EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000017509 (Gene tree)
Gene ID: -
Gene Symbol: CMSS1
Alias: C3orf26|MGC4308
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 20909 bases
Position: chrscaffold_66:2276588-2297496
Accession: 28666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000014683	CMS1	PF14617.6	1e-32	1	1
ENSLAFP00000014683	DEAD	PF00270.29	4.9e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000017508	CMSS1-201	687	-	ENSLAFP00000014683	228 (aa)	-	G3TJ11

Gene Model

Click here to download ENSLAFG00000017509's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000017509's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000017509	CMSS1	100	89.474	ENSG00000184220	CMSS1	99	91.358	Homo_sapiens
ENSLAFG00000017509	CMSS1	89	63.366	ENSAPOG00000010604	cmss1	81	63.000	Acanthochromis_polyacanthus
ENSLAFG00000017509	CMSS1	100	91.266	ENSAMEG00000004092	CMSS1	88	91.266	Ailuropoda_melanoleuca
ENSLAFG00000017509	CMSS1	89	54.950	ENSACIG00000021854	cmss1	74	54.500	Amphilophus_citrinellus
ENSLAFG00000017509	CMSS1	89	62.376	ENSAOCG00000013361	cmss1	69	62.000	Amphiprion_ocellaris
ENSLAFG00000017509	CMSS1	89	62.376	ENSAPEG00000005829	cmss1	69	62.000	Amphiprion_percula
ENSLAFG00000017509	CMSS1	99	60.526	ENSATEG00000008209	cmss1	88	56.904	Anabas_testudineus
ENSLAFG00000017509	CMSS1	100	67.249	ENSAPLG00000010542	CMSS1	99	67.249	Anas_platyrhynchos
ENSLAFG00000017509	CMSS1	100	67.672	ENSACAG00000011065	CMSS1	85	67.672	Anolis_carolinensis
ENSLAFG00000017509	CMSS1	100	89.474	ENSANAG00000023565	CMSS1	87	89.474	Aotus_nancymaae
ENSLAFG00000017509	CMSS1	89	62.871	ENSACLG00000027294	cmss1	69	62.500	Astatotilapia_calliptera
ENSLAFG00000017509	CMSS1	88	55.000	ENSAMXG00000002046	cmss1	79	54.310	Astyanax_mexicanus
ENSLAFG00000017509	CMSS1	100	89.912	ENSBTAG00000013663	CMSS1	83	89.912	Bos_taurus
ENSLAFG00000017509	CMSS1	100	89.474	ENSCJAG00000000610	CMSS1	87	89.474	Callithrix_jacchus
ENSLAFG00000017509	CMSS1	100	91.667	ENSCAFG00000009230	CMSS1	83	91.667	Canis_familiaris
ENSLAFG00000017509	CMSS1	100	91.667	ENSCAFG00020009464	-	83	91.667	Canis_lupus_dingo
ENSLAFG00000017509	CMSS1	99	84.071	ENSCAFG00020024156	-	71	84.071	Canis_lupus_dingo
ENSLAFG00000017509	CMSS1	100	89.474	ENSCHIG00000013003	CMSS1	83	89.474	Capra_hircus
ENSLAFG00000017509	CMSS1	100	90.351	ENSTSYG00000009266	CMSS1	88	90.351	Carlito_syrichta
ENSLAFG00000017509	CMSS1	98	69.432	ENSCAPG00000013584	CMSS1	87	76.042	Cavia_aperea
ENSLAFG00000017509	CMSS1	100	89.035	ENSCPOG00000014680	CMSS1	82	89.035	Cavia_porcellus
ENSLAFG00000017509	CMSS1	100	90.351	ENSCCAG00000034685	CMSS1	87	90.351	Cebus_capucinus
ENSLAFG00000017509	CMSS1	100	91.667	ENSCATG00000031980	CMSS1	87	91.667	Cercocebus_atys
