EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000023090 (Gene tree)
Gene ID: -
Gene Symbol: VARS
Alias: VARS2
Full Name: valyl-tRNA synthetase
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 13255 bases
Position: chrscaffold_138:1338187-1351441
Accession: 100669903
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000017444	tRNA-synt_1g	PF09334.11	5.4e-11	1	1
ENSLAFP00000017444	Anticodon_1	PF08264.13	1.3e-32	1	1
ENSLAFP00000017444	tRNA-synt_1	PF00133.22	3.5e-201	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000022457	VARS-201	3789	XM_003422268	ENSLAFP00000017444	1262 (aa)	XP_003422316	G5E7F5

Gene Model

Click here to download ENSLAFG00000023090's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000023090's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000023090	VARS	83	50.142	ENSLAFG00000015183	VARS2	97	49.811

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000023090	VARS	100	93.354	ENSG00000204394	VARS	100	97.701	Homo_sapiens
ENSLAFG00000023090	VARS	98	63.884	ENSAPOG00000020921	vars	99	63.563	Acanthochromis_polyacanthus
ENSLAFG00000023090	VARS	98	63.884	ENSAPOG00000020691	vars	99	63.563	Acanthochromis_polyacanthus
ENSLAFG00000023090	VARS	100	93.676	ENSAMEG00000006417	VARS	100	93.913	Ailuropoda_melanoleuca
ENSLAFG00000023090	VARS	100	65.146	ENSACIG00000013752	vars	100	65.146	Amphilophus_citrinellus
ENSLAFG00000023090	VARS	100	64.486	ENSAOCG00000002447	vars	100	63.808	Amphiprion_ocellaris
ENSLAFG00000023090	VARS	100	64.330	ENSAPEG00000010638	vars	99	64.330	Amphiprion_percula
ENSLAFG00000023090	VARS	100	64.409	ENSATEG00000020219	vars	100	63.909	Anabas_testudineus
ENSLAFG00000023090	VARS	90	70.920	ENSACAG00000029133	-	99	70.920	Anolis_carolinensis
ENSLAFG00000023090	VARS	100	93.434	ENSANAG00000015453	VARS	100	93.829	Aotus_nancymaae
ENSLAFG00000023090	VARS	100	64.697	ENSACLG00000025699	vars	97	64.697	Astatotilapia_calliptera
ENSLAFG00000023090	VARS	94	65.526	ENSAMXG00000017716	vars	95	65.526	Astyanax_mexicanus
ENSLAFG00000023090	VARS	100	93.513	ENSBTAG00000005631	VARS	100	93.987	Bos_taurus
ENSLAFG00000023090	VARS	100	93.592	ENSCJAG00000002604	VARS	100	93.987	Callithrix_jacchus
ENSLAFG00000023090	VARS	100	92.959	ENSCAFG00000000636	VARS	100	93.196	Canis_familiaris
ENSLAFG00000023090	VARS	94	93.328	ENSCAFG00020020790	VARS	96	93.581	Canis_lupus_dingo
ENSLAFG00000023090	VARS	100	93.592	ENSCHIG00000011008	VARS	100	94.066	Capra_hircus
ENSLAFG00000023090	VARS	100	93.275	ENSTSYG00000001567	VARS	100	93.671	Carlito_syrichta
ENSLAFG00000023090	VARS	91	89.619	ENSCAPG00000013736	VARS	99	89.273	Cavia_aperea
ENSLAFG00000023090	VARS	100	90.823	ENSCPOG00000000870	VARS	100	90.506	Cavia_porcellus
ENSLAFG00000023090	VARS	100	94.225	ENSCCAG00000035656	VARS	100	93.750	Cebus_capucinus
ENSLAFG00000023090	VARS	100	93.829	ENSCATG00000022394	VARS	100	93.354	Cercocebus_atys
ENSLAFG00000023090	VARS	88	88.714	ENSCLAG00000009470	VARS	92	88.364	Chinchilla_lanigera
ENSLAFG00000023090	VARS	100	94.146	ENSCSAG00000008784	VARS	100	93.671	Chlorocebus_sabaeus
ENSLAFG00000023090	VARS	77	74.333	ENSCPBG00000007943	VARS	96	74.333	Chrysemys_picta_bellii
