015462	A1CF	100	89.430	ENSSHAG00000005096	A1CF	100	89.262	Sarcophilus_harrisii
ENSLAFG00000015462	A1CF	100	79.104	ENSSFOG00015011774	a1cf	100	78.773	Scleropages_formosus
ENSLAFG00000015462	A1CF	100	75.733	ENSSMAG00000013271	a1cf	100	75.244	Scophthalmus_maximus
ENSLAFG00000015462	A1CF	100	77.778	ENSSDUG00000013930	a1cf	100	76.617	Seriola_dumerili
ENSLAFG00000015462	A1CF	100	70.792	ENSSLDG00000004290	a1cf	100	70.462	Seriola_lalandi_dorsalis
ENSLAFG00000015462	A1CF	95	83.216	ENSSARG00000005940	A1CF	96	83.216	Sorex_araneus
ENSLAFG00000015462	A1CF	95	87.522	ENSSPUG00000006797	A1CF	95	87.522	Sphenodon_punctatus
ENSLAFG00000015462	A1CF	100	94.286	ENSSSCG00000010431	A1CF	100	94.286	Sus_scrofa
ENSLAFG00000015462	A1CF	100	87.793	ENSTGUG00000005090	A1CF	100	87.793	Taeniopygia_guttata
ENSLAFG00000015462	A1CF	100	75.693	ENSTRUG00000001982	a1cf	100	75.530	Takifugu_rubripes
ENSLAFG00000015462	A1CF	100	75.935	ENSTNIG00000003580	a1cf	100	75.772	Tetraodon_nigroviridis
ENSLAFG00000015462	A1CF	97	86.655	ENSTTRG00000013190	A1CF	95	86.655	Tursiops_truncatus
ENSLAFG00000015462	A1CF	100	92.605	ENSUAMG00000020065	A1CF	100	92.437	Ursus_americanus
ENSLAFG00000015462	A1CF	100	93.613	ENSUMAG00000011162	A1CF	100	93.613	Ursus_maritimus
ENSLAFG00000015462	A1CF	87	89.060	ENSVPAG00000006130	A1CF	86	89.060	Vicugna_pacos
ENSLAFG00000015462	A1CF	100	92.605	ENSVVUG00000002504	A1CF	100	92.605	Vulpes_vulpes
ENSLAFG00000015462	A1CF	100	78.167	ENSXETG00000006611	a1cf	100	77.833	Xenopus_tropicalis
ENSLAFG00000015462	A1CF	100	76.885	ENSXCOG00000003302	a1cf	100	77.213	Xiphophorus_couchianus
ENSLAFG00000015462	A1CF	100	78.033	ENSXMAG00000016703	a1cf	100	78.361	Xiphophorus_maculatus