ENSLAFG00000017509	CMSS1	100	90.351	ENSCLAG00000011241	CMSS1	98	90.351	Chinchilla_lanigera
ENSLAFG00000017509	CMSS1	100	91.667	ENSCSAG00000006024	CMSS1	93	91.667	Chlorocebus_sabaeus
ENSLAFG00000017509	CMSS1	100	69.298	ENSCHOG00000012098	CMSS1	83	69.298	Choloepus_hoffmanni
ENSLAFG00000017509	CMSS1	86	42.500	ENSCING00000014848	-	100	43.850	Ciona_intestinalis
ENSLAFG00000017509	CMSS1	55	42.857	ENSCSAVG00000002309	-	99	42.857	Ciona_savignyi
ENSLAFG00000017509	CMSS1	100	90.789	ENSCANG00000031337	CMSS1	87	90.789	Colobus_angolensis_palliatus
ENSLAFG00000017509	CMSS1	100	83.333	ENSCGRG00001014305	Cmss1	82	83.333	Cricetulus_griseus_chok1gshd
ENSLAFG00000017509	CMSS1	100	83.772	ENSCGRG00000006722	Cmss1	89	83.772	Cricetulus_griseus_crigri
ENSLAFG00000017509	CMSS1	89	61.881	ENSCSEG00000004958	cmss1	68	61.500	Cynoglossus_semilaevis
ENSLAFG00000017509	CMSS1	89	60.891	ENSCVAG00000005039	cmss1	69	61.000	Cyprinodon_variegatus
ENSLAFG00000017509	CMSS1	99	51.948	ENSDARG00000112579	cmss1	79	52.155	Danio_rerio
ENSLAFG00000017509	CMSS1	100	89.474	ENSDNOG00000040418	CMSS1	83	89.474	Dasypus_novemcinctus
ENSLAFG00000017509	CMSS1	100	88.158	ENSDORG00000010461	Cmss1	82	88.158	Dipodomys_ordii
ENSLAFG00000017509	CMSS1	58	51.515	ENSEBUG00000002156	-	96	51.515	Eptatretus_burgeri
ENSLAFG00000017509	CMSS1	100	89.474	ENSEASG00005010966	CMSS1	99	89.498	Equus_asinus_asinus
ENSLAFG00000017509	CMSS1	100	88.158	ENSECAG00000015662	CMSS1	99	87.611	Equus_caballus
ENSLAFG00000017509	CMSS1	100	61.842	ENSEEUG00000007624	-	82	62.281	Erinaceus_europaeus
ENSLAFG00000017509	CMSS1	89	60.891	ENSELUG00000019459	cmss1	75	59.735	Esox_lucius
ENSLAFG00000017509	CMSS1	100	91.667	ENSFCAG00000044577	CMSS1	82	91.667	Felis_catus
ENSLAFG00000017509	CMSS1	100	65.351	ENSFALG00000005816	CMSS1	96	65.351	Ficedula_albicollis
ENSLAFG00000017509	CMSS1	100	88.596	ENSFDAG00000012577	CMSS1	100	88.596	Fukomys_damarensis
ENSLAFG00000017509	CMSS1	99	59.740	ENSFHEG00000012008	cmss1	95	59.740	Fundulus_heteroclitus
ENSLAFG00000017509	CMSS1	89	61.881	ENSGMOG00000016729	cmss1	72	61.500	Gadus_morhua
ENSLAFG00000017509	CMSS1	100	67.544	ENSGALG00000015267	CMSS1	87	67.544	Gallus_gallus
ENSLAFG00000017509	CMSS1	93	62.559	ENSGAFG00000021217	cmss1	76	63.000	Gambusia_affinis
ENSLAFG00000017509	CMSS1	89	57.921	ENSGACG00000002798	cmss1	72	57.500	Gasterosteus_aculeatus
ENSLAFG00000017509	CMSS1	100	69.737	ENSGAGG00000019861	CMSS1	89	69.737	Gopherus_agassizii
ENSLAFG00000017509	CMSS1	100	90.789	ENSGGOG00000014125	CMSS1	87	90.789	Gorilla_gorilla
ENSLAFG00000017509	CMSS1	89	62.871	ENSHBUG00000008431	cmss1	71	62.500	Haplochromis_burtoni
ENSLAFG00000017509	CMSS1	99	89.427	ENSHGLG00000019481	CMSS1	93	89.427	Heterocephalus_glaber_female
ENSLAFG00000017509	CMSS1	99	89.427	ENSHGLG00100010314	CMSS1	91	89.427	Heterocephalus_glaber_male
