EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000022601 (Gene tree)
Gene ID: -
Gene Symbol: CPSF1
Alias: CPSF160
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 8562 bases
Position: chrscaffold_185:55280-63841
Accession: 2324
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000016620	CPSF_A	PF03178.15	2.3e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000022837	CPSF1-201	4188	-	ENSLAFP00000016620	1395 (aa)	-	G3TN49

Gene Model

Click here to download ENSLAFG00000022601's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000022601's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000022601	CPSF1	100	95.497	ENSG00000071894	CPSF1	97	95.497	Homo_sapiens
ENSLAFG00000022601	CPSF1	100	78.188	ENSAPOG00000019621	cpsf1	99	78.328	Acanthochromis_polyacanthus
ENSLAFG00000022601	CPSF1	100	94.564	ENSAMEG00000005557	CPSF1	99	94.564	Ailuropoda_melanoleuca
ENSLAFG00000022601	CPSF1	100	77.714	ENSACIG00000006112	cpsf1	97	78.143	Amphilophus_citrinellus
ENSLAFG00000022601	CPSF1	100	79.261	ENSAOCG00000007120	cpsf1	97	79.332	Amphiprion_ocellaris
ENSLAFG00000022601	CPSF1	100	79.602	ENSAPEG00000005755	cpsf1	97	79.744	Amphiprion_percula
ENSLAFG00000022601	CPSF1	98	78.476	ENSATEG00000011097	cpsf1	99	78.234	Anabas_testudineus
ENSLAFG00000022601	CPSF1	93	80.985	ENSACAG00000009655	CPSF1	96	80.985	Anolis_carolinensis
ENSLAFG00000022601	CPSF1	100	95.494	ENSANAG00000036514	CPSF1	97	95.494	Aotus_nancymaae
ENSLAFG00000022601	CPSF1	99	78.491	ENSACLG00000012231	cpsf1	99	78.702	Astatotilapia_calliptera
ENSLAFG00000022601	CPSF1	99	73.782	ENSAMXG00000008485	cpsf1	96	73.854	Astyanax_mexicanus
ENSLAFG00000022601	CPSF1	100	93.812	ENSBTAG00000008355	CPSF1	100	93.948	Bos_taurus
ENSLAFG00000022601	CPSF1	99	32.131	WBGene00022301	cpsf-1	100	39.718	Caenorhabditis_elegans
ENSLAFG00000022601	CPSF1	100	95.207	ENSCJAG00000021421	CPSF1	97	95.207	Callithrix_jacchus
ENSLAFG00000022601	CPSF1	100	96.206	ENSCAFG00000001600	CPSF1	100	96.116	Canis_familiaris
ENSLAFG00000022601	CPSF1	100	96.135	ENSCAFG00020020821	CPSF1	97	96.135	Canis_lupus_dingo
ENSLAFG00000022601	CPSF1	100	89.950	ENSCHIG00000015833	CPSF1	97	89.950	Capra_hircus
ENSLAFG00000022601	CPSF1	100	95.780	ENSTSYG00000028560	CPSF1	97	95.780	Carlito_syrichta
ENSLAFG00000022601	CPSF1	100	94.130	ENSCAPG00000014921	CPSF1	99	94.130	Cavia_aperea
ENSLAFG00000022601	CPSF1	100	93.491	ENSCPOG00000011448	CPSF1	97	93.491	Cavia_porcellus
ENSLAFG00000022601	CPSF1	100	95.351	ENSCCAG00000037658	CPSF1	97	95.351	Cebus_capucinus
ENSLAFG00000022601	CPSF1	100	95.279	ENSCATG00000037234	CPSF1	97	95.279	Cercocebus_atys
ENSLAFG00000022601	CPSF1	100	95.419	ENSCLAG00000012166	CPSF1	97	95.419	Chinchilla_lanigera
ENSLAFG00000022601	CPSF1	100	95.207	ENSCSAG00000008502	CPSF1	97	95.207	Chlorocebus_sabaeus
ENSLAFG00000022601	CPSF1	99	87.835	ENSCPBG00000018910	CPSF1	93	87.835	Chrysemys_picta_bellii
ENSLAFG00000022601	CPSF1	95	47.839	ENSCING00000000514	-	96	47.839	Ciona_intestinalis
