EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000017247 (Gene tree)
Gene ID: -
Gene Symbol: YBX3
Alias: CSDA|CSDA1|ZONAB|dbpA
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 22605 bases
Position: chrscaffold_2:467667-490271
Accession: 100653714
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000014464	CSD	PF00313.22	2e-26	1	1
ENSLAFP00000018070	CSD	PF00313.22	4.2e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000037454	YBX3-201	1014	-	ENSLAFP00000018070	337 (aa)	-	G3TR62
ENSLAFT00000017250	YBX3-202	1107	-	ENSLAFP00000014464	368 (aa)	XP_003405656	G3TII2

Gene Model

Click here to download ENSLAFG00000017247's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000017247's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000017247	YBX3	89	44.828	ENSLAFG00000007597	YBX1	85	55.631
ENSLAFG00000017247	YBX3	76	44.118	ENSLAFG00000031170	-	100	47.710

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000017247	YBX3	100	91.935	ENSG00000060138	YBX3	100	91.398	Homo_sapiens
ENSLAFG00000017247	YBX3	97	88.483	ENSAMEG00000009393	YBX3	95	93.195	Ailuropoda_melanoleuca
ENSLAFG00000017247	YBX3	83	63.860	ENSAPLG00000003147	YBX3	100	67.361	Anas_platyrhynchos
ENSLAFG00000017247	YBX3	100	90.811	ENSANAG00000024492	-	100	88.919	Aotus_nancymaae
ENSLAFG00000017247	YBX3	100	85.714	ENSBTAG00000009663	YBX3	100	79.843	Bos_taurus
ENSLAFG00000017247	YBX3	72	89.706	ENSCJAG00000033824	-	95	89.706	Callithrix_jacchus
ENSLAFG00000017247	YBX3	100	92.432	ENSCJAG00000021660	-	100	90.541	Callithrix_jacchus
ENSLAFG00000017247	YBX3	83	91.815	ENSCAFG00000013401	YBX3	84	95.865	Canis_familiaris
ENSLAFG00000017247	YBX3	100	90.617	ENSCAFG00020006412	YBX3	100	90.617	Canis_lupus_dingo
ENSLAFG00000017247	YBX3	100	85.714	ENSCHIG00000010863	YBX3	100	85.054	Capra_hircus
ENSLAFG00000017247	YBX3	85	88.153	ENSTSYG00000004204	-	88	94.774	Carlito_syrichta
ENSLAFG00000017247	YBX3	100	56.098	ENSTSYG00000035821	-	97	79.464	Carlito_syrichta
ENSLAFG00000017247	YBX3	83	85.053	ENSCAPG00000015039	YBX3	93	88.811	Cavia_aperea
ENSLAFG00000017247	YBX3	87	84.589	ENSCPOG00000011329	YBX3	86	89.726	Cavia_porcellus
ENSLAFG00000017247	YBX3	100	91.667	ENSCCAG00000016469	YBX3	100	89.785	Cebus_capucinus
ENSLAFG00000017247	YBX3	100	90.885	ENSCATG00000034411	YBX3	100	90.617	Cercocebus_atys
ENSLAFG00000017247	YBX3	83	86.121	ENSCLAG00000016030	YBX3	94	89.860	Chinchilla_lanigera
ENSLAFG00000017247	YBX3	100	91.421	ENSCSAG00000008744	YBX3	100	90.885	Chlorocebus_sabaeus
ENSLAFG00000017247	YBX3	76	81.395	ENSCHOG00000011988	YBX3	54	88.889	Choloepus_hoffmanni
ENSLAFG00000017247	YBX3	86	75.517	ENSCPBG00000014147	YBX3	81	80.479	Chrysemys_picta_bellii
ENSLAFG00000017247	YBX3	87	87.797	ENSCANG00000036801	YBX3	94	94.237	Colobus_angolensis_palliatus
ENSLAFG00000017247	YBX3	94	87.025	ENSCGRG00001016148	Ybx3	100	87.534	Cricetulus_griseus_chok1gshd
ENSLAFG00000017247	YBX3	85	86.942	ENSCGRG00000004563	Ybx3	98	92.096	Cricetulus_griseus_crigri