ENSLAFG00000017509	CMSS1	96	64.384	ENSHCOG00000003222	cmss1	74	64.384	Hippocampus_comes
ENSLAFG00000017509	CMSS1	96	56.818	ENSIPUG00000011591	cmss1	76	56.818	Ictalurus_punctatus
ENSLAFG00000017509	CMSS1	100	92.105	ENSSTOG00000019366	CMSS1	82	92.105	Ictidomys_tridecemlineatus
ENSLAFG00000017509	CMSS1	100	86.404	ENSJJAG00000014894	Cmss1	89	89.000	Jaculus_jaculus
ENSLAFG00000017509	CMSS1	89	54.950	ENSKMAG00000002390	cmss1	80	54.500	Kryptolebias_marmoratus
ENSLAFG00000017509	CMSS1	89	58.128	ENSLBEG00000006298	cmss1	82	57.711	Labrus_bergylta
ENSLAFG00000017509	CMSS1	100	64.783	ENSLACG00000009293	CMSS1	100	64.783	Latimeria_chalumnae
ENSLAFG00000017509	CMSS1	99	57.709	ENSLOCG00000009391	cmss1	80	57.269	Lepisosteus_oculatus
ENSLAFG00000017509	CMSS1	100	91.228	ENSMFAG00000045006	CMSS1	87	91.228	Macaca_fascicularis
ENSLAFG00000017509	CMSS1	100	90.789	ENSMMUG00000002939	CMSS1	97	90.367	Macaca_mulatta
ENSLAFG00000017509	CMSS1	100	90.789	ENSMNEG00000031315	CMSS1	87	90.789	Macaca_nemestrina
ENSLAFG00000017509	CMSS1	100	91.228	ENSMLEG00000033660	CMSS1	87	91.228	Mandrillus_leucophaeus
ENSLAFG00000017509	CMSS1	99	59.565	ENSMAMG00000017176	cmss1	69	63.000	Mastacembelus_armatus
ENSLAFG00000017509	CMSS1	89	62.871	ENSMZEG00005021886	cmss1	69	62.500	Maylandia_zebra
ENSLAFG00000017509	CMSS1	100	66.667	ENSMGAG00000014360	CMSS1	100	66.667	Meleagris_gallopavo
ENSLAFG00000017509	CMSS1	100	57.018	ENSMAUG00000020609	Cmss1	78	57.018	Mesocricetus_auratus
ENSLAFG00000017509	CMSS1	100	90.351	ENSMICG00000048977	CMSS1	88	90.351	Microcebus_murinus
ENSLAFG00000017509	CMSS1	100	84.211	ENSMOCG00000021937	Cmss1	83	84.211	Microtus_ochrogaster
ENSLAFG00000017509	CMSS1	89	61.881	ENSMMOG00000019794	cmss1	83	61.500	Mola_mola
ENSLAFG00000017509	CMSS1	100	79.825	ENSMODG00000002275	CMSS1	86	79.825	Monodelphis_domestica
ENSLAFG00000017509	CMSS1	89	63.861	ENSMALG00000004250	cmss1	69	63.500	Monopterus_albus
ENSLAFG00000017509	CMSS1	100	82.533	MGP_CAROLIEiJ_G0020824	Cmss1	83	82.533	Mus_caroli
ENSLAFG00000017509	CMSS1	100	83.843	ENSMUSG00000022748	Cmss1	83	83.843	Mus_musculus
ENSLAFG00000017509	CMSS1	100	82.969	MGP_PahariEiJ_G0016524	Cmss1	83	82.969	Mus_pahari
ENSLAFG00000017509	CMSS1	100	83.843	MGP_SPRETEiJ_G0021724	Cmss1	83	83.843	Mus_spretus
ENSLAFG00000017509	CMSS1	99	92.952	ENSMPUG00000011324	CMSS1	88	92.952	Mustela_putorius_furo
ENSLAFG00000017509	CMSS1	100	89.565	ENSMLUG00000001131	CMSS1	87	89.565	Myotis_lucifugus
ENSLAFG00000017509	CMSS1	100	85.088	ENSNGAG00000020316	Cmss1	82	85.088	Nannospalax_galili
ENSLAFG00000017509	CMSS1	89	62.376	ENSNBRG00000003095	cmss1	69	62.000	Neolamprologus_brichardi
ENSLAFG00000017509	CMSS1	100	92.105	ENSNLEG00000034172	CMSS1	87	92.105	Nomascus_leucogenys
