EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000017459 (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 3989 bases
Position: chrscaffold_26:23756228-23760216
Accession: 17259
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000014640	LSM	PF01423.22	7.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000017454	LSM4-201	420	-	ENSLAFP00000014640	139 (aa)	-	G3TIX9

Gene Model

Click here to download ENSLAFG00000017459's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000017459's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000017459	LSM4	70	33.663	ENSLAFG00000016139	LSM2	82	34.177
ENSLAFG00000017459	LSM4	52	34.722	ENSLAFG00000028180	SNRPD3	56	34.722

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000017459	LSM4	99	98.551	ENSG00000130520	LSM4	100	98.400	Homo_sapiens
ENSLAFG00000017459	LSM4	71	95.918	ENSAPOG00000005643	lsm4	58	97.701	Acanthochromis_polyacanthus
ENSLAFG00000017459	LSM4	100	98.561	ENSAMEG00000011162	LSM4	95	98.561	Ailuropoda_melanoleuca
ENSLAFG00000017459	LSM4	98	76.056	ENSAOCG00000006414	lsm4	59	97.701	Amphiprion_ocellaris
ENSLAFG00000017459	LSM4	71	95.918	ENSAPEG00000006238	lsm4	58	97.701	Amphiprion_percula
ENSLAFG00000017459	LSM4	71	95.918	ENSATEG00000016559	lsm4	57	97.701	Anabas_testudineus
ENSLAFG00000017459	LSM4	99	98.551	ENSANAG00000034659	LSM4	100	98.400	Aotus_nancymaae
ENSLAFG00000017459	LSM4	78	82.927	ENSACLG00000022738	lsm4	59	97.701	Astatotilapia_calliptera
ENSLAFG00000017459	LSM4	98	83.942	ENSAMXG00000016932	lsm4	96	83.824	Astyanax_mexicanus
ENSLAFG00000017459	LSM4	100	98.561	ENSBTAG00000008578	LSM4	100	98.561	Bos_taurus
ENSLAFG00000017459	LSM4	59	76.829	WBGene00003078	lsm-4	67	76.829	Caenorhabditis_elegans
ENSLAFG00000017459	LSM4	99	98.551	ENSCJAG00000014171	LSM4	100	98.400	Callithrix_jacchus
ENSLAFG00000017459	LSM4	99	98.540	ENSCAFG00000014900	LSM4	90	98.540	Canis_familiaris
ENSLAFG00000017459	LSM4	99	98.551	ENSCAFG00020012137	LSM4	99	98.551	Canis_lupus_dingo
ENSLAFG00000017459	LSM4	100	98.561	ENSCHIG00000010928	LSM4	92	98.561	Capra_hircus
ENSLAFG00000017459	LSM4	99	97.826	ENSTSYG00000030906	LSM4	100	97.600	Carlito_syrichta
ENSLAFG00000017459	LSM4	99	96.377	ENSCAPG00000014140	LSM4	99	96.377	Cavia_aperea
ENSLAFG00000017459	LSM4	99	96.377	ENSCPOG00000024117	LSM4	99	96.377	Cavia_porcellus
ENSLAFG00000017459	LSM4	99	98.551	ENSCCAG00000036308	LSM4	100	98.400	Cebus_capucinus
ENSLAFG00000017459	LSM4	99	98.551	ENSCATG00000029311	LSM4	100	98.400	Cercocebus_atys
ENSLAFG00000017459	LSM4	99	94.928	ENSCLAG00000010828	LSM4	99	94.928	Chinchilla_lanigera
ENSLAFG00000017459	LSM4	99	98.551	ENSCSAG00000005370	LSM4	99	98.551	Chlorocebus_sabaeus
ENSLAFG00000017459	LSM4	99	81.884	ENSCPBG00000012925	LSM4	99	79.710	Chrysemys_picta_bellii
ENSLAFG00000017459	LSM4	62	89.535	ENSCING00000007519	-	69	90.805	Ciona_intestinalis
ENSLAFG00000017459	LSM4	62	90.698	ENSCSAVG00000008596	-	70	91.954	Ciona_savignyi