ENSLAFG00000017247	YBX3	99	78.902	ENSDORG00000009103	Ybx3	81	94.056	Dipodomys_ordii
ENSLAFG00000017247	YBX3	83	80.986	ENSETEG00000002557	YBX3	99	84.155	Echinops_telfairi
ENSLAFG00000017247	YBX3	100	89.702	ENSEASG00005014726	YBX3	100	89.702	Equus_asinus_asinus
ENSLAFG00000017247	YBX3	100	92.683	ENSECAG00000013777	YBX3	100	92.683	Equus_caballus
ENSLAFG00000017247	YBX3	83	86.525	ENSEEUG00000010415	YBX3	100	92.254	Erinaceus_europaeus
ENSLAFG00000017247	YBX3	100	93.029	ENSFCAG00000027748	YBX3	100	94.102	Felis_catus
ENSLAFG00000017247	YBX3	83	62.324	ENSFALG00000003661	YBX3	100	64.111	Ficedula_albicollis
ENSLAFG00000017247	YBX3	86	79.730	ENSFDAG00000021192	YBX3	92	86.713	Fukomys_damarensis
ENSLAFG00000017247	YBX3	93	57.602	ENSGALG00000031890	YBX3	70	97.849	Gallus_gallus
ENSLAFG00000017247	YBX3	96	69.846	ENSGAGG00000017780	YBX3	81	79.452	Gopherus_agassizii
ENSLAFG00000017247	YBX3	100	91.689	ENSGGOG00000001352	YBX3	100	91.153	Gorilla_gorilla
ENSLAFG00000017247	YBX3	90	71.895	ENSHGLG00000014798	-	86	78.378	Heterocephalus_glaber_female
ENSLAFG00000017247	YBX3	81	74.088	ENSHGLG00000015495	-	100	70.317	Heterocephalus_glaber_female
ENSLAFG00000017247	YBX3	67	88.393	ENSHGLG00100003589	YBX3	87	65.157	Heterocephalus_glaber_male
ENSLAFG00000017247	YBX3	93	88.081	ENSSTOG00000032577	-	100	85.054	Ictidomys_tridecemlineatus
ENSLAFG00000017247	YBX3	85	83.217	ENSSTOG00000002108	-	88	88.112	Ictidomys_tridecemlineatus
ENSLAFG00000017247	YBX3	87	63.514	ENSJJAG00000014239	Ybx3	96	85.227	Jaculus_jaculus
ENSLAFG00000017247	YBX3	100	91.398	ENSMFAG00000039369	YBX3	100	91.129	Macaca_fascicularis
ENSLAFG00000017247	YBX3	95	87.227	ENSMMUG00000022469	YBX3	91	94.237	Macaca_mulatta
ENSLAFG00000017247	YBX3	100	91.129	ENSMNEG00000045109	YBX3	100	90.860	Macaca_nemestrina
ENSLAFG00000017247	YBX3	95	82.000	ENSMLEG00000033618	YBX3	81	94.056	Mandrillus_leucophaeus
ENSLAFG00000017247	YBX3	70	80.272	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
ENSLAFG00000017247	YBX3	95	85.938	ENSMAUG00000012185	Ybx3	92	93.197	Mesocricetus_auratus
ENSLAFG00000017247	YBX3	100	93.784	ENSMICG00000038002	-	100	93.784	Microcebus_murinus
ENSLAFG00000017247	YBX3	100	64.402	ENSMICG00000031459	-	78	81.429	Microcebus_murinus
ENSLAFG00000017247	YBX3	90	88.742	ENSMOCG00000016291	Ybx3	96	93.878	Microtus_ochrogaster
ENSLAFG00000017247	YBX3	85	81.119	ENSMODG00000018248	YBX3	91	86.063	Monodelphis_domestica
ENSLAFG00000017247	YBX3	94	86.076	MGP_CAROLIEiJ_G0028947	Ybx3	100	86.992	Mus_caroli
ENSLAFG00000017247	YBX3	94	86.076	ENSMUSG00000030189	Ybx3	100	86.992	Mus_musculus
ENSLAFG00000017247	YBX3	94	86.709	MGP_PahariEiJ_G0022709	Ybx3	100	87.534	Mus_pahari
ENSLAFG00000017247	YBX3	94	86.392	MGP_SPRETEiJ_G0029994	Ybx3	100	87.263	Mus_spretus
ENSLAFG00000017247	YBX3	100	79.211	ENSMPUG00000011810	YBX3	100	79.474	Mustela_putorius_furo
ENSLAFG00000017247	YBX3	78	93.309	ENSMLUG00000007476	YBX3	100	91.822	Myotis_lucifugus
ENSLAFG00000017247	YBX3	93	85.397	ENSNGAG00000000710	Ybx3	91	63.176	Nannospalax_galili