ENSLAFG00000017509	CMSS1	100	65.789	ENSMEUG00000014505	CMSS1	100	65.789	Notamacropus_eugenii
ENSLAFG00000017509	CMSS1	100	91.228	ENSOPRG00000002986	CMSS1	82	91.228	Ochotona_princeps
ENSLAFG00000017509	CMSS1	96	79.358	ENSODEG00000009446	-	85	79.358	Octodon_degus
ENSLAFG00000017509	CMSS1	100	85.526	ENSODEG00000003558	-	84	85.526	Octodon_degus
ENSLAFG00000017509	CMSS1	100	76.754	ENSODEG00000001853	-	81	76.754	Octodon_degus
ENSLAFG00000017509	CMSS1	100	89.035	ENSODEG00000005226	-	82	89.035	Octodon_degus
ENSLAFG00000017509	CMSS1	89	62.376	ENSONIG00000006678	cmss1	77	62.000	Oreochromis_niloticus
ENSLAFG00000017509	CMSS1	100	76.754	ENSOANG00000007529	CMSS1	99	75.862	Ornithorhynchus_anatinus
ENSLAFG00000017509	CMSS1	100	89.912	ENSOCUG00000025366	CMSS1	83	89.912	Oryctolagus_cuniculus
ENSLAFG00000017509	CMSS1	89	64.356	ENSORLG00000020340	cmss1	70	64.000	Oryzias_latipes
ENSLAFG00000017509	CMSS1	100	54.825	ENSORLG00020012235	cmss1	85	57.000	Oryzias_latipes_hni
ENSLAFG00000017509	CMSS1	89	58.416	ENSORLG00015015551	cmss1	75	58.000	Oryzias_latipes_hsok
ENSLAFG00000017509	CMSS1	89	63.861	ENSOMEG00000012555	cmss1	69	63.500	Oryzias_melastigma
ENSLAFG00000017509	CMSS1	100	89.474	ENSOGAG00000002045	CMSS1	100	89.474	Otolemur_garnettii
ENSLAFG00000017509	CMSS1	100	89.520	ENSOARG00000017899	CMSS1	79	89.520	Ovis_aries
ENSLAFG00000017509	CMSS1	100	90.789	ENSPPAG00000038515	CMSS1	84	90.789	Pan_paniscus
ENSLAFG00000017509	CMSS1	100	92.105	ENSPPRG00000016767	CMSS1	82	92.105	Panthera_pardus
ENSLAFG00000017509	CMSS1	100	92.105	ENSPTIG00000018274	CMSS1	82	92.105	Panthera_tigris_altaica
ENSLAFG00000017509	CMSS1	100	90.351	ENSPTRG00000015157	CMSS1	93	90.351	Pan_troglodytes
ENSLAFG00000017509	CMSS1	100	91.667	ENSPANG00000019980	CMSS1	91	91.667	Papio_anubis
ENSLAFG00000017509	CMSS1	99	60.000	ENSPKIG00000012609	cmss1	85	60.173	Paramormyrops_kingsleyae
ENSLAFG00000017509	CMSS1	100	71.930	ENSPSIG00000003849	CMSS1	99	71.930	Pelodiscus_sinensis
ENSLAFG00000017509	CMSS1	89	61.084	ENSPMGG00000010286	cmss1	86	60.697	Periophthalmus_magnuspinnatus
ENSLAFG00000017509	CMSS1	100	84.649	ENSPEMG00000016384	Cmss1	81	84.649	Peromyscus_maniculatus_bairdii
ENSLAFG00000017509	CMSS1	89	53.922	ENSPMAG00000001146	cmss1	98	54.000	Petromyzon_marinus
ENSLAFG00000017509	CMSS1	100	77.632	ENSPCIG00000015656	CMSS1	86	77.632	Phascolarctos_cinereus
ENSLAFG00000017509	CMSS1	89	63.366	ENSPFOG00000016849	cmss1	70	63.000	Poecilia_formosa
ENSLAFG00000017509	CMSS1	89	62.871	ENSPLAG00000008323	cmss1	70	62.500	Poecilia_latipinna
ENSLAFG00000017509	CMSS1	89	63.366	ENSPMEG00000021020	cmss1	69	63.000	Poecilia_mexicana
ENSLAFG00000017509	CMSS1	89	62.871	ENSPREG00000007618	cmss1	68	62.500	Poecilia_reticulata
ENSLAFG00000017509	CMSS1	100	90.789	ENSPPYG00000013606	CMSS1	84	90.789	Pongo_abelii