ENSLAFG00000022601	CPSF1	99	48.098	ENSCSAVG00000002293	-	98	49.296	Ciona_savignyi
ENSLAFG00000022601	CPSF1	99	91.565	ENSCANG00000032760	CPSF1	97	91.565	Colobus_angolensis_palliatus
ENSLAFG00000022601	CPSF1	100	95.061	ENSCGRG00001016344	Cpsf1	97	95.061	Cricetulus_griseus_chok1gshd
ENSLAFG00000022601	CPSF1	100	92.699	ENSCGRG00000003118	Cpsf1	97	92.913	Cricetulus_griseus_crigri
ENSLAFG00000022601	CPSF1	99	77.810	ENSCSEG00000013464	cpsf1	99	77.471	Cynoglossus_semilaevis
ENSLAFG00000022601	CPSF1	88	76.714	ENSCVAG00000014059	cpsf1	100	74.537	Cyprinodon_variegatus
ENSLAFG00000022601	CPSF1	99	79.957	ENSDARG00000034178	cpsf1	97	79.602	Danio_rerio
ENSLAFG00000022601	CPSF1	55	95.652	ENSDNOG00000043654	CPSF1	88	95.652	Dasypus_novemcinctus
ENSLAFG00000022601	CPSF1	100	95.204	ENSDORG00000006278	Cpsf1	99	95.204	Dipodomys_ordii
ENSLAFG00000022601	CPSF1	99	45.640	FBgn0024698	Cpsf160	96	45.404	Drosophila_melanogaster
ENSLAFG00000022601	CPSF1	79	97.987	ENSETEG00000006022	CPSF1	79	97.987	Echinops_telfairi
ENSLAFG00000022601	CPSF1	100	96.492	ENSEASG00005010774	CPSF1	97	96.492	Equus_asinus_asinus
ENSLAFG00000022601	CPSF1	100	96.492	ENSECAG00000022209	CPSF1	97	96.492	Equus_caballus
ENSLAFG00000022601	CPSF1	99	94.232	ENSEEUG00000000471	CPSF1	96	94.232	Erinaceus_europaeus
ENSLAFG00000022601	CPSF1	99	78.187	ENSELUG00000012271	cpsf1	100	78.801	Esox_lucius
ENSLAFG00000022601	CPSF1	100	95.419	ENSFDAG00000016060	CPSF1	97	95.419	Fukomys_damarensis
ENSLAFG00000022601	CPSF1	100	76.972	ENSFHEG00000016801	cpsf1	97	77.043	Fundulus_heteroclitus
ENSLAFG00000022601	CPSF1	99	77.999	ENSGMOG00000000796	cpsf1	97	78.236	Gadus_morhua
ENSLAFG00000022601	CPSF1	95	75.887	ENSGAFG00000018890	cpsf1	96	75.887	Gambusia_affinis
ENSLAFG00000022601	CPSF1	100	78.637	ENSGACG00000008703	cpsf1	100	75.800	Gasterosteus_aculeatus
ENSLAFG00000022601	CPSF1	99	83.883	ENSGAGG00000004276	CPSF1	98	88.161	Gopherus_agassizii
ENSLAFG00000022601	CPSF1	100	95.705	ENSGGOG00000016185	CPSF1	97	95.705	Gorilla_gorilla
ENSLAFG00000022601	CPSF1	100	79.429	ENSHBUG00000018900	cpsf1	97	79.429	Haplochromis_burtoni
ENSLAFG00000022601	CPSF1	100	95.204	ENSHGLG00000016139	CPSF1	97	95.204	Heterocephalus_glaber_female
ENSLAFG00000022601	CPSF1	100	95.132	ENSHGLG00100009750	CPSF1	97	95.132	Heterocephalus_glaber_male
ENSLAFG00000022601	CPSF1	99	77.107	ENSHCOG00000018509	cpsf1	97	77.161	Hippocampus_comes
ENSLAFG00000022601	CPSF1	99	76.846	ENSIPUG00000011259	cpsf1	97	76.454	Ictalurus_punctatus
ENSLAFG00000022601	CPSF1	100	95.221	ENSSTOG00000009957	CPSF1	99	95.221	Ictidomys_tridecemlineatus
ENSLAFG00000022601	CPSF1	100	94.560	ENSJJAG00000023002	Cpsf1	97	94.560	Jaculus_jaculus
ENSLAFG00000022601	CPSF1	91	85.580	ENSKMAG00000001940	cpsf1	96	85.580	Kryptolebias_marmoratus
ENSLAFG00000022601	CPSF1	100	77.165	ENSLBEG00000003601	cpsf1	97	77.723	Labrus_bergylta
ENSLAFG00000022601	CPSF1	87	81.490	ENSLACG00000000233	CPSF1	88	81.490	Latimeria_chalumnae