ENSLAFG00000023090	VARS	100	94.146	ENSCANG00000033570	VARS	100	93.671	Colobus_angolensis_palliatus
ENSLAFG00000023090	VARS	100	91.139	ENSCGRG00001005686	Vars	100	91.614	Cricetulus_griseus_chok1gshd
ENSLAFG00000023090	VARS	92	85.930	ENSCGRG00000013352	Vars	78	86.432	Cricetulus_griseus_crigri
ENSLAFG00000023090	VARS	100	64.241	ENSCSEG00000019652	vars	100	64.161	Cynoglossus_semilaevis
ENSLAFG00000023090	VARS	100	65.008	ENSCVAG00000022398	vars	100	65.086	Cyprinodon_variegatus
ENSLAFG00000023090	VARS	100	64.075	ENSDARG00000044575	vars	100	64.230	Danio_rerio
ENSLAFG00000023090	VARS	84	91.345	ENSDORG00000016433	Vars	95	90.969	Dipodomys_ordii
ENSLAFG00000023090	VARS	68	87.730	ENSETEG00000003824	VARS	77	87.730	Echinops_telfairi
ENSLAFG00000023090	VARS	57	62.500	ENSEBUG00000004637	vars	100	62.775	Eptatretus_burgeri
ENSLAFG00000023090	VARS	50	71.273	ENSEBUG00000007086	vars	83	70.299	Eptatretus_burgeri
ENSLAFG00000023090	VARS	100	94.620	ENSEASG00005015673	VARS	100	95.016	Equus_asinus_asinus
ENSLAFG00000023090	VARS	100	94.387	ENSECAG00000014620	VARS	100	95.099	Equus_caballus
ENSLAFG00000023090	VARS	83	89.619	ENSEEUG00000004116	VARS	83	89.619	Erinaceus_europaeus
ENSLAFG00000023090	VARS	100	64.071	ENSELUG00000006550	vars	97	64.181	Esox_lucius
ENSLAFG00000023090	VARS	100	93.434	ENSFCAG00000004510	VARS	100	93.750	Felis_catus
ENSLAFG00000023090	VARS	82	91.546	ENSFDAG00000011401	VARS	100	91.546	Fukomys_damarensis
ENSLAFG00000023090	VARS	100	65.008	ENSFHEG00000010672	vars	100	65.086	Fundulus_heteroclitus
ENSLAFG00000023090	VARS	92	66.055	ENSGMOG00000014908	vars	97	66.222	Gadus_morhua
ENSLAFG00000023090	VARS	100	65.421	ENSGAFG00000021630	vars	100	65.421	Gambusia_affinis
ENSLAFG00000023090	VARS	92	65.995	ENSGACG00000009601	vars	98	65.638	Gasterosteus_aculeatus
ENSLAFG00000023090	VARS	50	64.082	ENSGAGG00000006508	-	91	63.924	Gopherus_agassizii
ENSLAFG00000023090	VARS	100	94.462	ENSGGOG00000011364	VARS	100	93.987	Gorilla_gorilla
ENSLAFG00000023090	VARS	100	64.697	ENSHBUG00000017151	vars	97	64.697	Haplochromis_burtoni
ENSLAFG00000023090	VARS	100	90.024	ENSHGLG00000011646	VARS	100	90.024	Heterocephalus_glaber_female
ENSLAFG00000023090	VARS	93	81.712	ENSHGLG00100018062	VARS	100	81.546	Heterocephalus_glaber_male
ENSLAFG00000023090	VARS	99	64.798	ENSHCOG00000012198	vars	99	64.798	Hippocampus_comes
ENSLAFG00000023090	VARS	100	64.591	ENSIPUG00000005218	vars	100	64.747	Ictalurus_punctatus
ENSLAFG00000023090	VARS	100	93.439	ENSSTOG00000013112	VARS	100	93.043	Ictidomys_tridecemlineatus
ENSLAFG00000023090	VARS	100	71.813	ENSJJAG00000015343	-	99	73.392	Jaculus_jaculus
ENSLAFG00000023090	VARS	100	90.736	ENSJJAG00000019749	-	100	90.736	Jaculus_jaculus
ENSLAFG00000023090	VARS	100	64.664	ENSKMAG00000009455	vars	100	64.664	Kryptolebias_marmoratus
ENSLAFG00000023090	VARS	100	64.003	ENSLBEG00000010341	vars	100	63.687	Labrus_bergylta
ENSLAFG00000023090	VARS	94	62.120	ENSLACG00000015232	VARS	99	62.459	Latimeria_chalumnae
ENSLAFG00000023090	VARS	100	66.302	ENSLOCG00000004240	vars	100	66.380	Lepisosteus_oculatus
ENSLAFG00000023090	VARS	100	94.066	ENSMFAG00000001032	VARS	100	93.592	Macaca_fascicularis
ENSLAFG00000023090	VARS	100	94.066	ENSMMUG00000006828	VARS	100	93.592	Macaca_mulatta