ENSLAFG00000017509	CMSS1	100	90.789	ENSPCOG00000020035	CMSS1	88	90.789	Propithecus_coquereli
ENSLAFG00000017509	CMSS1	100	79.825	ENSPVAG00000017031	CMSS1	82	79.825	Pteropus_vampyrus
ENSLAFG00000017509	CMSS1	77	65.341	ENSPNYG00000013428	cmss1	64	64.943	Pundamilia_nyererei
ENSLAFG00000017509	CMSS1	99	52.814	ENSPNAG00000007912	cmss1	79	53.680	Pygocentrus_nattereri
ENSLAFG00000017509	CMSS1	100	82.533	ENSRNOG00000027888	Cmss1	89	82.533	Rattus_norvegicus
ENSLAFG00000017509	CMSS1	100	90.789	ENSRBIG00000037931	CMSS1	87	90.789	Rhinopithecus_bieti
ENSLAFG00000017509	CMSS1	100	90.789	ENSRROG00000042910	CMSS1	87	90.789	Rhinopithecus_roxellana
ENSLAFG00000017509	CMSS1	100	89.474	ENSSBOG00000030980	CMSS1	87	89.474	Saimiri_boliviensis_boliviensis
ENSLAFG00000017509	CMSS1	100	77.632	ENSSHAG00000009321	CMSS1	90	77.632	Sarcophilus_harrisii
ENSLAFG00000017509	CMSS1	99	60.000	ENSSFOG00015001509	cmss1	80	61.905	Scleropages_formosus
ENSLAFG00000017509	CMSS1	89	63.366	ENSSMAG00000001653	cmss1	69	63.000	Scophthalmus_maximus
ENSLAFG00000017509	CMSS1	99	60.262	ENSSDUG00000007719	cmss1	80	60.699	Seriola_dumerili
ENSLAFG00000017509	CMSS1	91	64.251	ENSSLDG00000012300	cmss1	75	61.667	Seriola_lalandi_dorsalis
ENSLAFG00000017509	CMSS1	100	74.123	ENSSARG00000003584	CMSS1	81	74.123	Sorex_araneus
ENSLAFG00000017509	CMSS1	99	69.027	ENSSPUG00000003865	CMSS1	100	69.027	Sphenodon_punctatus
ENSLAFG00000017509	CMSS1	91	63.285	ENSSPAG00000019182	cmss1	62	63.000	Stegastes_partitus
ENSLAFG00000017509	CMSS1	100	91.667	ENSSSCG00000011970	CMSS1	82	91.667	Sus_scrofa
ENSLAFG00000017509	CMSS1	100	65.789	ENSTGUG00000013635	CMSS1	99	65.789	Taeniopygia_guttata
ENSLAFG00000017509	CMSS1	89	61.881	ENSTRUG00000015265	cmss1	71	61.500	Takifugu_rubripes
ENSLAFG00000017509	CMSS1	89	56.931	ENSTNIG00000002880	cmss1	72	56.500	Tetraodon_nigroviridis
ENSLAFG00000017509	CMSS1	100	67.982	ENSTBEG00000016722	CMSS1	81	67.982	Tupaia_belangeri
ENSLAFG00000017509	CMSS1	100	87.719	ENSTTRG00000001562	CMSS1	81	87.719	Tursiops_truncatus
ENSLAFG00000017509	CMSS1	100	92.544	ENSUAMG00000024209	CMSS1	100	92.377	Ursus_americanus
ENSLAFG00000017509	CMSS1	100	91.667	ENSUMAG00000001983	CMSS1	88	91.667	Ursus_maritimus
ENSLAFG00000017509	CMSS1	100	73.246	ENSVPAG00000000263	CMSS1	82	73.246	Vicugna_pacos
ENSLAFG00000017509	CMSS1	99	88.938	ENSVVUG00000007776	-	89	88.938	Vulpes_vulpes
ENSLAFG00000017509	CMSS1	100	91.228	ENSVVUG00000021647	-	93	91.228	Vulpes_vulpes
ENSLAFG00000017509	CMSS1	89	65.347	ENSXETG00000011858	cmss1	72	65.500	Xenopus_tropicalis
ENSLAFG00000017509	CMSS1	91	64.904	ENSXCOG00000018724	cmss1	68	64.500	Xiphophorus_couchianus
ENSLAFG00000017509	CMSS1	91	64.904	ENSXMAG00000011243	cmss1	75	64.500	Xiphophorus_maculatus