ENSLAFG00000022601	CPSF1	100	77.920	ENSLOCG00000008484	cpsf1	97	78.063	Lepisosteus_oculatus
ENSLAFG00000022601	CPSF1	100	95.279	ENSMFAG00000037013	CPSF1	97	95.279	Macaca_fascicularis
ENSLAFG00000022601	CPSF1	100	95.351	ENSMMUG00000007380	CPSF1	97	95.351	Macaca_mulatta
ENSLAFG00000022601	CPSF1	99	95.490	ENSMNEG00000043564	CPSF1	100	95.490	Macaca_nemestrina
ENSLAFG00000022601	CPSF1	100	95.279	ENSMLEG00000043010	CPSF1	97	95.279	Mandrillus_leucophaeus
ENSLAFG00000022601	CPSF1	98	79.066	ENSMAMG00000003803	cpsf1	99	78.676	Mastacembelus_armatus
ENSLAFG00000022601	CPSF1	99	78.339	ENSMZEG00005001168	cpsf1	97	78.339	Maylandia_zebra
ENSLAFG00000022601	CPSF1	100	95.204	ENSMAUG00000003601	Cpsf1	97	95.204	Mesocricetus_auratus
ENSLAFG00000022601	CPSF1	100	96.206	ENSMICG00000015767	CPSF1	97	96.206	Microcebus_murinus
ENSLAFG00000022601	CPSF1	100	94.989	ENSMOCG00000022758	Cpsf1	97	94.989	Microtus_ochrogaster
ENSLAFG00000022601	CPSF1	99	79.355	ENSMMOG00000021245	cpsf1	96	79.427	Mola_mola
ENSLAFG00000022601	CPSF1	99	93.781	ENSMODG00000010755	CPSF1	97	93.781	Monodelphis_domestica
ENSLAFG00000022601	CPSF1	100	77.948	ENSMALG00000020545	cpsf1	97	78.018	Monopterus_albus
ENSLAFG00000022601	CPSF1	100	95.562	MGP_CAROLIEiJ_G0019936	Cpsf1	97	95.562	Mus_caroli
ENSLAFG00000022601	CPSF1	100	95.490	ENSMUSG00000034022	Cpsf1	97	95.490	Mus_musculus
ENSLAFG00000022601	CPSF1	100	95.419	MGP_PahariEiJ_G0019946	Cpsf1	97	95.419	Mus_pahari
ENSLAFG00000022601	CPSF1	100	95.490	MGP_SPRETEiJ_G0020839	Cpsf1	97	95.490	Mus_spretus
ENSLAFG00000022601	CPSF1	97	95.478	ENSMPUG00000006419	CPSF1	93	95.478	Mustela_putorius_furo
ENSLAFG00000022601	CPSF1	100	94.846	ENSNGAG00000022460	Cpsf1	97	94.846	Nannospalax_galili
ENSLAFG00000022601	CPSF1	99	75.742	ENSNBRG00000000813	cpsf1	96	75.887	Neolamprologus_brichardi
ENSLAFG00000022601	CPSF1	85	83.213	ENSNLEG00000010633	-	100	87.500	Nomascus_leucogenys
ENSLAFG00000022601	CPSF1	85	97.093	ENSMEUG00000014922	CPSF1	85	97.093	Notamacropus_eugenii
ENSLAFG00000022601	CPSF1	62	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSLAFG00000022601	CPSF1	100	95.562	ENSODEG00000013995	CPSF1	97	95.562	Octodon_degus
ENSLAFG00000022601	CPSF1	100	79.714	ENSONIG00000007676	cpsf1	97	79.786	Oreochromis_niloticus
ENSLAFG00000022601	CPSF1	59	92.857	ENSOANG00000010716	CPSF1	87	92.857	Ornithorhynchus_anatinus
ENSLAFG00000022601	CPSF1	99	77.959	ENSORLG00000013544	cpsf1	92	87.654	Oryzias_latipes
ENSLAFG00000022601	CPSF1	99	78.101	ENSORLG00020021693	cpsf1	92	87.654	Oryzias_latipes_hni
ENSLAFG00000022601	CPSF1	99	78.030	ENSORLG00015009979	cpsf1	97	77.489	Oryzias_latipes_hsok
ENSLAFG00000022601	CPSF1	99	77.928	ENSOMEG00000011849	cpsf1	97	77.458	Oryzias_melastigma
ENSLAFG00000022601	CPSF1	100	95.851	ENSOGAG00000000315	CPSF1	97	95.851	Otolemur_garnettii
ENSLAFG00000022601	CPSF1	100	95.708	ENSPPAG00000019280	CPSF1	97	95.708	Pan_paniscus
ENSLAFG00000022601	CPSF1	100	94.027	ENSPTRG00000051253	-	97	94.027	Pan_troglodytes