ENSLAFG00000023090	VARS	100	94.066	ENSMNEG00000042072	VARS	100	93.592	Macaca_nemestrina
ENSLAFG00000023090	VARS	100	93.987	ENSMLEG00000039307	VARS	100	93.513	Mandrillus_leucophaeus
ENSLAFG00000023090	VARS	100	64.481	ENSMAMG00000003949	vars	100	64.715	Mastacembelus_armatus
ENSLAFG00000023090	VARS	100	64.697	ENSMZEG00005018327	vars	100	64.060	Maylandia_zebra
ENSLAFG00000023090	VARS	100	90.665	ENSMAUG00000006715	Vars	100	91.218	Mesocricetus_auratus
ENSLAFG00000023090	VARS	100	93.354	ENSMICG00000003548	VARS	100	93.038	Microcebus_murinus
ENSLAFG00000023090	VARS	100	89.620	ENSMOCG00000015404	Vars	100	89.620	Microtus_ochrogaster
ENSLAFG00000023090	VARS	100	63.865	ENSMMOG00000015801	vars	100	63.708	Mola_mola
ENSLAFG00000023090	VARS	100	86.313	ENSMODG00000015204	-	100	85.839	Monodelphis_domestica
ENSLAFG00000023090	VARS	99	64.432	ENSMALG00000022532	vars	99	64.258	Monopterus_albus
ENSLAFG00000023090	VARS	100	92.716	MGP_CAROLIEiJ_G0021491	Vars	100	92.716	Mus_caroli
ENSLAFG00000023090	VARS	100	92.637	ENSMUSG00000007029	Vars	100	92.637	Mus_musculus
ENSLAFG00000023090	VARS	100	92.320	MGP_PahariEiJ_G0020486	Vars	100	92.320	Mus_pahari
ENSLAFG00000023090	VARS	100	92.716	MGP_SPRETEiJ_G0022396	Vars	100	92.716	Mus_spretus
ENSLAFG00000023090	VARS	100	93.275	ENSMPUG00000010821	VARS	100	93.513	Mustela_putorius_furo
ENSLAFG00000023090	VARS	78	93.623	ENSMLUG00000013126	VARS	100	93.623	Myotis_lucifugus
ENSLAFG00000023090	VARS	100	91.370	ENSNGAG00000012151	Vars	100	91.370	Nannospalax_galili
ENSLAFG00000023090	VARS	100	64.386	ENSNBRG00000020520	vars	100	64.386	Neolamprologus_brichardi
ENSLAFG00000023090	VARS	100	92.642	ENSNLEG00000006351	VARS	100	93.038	Nomascus_leucogenys
ENSLAFG00000023090	VARS	100	81.804	ENSMEUG00000011378	VARS	100	82.199	Notamacropus_eugenii
ENSLAFG00000023090	VARS	100	91.930	ENSOPRG00000003607	VARS	100	92.405	Ochotona_princeps
ENSLAFG00000023090	VARS	100	90.103	ENSODEG00000017681	VARS	100	90.103	Octodon_degus
ENSLAFG00000023090	VARS	100	65.020	ENSONIG00000013064	vars	99	68.146	Oreochromis_niloticus
ENSLAFG00000023090	VARS	77	78.359	ENSOANG00000005400	VARS	98	77.883	Ornithorhynchus_anatinus
ENSLAFG00000023090	VARS	100	91.291	ENSOCUG00000022463	VARS	100	91.291	Oryctolagus_cuniculus
ENSLAFG00000023090	VARS	100	64.484	ENSORLG00000013063	vars	100	64.484	Oryzias_latipes
ENSLAFG00000023090	VARS	100	64.892	ENSORLG00020003504	vars	100	64.892	Oryzias_latipes_hni
ENSLAFG00000023090	VARS	100	64.756	ENSORLG00015009001	vars	100	64.833	Oryzias_latipes_hsok
ENSLAFG00000023090	VARS	100	64.479	ENSOMEG00000015016	vars	100	64.556	Oryzias_melastigma
ENSLAFG00000023090	VARS	100	93.038	ENSOGAG00000007515	VARS	100	93.038	Otolemur_garnettii
ENSLAFG00000023090	VARS	100	93.592	ENSPPAG00000034012	VARS	100	93.987	Pan_paniscus
ENSLAFG00000023090	VARS	100	93.592	ENSPPRG00000014855	VARS	100	93.908	Panthera_pardus
ENSLAFG00000023090	VARS	85	93.309	ENSPTIG00000010462	VARS	95	93.681	Panthera_tigris_altaica
ENSLAFG00000023090	VARS	100	93.671	ENSPTRG00000017985	VARS	100	94.066	Pan_troglodytes
ENSLAFG00000023090	VARS	100	92.429	ENSPANG00000014565	VARS	100	91.956	Papio_anubis