ENSLAFG00000017459	LSM4	99	98.551	ENSCANG00000043686	LSM4	100	98.400	Colobus_angolensis_palliatus
ENSLAFG00000017459	LSM4	99	94.928	ENSCGRG00001014436	Lsm4	99	94.928	Cricetulus_griseus_chok1gshd
ENSLAFG00000017459	LSM4	99	94.928	ENSCGRG00000009398	Lsm4	100	94.928	Cricetulus_griseus_crigri
ENSLAFG00000017459	LSM4	69	94.792	ENSCSEG00000016127	lsm4	96	77.206	Cynoglossus_semilaevis
ENSLAFG00000017459	LSM4	98	76.978	ENSCVAG00000010601	lsm4	61	96.552	Cyprinodon_variegatus
ENSLAFG00000017459	LSM4	88	74.400	ENSCVAG00000021828	lsm4	56	95.890	Cyprinodon_variegatus
ENSLAFG00000017459	LSM4	96	78.571	ENSDARG00000023852	lsm4	61	97.701	Danio_rerio
ENSLAFG00000017459	LSM4	99	96.377	ENSDORG00000024225	Lsm4	99	96.377	Dipodomys_ordii
ENSLAFG00000017459	LSM4	69	80.208	FBgn0032240	CG17768	56	87.356	Drosophila_melanogaster
ENSLAFG00000017459	LSM4	89	100.000	ENSETEG00000007762	-	100	100.000	Echinops_telfairi
ENSLAFG00000017459	LSM4	54	92.000	ENSEBUG00000003639	-	52	88.608	Eptatretus_burgeri
ENSLAFG00000017459	LSM4	99	98.551	ENSECAG00000010141	LSM4	56	98.551	Equus_caballus
ENSLAFG00000017459	LSM4	95	84.328	ENSELUG00000012821	lsm4	100	82.576	Esox_lucius
ENSLAFG00000017459	LSM4	99	98.551	ENSFCAG00000040580	LSM4	100	98.400	Felis_catus
ENSLAFG00000017459	LSM4	100	81.295	ENSFALG00000009478	LSM4	100	79.137	Ficedula_albicollis
ENSLAFG00000017459	LSM4	99	95.652	ENSFDAG00000010124	LSM4	100	95.652	Fukomys_damarensis
ENSLAFG00000017459	LSM4	70	95.876	ENSGMOG00000007729	lsm4	60	97.727	Gadus_morhua
ENSLAFG00000017459	LSM4	99	81.159	ENSGALG00000003385	LSM4	99	78.986	Gallus_gallus
ENSLAFG00000017459	LSM4	78	82.114	ENSGAFG00000004903	lsm4	55	93.151	Gambusia_affinis
ENSLAFG00000017459	LSM4	68	96.809	ENSGACG00000008140	lsm4	58	97.701	Gasterosteus_aculeatus
ENSLAFG00000017459	LSM4	99	81.884	ENSGAGG00000017812	LSM4	99	79.710	Gopherus_agassizii
ENSLAFG00000017459	LSM4	99	98.551	ENSGGOG00000012914	-	100	98.400	Gorilla_gorilla
ENSLAFG00000017459	LSM4	99	95.652	ENSHGLG00000006568	LSM4	99	95.652	Heterocephalus_glaber_female
ENSLAFG00000017459	LSM4	67	97.849	ENSHGLG00100007894	LSM4	100	97.849	Heterocephalus_glaber_male
ENSLAFG00000017459	LSM4	98	76.471	ENSHCOG00000008819	lsm4	61	97.701	Hippocampus_comes
ENSLAFG00000017459	LSM4	98	83.212	ENSIPUG00000005368	Lsm4	61	97.701	Ictalurus_punctatus
ENSLAFG00000017459	LSM4	99	98.551	ENSSTOG00000016494	LSM4	99	98.551	Ictidomys_tridecemlineatus
ENSLAFG00000017459	LSM4	99	95.652	ENSJJAG00000017420	Lsm4	99	95.652	Jaculus_jaculus
ENSLAFG00000017459	LSM4	61	98.824	ENSKMAG00000005073	lsm4	60	98.851	Kryptolebias_marmoratus
ENSLAFG00000017459	LSM4	71	95.918	ENSLBEG00000027930	lsm4	58	97.701	Labrus_bergylta
ENSLAFG00000017459	LSM4	98	83.088	ENSLACG00000015861	LSM4	97	83.088	Latimeria_chalumnae
ENSLAFG00000017459	LSM4	92	83.594	ENSLOCG00000002025	lsm4	62	96.552	Lepisosteus_oculatus