ENSLAFG00000022601	CPSF1	100	95.708	ENSPTRG00000049288	-	97	95.708	Pan_troglodytes
ENSLAFG00000022601	CPSF1	99	95.490	ENSPANG00000015005	CPSF1	100	95.490	Papio_anubis
ENSLAFG00000022601	CPSF1	99	80.880	ENSPKIG00000002582	cpsf1	100	80.621	Paramormyrops_kingsleyae
ENSLAFG00000022601	CPSF1	99	93.714	ENSPCIG00000009035	CPSF1	97	93.710	Phascolarctos_cinereus
ENSLAFG00000022601	CPSF1	100	76.343	ENSPFOG00000012870	cpsf1	97	76.553	Poecilia_formosa
ENSLAFG00000022601	CPSF1	100	76.220	ENSPREG00000016307	cpsf1	97	76.639	Poecilia_reticulata
ENSLAFG00000022601	CPSF1	100	86.910	ENSPPYG00000018973	CPSF1	96	87.268	Pongo_abelii
ENSLAFG00000022601	CPSF1	94	94.886	ENSPCAG00000011541	CPSF1	94	94.886	Procavia_capensis
ENSLAFG00000022601	CPSF1	100	92.346	ENSPCOG00000020001	CPSF1	100	89.352	Propithecus_coquereli
ENSLAFG00000022601	CPSF1	90	98.857	ENSPVAG00000006761	CPSF1	88	98.857	Pteropus_vampyrus
ENSLAFG00000022601	CPSF1	100	78.365	ENSPNYG00000004906	cpsf1	99	78.843	Pundamilia_nyererei
ENSLAFG00000022601	CPSF1	99	75.648	ENSPNAG00000024395	cpsf1	96	75.648	Pygocentrus_nattereri
ENSLAFG00000022601	CPSF1	100	95.347	ENSRNOG00000030705	Cpsf1	97	95.347	Rattus_norvegicus
ENSLAFG00000022601	CPSF1	100	95.351	ENSRBIG00000044907	CPSF1	97	95.351	Rhinopithecus_bieti
ENSLAFG00000022601	CPSF1	100	95.279	ENSRROG00000044861	CPSF1	97	95.279	Rhinopithecus_roxellana
ENSLAFG00000022601	CPSF1	99	95.419	ENSSBOG00000027177	CPSF1	100	95.419	Saimiri_boliviensis_boliviensis
ENSLAFG00000022601	CPSF1	99	93.567	ENSSHAG00000006500	CPSF1	97	93.567	Sarcophilus_harrisii
ENSLAFG00000022601	CPSF1	98	80.713	ENSSFOG00015004606	cpsf1	100	80.568	Scleropages_formosus
ENSLAFG00000022601	CPSF1	100	77.879	ENSSMAG00000020547	cpsf1	97	77.879	Scophthalmus_maximus
ENSLAFG00000022601	CPSF1	99	80.029	ENSSDUG00000001100	cpsf1	96	80.245	Seriola_dumerili
ENSLAFG00000022601	CPSF1	99	80.087	ENSSLDG00000003619	cpsf1	96	80.159	Seriola_lalandi_dorsalis
ENSLAFG00000022601	CPSF1	88	91.673	ENSSARG00000003643	CPSF1	88	91.673	Sorex_araneus
ENSLAFG00000022601	CPSF1	99	87.645	ENSSPUG00000014396	CPSF1	99	87.645	Sphenodon_punctatus
ENSLAFG00000022601	CPSF1	100	78.033	ENSSPAG00000005349	cpsf1	97	78.312	Stegastes_partitus
ENSLAFG00000022601	CPSF1	100	95.061	ENSSSCG00000005906	CPSF1	97	95.061	Sus_scrofa
ENSLAFG00000022601	CPSF1	99	77.895	ENSTRUG00000013134	cpsf1	99	77.965	Takifugu_rubripes
ENSLAFG00000022601	CPSF1	100	78.738	ENSTNIG00000014027	cpsf1	97	78.738	Tetraodon_nigroviridis
ENSLAFG00000022601	CPSF1	77	92.193	ENSTBEG00000001756	CPSF1	90	92.193	Tupaia_belangeri
ENSLAFG00000022601	CPSF1	89	96.891	ENSTTRG00000001937	CPSF1	86	96.891	Tursiops_truncatus
ENSLAFG00000022601	CPSF1	100	96.278	ENSUAMG00000006476	CPSF1	98	96.278	Ursus_americanus
ENSLAFG00000022601	CPSF1	99	78.283	ENSXCOG00000003608	cpsf1	96	78.427	Xiphophorus_couchianus
ENSLAFG00000022601	CPSF1	99	77.738	ENSXMAG00000005798	cpsf1	96	77.882	Xiphophorus_maculatus