ENSLAFG00000023090	VARS	100	63.833	ENSPKIG00000016304	vars	100	63.833	Paramormyrops_kingsleyae
ENSLAFG00000023090	VARS	100	65.272	ENSPMGG00000023909	vars	100	65.193	Periophthalmus_magnuspinnatus
ENSLAFG00000023090	VARS	100	91.930	ENSPEMG00000006639	Vars	100	92.326	Peromyscus_maniculatus_bairdii
ENSLAFG00000023090	VARS	100	85.759	ENSPCIG00000018553	VARS	100	85.285	Phascolarctos_cinereus
ENSLAFG00000023090	VARS	100	65.576	ENSPFOG00000015690	vars	100	65.576	Poecilia_formosa
ENSLAFG00000023090	VARS	100	65.984	ENSPLAG00000009590	vars	100	65.984	Poecilia_latipinna
ENSLAFG00000023090	VARS	100	65.576	ENSPMEG00000004708	vars	100	65.576	Poecilia_mexicana
ENSLAFG00000023090	VARS	100	63.672	ENSPREG00000013264	vars	100	63.344	Poecilia_reticulata
ENSLAFG00000023090	VARS	100	92.642	ENSPPYG00000016460	VARS	100	92.642	Pongo_abelii
ENSLAFG00000023090	VARS	86	93.896	ENSPCAG00000013565	VARS	86	93.896	Procavia_capensis
ENSLAFG00000023090	VARS	100	93.439	ENSPCOG00000010942	VARS	100	94.150	Propithecus_coquereli
ENSLAFG00000023090	VARS	100	90.585	ENSPVAG00000012403	VARS	100	90.111	Pteropus_vampyrus
ENSLAFG00000023090	VARS	100	64.697	ENSPNYG00000022511	vars	100	64.697	Pundamilia_nyererei
ENSLAFG00000023090	VARS	100	64.158	ENSPNAG00000020962	vars	100	64.236	Pygocentrus_nattereri
ENSLAFG00000023090	VARS	100	93.196	ENSRNOG00000000867	Vars	100	93.196	Rattus_norvegicus
ENSLAFG00000023090	VARS	100	94.225	ENSRBIG00000041669	VARS	100	93.750	Rhinopithecus_bieti
ENSLAFG00000023090	VARS	100	94.225	ENSRROG00000045490	VARS	100	93.750	Rhinopithecus_roxellana
ENSLAFG00000023090	VARS	100	93.117	ENSSBOG00000035402	VARS	100	93.513	Saimiri_boliviensis_boliviensis
ENSLAFG00000023090	VARS	100	81.147	ENSSHAG00000006937	VARS	100	80.990	Sarcophilus_harrisii
ENSLAFG00000023090	VARS	100	64.683	ENSSFOG00015014272	vars	100	64.683	Scleropages_formosus
ENSLAFG00000023090	VARS	100	63.432	ENSSMAG00000009596	vars	99	63.432	Scophthalmus_maximus
ENSLAFG00000023090	VARS	100	63.975	ENSSDUG00000014177	vars	100	64.053	Seriola_dumerili
ENSLAFG00000023090	VARS	100	64.208	ENSSLDG00000025316	vars	100	64.286	Seriola_lalandi_dorsalis
ENSLAFG00000023090	VARS	100	64.614	ENSSPAG00000017068	vars	100	64.614	Stegastes_partitus
ENSLAFG00000023090	VARS	100	92.411	ENSSSCG00000038950	VARS	100	93.123	Sus_scrofa
ENSLAFG00000023090	VARS	82	63.724	ENSTRUG00000012307	vars	98	63.671	Takifugu_rubripes
ENSLAFG00000023090	VARS	100	64.471	ENSTNIG00000008011	vars	100	64.471	Tetraodon_nigroviridis
ENSLAFG00000023090	VARS	54	95.131	ENSTBEG00000004728	-	60	95.131	Tupaia_belangeri
ENSLAFG00000023090	VARS	100	85.918	ENSTTRG00000014128	VARS	100	85.839	Tursiops_truncatus
ENSLAFG00000023090	VARS	100	90.063	ENSUAMG00000010424	VARS	100	90.376	Ursus_americanus
ENSLAFG00000023090	VARS	93	94.921	ENSUMAG00000013486	VARS	98	95.238	Ursus_maritimus
ENSLAFG00000023090	VARS	100	93.281	ENSVVUG00000021323	VARS	100	93.439	Vulpes_vulpes
ENSLAFG00000023090	VARS	96	62.702	ENSXETG00000024076	vars	98	62.591	Xenopus_tropicalis
ENSLAFG00000023090	VARS	100	65.406	ENSXCOG00000019172	vars	100	65.406	Xiphophorus_couchianus
ENSLAFG00000023090	VARS	100	65.421	ENSXMAG00000010927	vars	100	65.421	Xiphophorus_maculatus