ENSLAFG00000017459	LSM4	99	98.551	ENSMFAG00000031194	LSM4	100	98.400	Macaca_fascicularis
ENSLAFG00000017459	LSM4	99	98.551	ENSMMUG00000004405	LSM4	100	98.400	Macaca_mulatta
ENSLAFG00000017459	LSM4	99	98.551	ENSMNEG00000042899	LSM4	100	98.400	Macaca_nemestrina
ENSLAFG00000017459	LSM4	99	98.551	ENSMLEG00000027948	LSM4	100	98.400	Mandrillus_leucophaeus
ENSLAFG00000017459	LSM4	98	79.562	ENSMAMG00000006190	lsm4	96	77.206	Mastacembelus_armatus
ENSLAFG00000017459	LSM4	78	82.927	ENSMZEG00005016420	lsm4	60	97.701	Maylandia_zebra
ENSLAFG00000017459	LSM4	100	82.857	ENSMGAG00000004976	LSM4	100	89.928	Meleagris_gallopavo
ENSLAFG00000017459	LSM4	99	97.826	ENSMICG00000000222	LSM4	100	97.600	Microcebus_murinus
ENSLAFG00000017459	LSM4	99	94.928	ENSMOCG00000020861	Lsm4	99	94.928	Microtus_ochrogaster
ENSLAFG00000017459	LSM4	89	95.968	ENSMODG00000015044	-	100	95.968	Monodelphis_domestica
ENSLAFG00000017459	LSM4	98	78.417	ENSMALG00000018159	lsm4	61	98.851	Monopterus_albus
ENSLAFG00000017459	LSM4	99	94.928	MGP_CAROLIEiJ_G0031158	Lsm4	99	94.928	Mus_caroli
ENSLAFG00000017459	LSM4	99	94.928	ENSMUSG00000031848	Lsm4	99	94.928	Mus_musculus
ENSLAFG00000017459	LSM4	99	94.928	MGP_PahariEiJ_G0021623	Lsm4	99	94.928	Mus_pahari
ENSLAFG00000017459	LSM4	99	94.928	MGP_SPRETEiJ_G0032276	Lsm4	99	94.928	Mus_spretus
ENSLAFG00000017459	LSM4	99	98.551	ENSMPUG00000015589	LSM4	99	98.551	Mustela_putorius_furo
ENSLAFG00000017459	LSM4	100	98.561	ENSMLUG00000004010	LSM4	100	98.561	Myotis_lucifugus
ENSLAFG00000017459	LSM4	99	94.928	ENSNGAG00000008644	Lsm4	100	94.737	Nannospalax_galili
ENSLAFG00000017459	LSM4	71	95.960	ENSNBRG00000022150	lsm4	54	97.727	Neolamprologus_brichardi
ENSLAFG00000017459	LSM4	89	92.742	ENSMEUG00000013229	LSM4	100	92.742	Notamacropus_eugenii
ENSLAFG00000017459	LSM4	89	91.935	ENSOPRG00000005575	LSM4	100	81.452	Ochotona_princeps
ENSLAFG00000017459	LSM4	99	86.232	ENSODEG00000004519	-	99	73.913	Octodon_degus
ENSLAFG00000017459	LSM4	99	95.652	ENSODEG00000020549	-	99	95.652	Octodon_degus
ENSLAFG00000017459	LSM4	99	72.464	ENSODEG00000011712	-	99	72.464	Octodon_degus
ENSLAFG00000017459	LSM4	78	82.927	ENSONIG00000012724	lsm4	59	97.701	Oreochromis_niloticus
ENSLAFG00000017459	LSM4	63	92.391	ENSOANG00000007434	LSM4	79	92.391	Ornithorhynchus_anatinus
ENSLAFG00000017459	LSM4	99	85.507	ENSORLG00000008391	lsm4	60	98.851	Oryzias_latipes
ENSLAFG00000017459	LSM4	78	83.740	ENSORLG00020014829	lsm4	60	98.851	Oryzias_latipes_hni
ENSLAFG00000017459	LSM4	99	85.507	ENSORLG00015010205	lsm4	60	98.851	Oryzias_latipes_hsok
ENSLAFG00000017459	LSM4	99	82.609	ENSOMEG00000003606	lsm4	60	96.552	Oryzias_melastigma
ENSLAFG00000017459	LSM4	72	98.000	ENSOGAG00000027992	LSM4	60	98.864	Otolemur_garnettii
ENSLAFG00000017459	LSM4	86	98.319	ENSOARG00000012553	LSM4	94	98.319	Ovis_aries
ENSLAFG00000017459	LSM4	99	98.551	ENSPPAG00000044045	-	100	98.400	Pan_paniscus
ENSLAFG00000017459	LSM4	99	98.551	ENSPPRG00000018264	LSM4	100	98.400	Panthera_pardus