ENSLAFG00000017247	YBX3	95	85.358	ENSNLEG00000034844	YBX3	84	90.508	Nomascus_leucogenys
ENSLAFG00000017247	YBX3	55	68.095	ENSMEUG00000002507	-	88	74.074	Notamacropus_eugenii
ENSLAFG00000017247	YBX3	95	80.878	ENSODEG00000017957	YBX3	98	79.341	Octodon_degus
ENSLAFG00000017247	YBX3	98	85.196	ENSOCUG00000001889	YBX3	94	85.460	Oryctolagus_cuniculus
ENSLAFG00000017247	YBX3	100	91.247	ENSOGAG00000013245	YBX3	100	91.247	Otolemur_garnettii
ENSLAFG00000017247	YBX3	88	79.798	ENSOARG00000020919	YBX3	99	85.135	Ovis_aries
ENSLAFG00000017247	YBX3	100	84.097	ENSPPAG00000039068	YBX3	100	85.175	Pan_paniscus
ENSLAFG00000017247	YBX3	100	93.298	ENSPPRG00000005859	YBX3	100	94.370	Panthera_pardus
ENSLAFG00000017247	YBX3	83	91.815	ENSPTIG00000005322	YBX3	81	95.804	Panthera_tigris_altaica
ENSLAFG00000017247	YBX3	100	91.444	ENSPTRG00000004681	YBX3	100	90.909	Pan_troglodytes
ENSLAFG00000017247	YBX3	100	91.129	ENSPANG00000010280	YBX3	100	90.860	Papio_anubis
ENSLAFG00000017247	YBX3	57	99.038	ENSPSIG00000009247	YBX3	90	100.000	Pelodiscus_sinensis
ENSLAFG00000017247	YBX3	95	86.875	ENSPEMG00000012132	-	92	94.218	Peromyscus_maniculatus_bairdii
ENSLAFG00000017247	YBX3	81	88.288	ENSPEMG00000010391	-	74	89.333	Peromyscus_maniculatus_bairdii
ENSLAFG00000017247	YBX3	77	82.239	ENSPCIG00000029949	YBX3	100	82.239	Phascolarctos_cinereus
ENSLAFG00000017247	YBX3	100	91.914	ENSPPYG00000004279	YBX3	100	91.375	Pongo_abelii
ENSLAFG00000017247	YBX3	79	93.448	ENSPCAG00000001397	YBX3	98	93.310	Procavia_capensis
ENSLAFG00000017247	YBX3	50	91.257	ENSPCOG00000011663	YBX3	100	88.716	Propithecus_coquereli
ENSLAFG00000017247	YBX3	100	79.412	ENSPVAG00000006740	YBX3	77	92.708	Pteropus_vampyrus
ENSLAFG00000017247	YBX3	94	87.342	ENSRNOG00000005480	Ybx3	100	87.805	Rattus_norvegicus
ENSLAFG00000017247	YBX3	100	91.375	ENSRBIG00000039208	YBX3	100	91.375	Rhinopithecus_bieti
ENSLAFG00000017247	YBX3	100	91.644	ENSRROG00000029638	YBX3	100	91.105	Rhinopithecus_roxellana
ENSLAFG00000017247	YBX3	93	82.749	ENSSBOG00000030573	YBX3	87	91.864	Saimiri_boliviensis_boliviensis
ENSLAFG00000017247	YBX3	83	77.083	ENSSHAG00000003262	YBX3	98	82.474	Sarcophilus_harrisii
ENSLAFG00000017247	YBX3	54	75.758	ENSSPUG00000009911	-	66	54.545	Sphenodon_punctatus
ENSLAFG00000017247	YBX3	92	89.474	ENSSSCG00000000633	YBX3	99	91.136	Sus_scrofa
ENSLAFG00000017247	YBX3	83	63.251	ENSTGUG00000012047	YBX3	100	67.133	Taeniopygia_guttata
ENSLAFG00000017247	YBX3	100	85.095	ENSTBEG00000012570	YBX3	100	83.198	Tupaia_belangeri
ENSLAFG00000017247	YBX3	78	84.211	ENSTTRG00000008045	YBX3	100	85.714	Tursiops_truncatus
ENSLAFG00000017247	YBX3	80	91.045	ENSUAMG00000016662	YBX3	100	92.058	Ursus_americanus
ENSLAFG00000017247	YBX3	83	91.103	ENSUMAG00000016118	YBX3	94	95.105	Ursus_maritimus
ENSLAFG00000017247	YBX3	83	64.894	ENSVPAG00000000876	YBX3	100	71.831	Vicugna_pacos
ENSLAFG00000017247	YBX3	80	91.418	ENSVVUG00000004956	YBX3	100	92.780	Vulpes_vulpes
ENSLAFG00000017247	YBX3	53	92.222	ENSXETG00000016239	ybx3	92	53.922	Xenopus_tropicalis