ENSLAFG00000017459	LSM4	99	98.551	ENSPTIG00000006306	LSM4	100	98.551	Panthera_tigris_altaica
ENSLAFG00000017459	LSM4	99	98.551	ENSPTRG00000031470	LSM4	100	98.400	Pan_troglodytes
ENSLAFG00000017459	LSM4	99	98.551	ENSPANG00000014399	LSM4	100	98.400	Papio_anubis
ENSLAFG00000017459	LSM4	98	81.618	ENSPKIG00000006154	lsm4	62	97.701	Paramormyrops_kingsleyae
ENSLAFG00000017459	LSM4	99	81.159	ENSPSIG00000012358	LSM4	100	78.986	Pelodiscus_sinensis
ENSLAFG00000017459	LSM4	100	94.245	ENSPEMG00000001358	Lsm4	99	94.928	Peromyscus_maniculatus_bairdii
ENSLAFG00000017459	LSM4	98	79.856	ENSPLAG00000016267	lsm4	61	97.701	Poecilia_latipinna
ENSLAFG00000017459	LSM4	99	78.571	ENSPMEG00000016378	lsm4	63	97.727	Poecilia_mexicana
ENSLAFG00000017459	LSM4	99	98.551	ENSPPYG00000009736	LSM4	99	98.551	Pongo_abelii
ENSLAFG00000017459	LSM4	89	100.000	ENSPCAG00000008513	LSM4	100	100.000	Procavia_capensis
ENSLAFG00000017459	LSM4	99	97.826	ENSPCOG00000019837	LSM4	100	97.600	Propithecus_coquereli
ENSLAFG00000017459	LSM4	99	98.551	ENSPVAG00000015383	LSM4	99	98.551	Pteropus_vampyrus
ENSLAFG00000017459	LSM4	78	82.927	ENSPNYG00000016794	lsm4	60	97.701	Pundamilia_nyererei
ENSLAFG00000017459	LSM4	96	83.582	ENSPNAG00000016598	lsm4	65	97.701	Pygocentrus_nattereri
ENSLAFG00000017459	LSM4	99	94.928	ENSRNOG00000019572	Lsm4	99	94.928	Rattus_norvegicus
ENSLAFG00000017459	LSM4	99	98.551	ENSRBIG00000024717	LSM4	100	98.400	Rhinopithecus_bieti
ENSLAFG00000017459	LSM4	99	98.551	ENSRROG00000045706	LSM4	100	98.400	Rhinopithecus_roxellana
ENSLAFG00000017459	LSM4	90	98.400	ENSSBOG00000022455	LSM4	100	98.400	Saimiri_boliviensis_boliviensis
ENSLAFG00000017459	LSM4	99	96.377	ENSSHAG00000011559	LSM4	99	96.377	Sarcophilus_harrisii
ENSLAFG00000017459	LSM4	98	80.147	ENSSFOG00015021067	lsm4	62	97.701	Scleropages_formosus
ENSLAFG00000017459	LSM4	71	94.898	ENSSMAG00000021020	lsm4	58	97.701	Scophthalmus_maximus
ENSLAFG00000017459	LSM4	71	95.918	ENSSDUG00000009588	lsm4	52	97.701	Seriola_dumerili
ENSLAFG00000017459	LSM4	71	95.918	ENSSLDG00000006827	lsm4	52	97.701	Seriola_lalandi_dorsalis
ENSLAFG00000017459	LSM4	63	97.727	ENSSPUG00000010166	LSM4	57	97.727	Sphenodon_punctatus
ENSLAFG00000017459	LSM4	71	95.918	ENSSPAG00000011615	lsm4	58	97.701	Stegastes_partitus
ENSLAFG00000017459	LSM4	99	98.551	ENSSSCG00000034314	LSM4	99	98.551	Sus_scrofa
ENSLAFG00000017459	LSM4	98	83.453	ENSTRUG00000021737	lsm4	61	95.402	Takifugu_rubripes
ENSLAFG00000017459	LSM4	98	80.576	ENSTNIG00000010191	lsm4	60	96.552	Tetraodon_nigroviridis
ENSLAFG00000017459	LSM4	100	98.561	ENSUAMG00000000665	LSM4	100	98.561	Ursus_americanus
ENSLAFG00000017459	LSM4	99	98.551	ENSUMAG00000009013	LSM4	99	98.551	Ursus_maritimus
ENSLAFG00000017459	LSM4	100	97.842	ENSVVUG00000008136	LSM4	71	97.842	Vulpes_vulpes
ENSLAFG00000017459	LSM4	99	91.304	ENSXETG00000024933	lsm4	99	77.536	Xenopus_tropicalis