EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000023183 (Gene tree)
Gene ID: -
Gene Symbol: CHD1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 63024 bases
Position: chrscaffold_1:11038423-11101446
Accession: 1915
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000020482	ResIII	PF04851.15	1.2e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000021600	CHD1-201	5079	-	ENSLAFP00000017447	1692 (aa)	-	G5E7F8
ENSLAFT00000031297	CHD1-202	3207	-	ENSLAFP00000020482	1068 (aa)	-	G3TY24

Gene Model

Click here to download ENSLAFG00000023183's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000023183's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000023183	CHD1	50	42.884	ENSLAFG00000000896	SMARCA1	54	42.021
ENSLAFG00000023183	CHD1	97	64.562	ENSLAFG00000016885	-	98	75.556
ENSLAFG00000023183	CHD1	50	42.199	ENSLAFG00000007049	HELLS	56	50.259

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000023183	CHD1	99	95.154	ENSG00000153922	CHD1	63	95.154	Homo_sapiens
ENSLAFG00000023183	CHD1	76	83.150	ENSAPOG00000005764	chd1	69	83.641	Acanthochromis_polyacanthus
ENSLAFG00000023183	CHD1	81	80.113	ENSAOCG00000023105	chd1	56	80.113	Amphiprion_ocellaris
ENSLAFG00000023183	CHD1	81	82.054	ENSAPEG00000013544	chd1	56	82.054	Amphiprion_percula
ENSLAFG00000023183	CHD1	84	81.518	ENSATEG00000010676	chd1	55	81.518	Anabas_testudineus
ENSLAFG00000023183	CHD1	81	82.339	ENSAMXG00000010843	chd1	67	82.339	Astyanax_mexicanus
ENSLAFG00000023183	CHD1	99	94.977	ENSCATG00000032035	CHD1	63	95.318	Cercocebus_atys
ENSLAFG00000023183	CHD1	99	94.977	ENSCSAG00000015339	CHD1	63	94.977	Chlorocebus_sabaeus
ENSLAFG00000023183	CHD1	99	92.150	ENSCANG00000036916	CHD1	62	92.150	Colobus_angolensis_palliatus
ENSLAFG00000023183	CHD1	94	93.583	ENSCGRG00001023943	Chd1	59	94.669	Cricetulus_griseus_chok1gshd
ENSLAFG00000023183	CHD1	94	93.583	ENSCGRG00000008652	Chd1	59	94.669	Cricetulus_griseus_crigri
ENSLAFG00000023183	CHD1	80	83.043	ENSCSEG00000009553	chd1	56	81.448	Cynoglossus_semilaevis
ENSLAFG00000023183	CHD1	98	95.558	ENSEASG00005016110	CHD1	75	95.558	Equus_asinus_asinus
ENSLAFG00000023183	CHD1	82	80.493	ENSELUG00000017677	chd1	54	81.038	Esox_lucius
ENSLAFG00000023183	CHD1	82	82.167	ENSFHEG00000021164	chd1	65	82.167	Fundulus_heteroclitus
ENSLAFG00000023183	CHD1	93	75.746	ENSGMOG00000001537	chd1	56	75.794	Gadus_morhua
ENSLAFG00000023183	CHD1	86	90.548	ENSGALG00000031327	-	57	90.548	Gallus_gallus
ENSLAFG00000023183	CHD1	91	83.380	ENSGAFG00000019880	chd1	61	83.380	Gambusia_affinis
ENSLAFG00000023183	CHD1	99	95.506	ENSGGOG00000011463	CHD1	64	95.506	Gorilla_gorilla
ENSLAFG00000023183	CHD1	80	83.856	ENSHCOG00000014222	chd1	55	82.095	Hippocampus_comes
ENSLAFG00000023183	CHD1	79	86.118	ENSIPUG00000001369	chd1	56	83.128	Ictalurus_punctatus
ENSLAFG00000023183	CHD1	99	95.051	ENSMFAG00000031226	CHD1	63	95.051	Macaca_fascicularis
ENSLAFG00000023183	CHD1	99	94.884	ENSMMUG00000014090	CHD1	75	94.884	Macaca_mulatta
ENSLAFG00000023183	CHD1	99	95.033	ENSMNEG00000045073	CHD1	63	95.033	Macaca_nemestrina
ENSLAFG00000023183	CHD1	99	88.649	ENSMLEG00000041096	CHD1	61	88.649	Mandrillus_leucophaeus
ENSLAFG00000023183	CHD1	83	81.042	ENSMZEG00005010957	chd1	69	80.263	Maylandia_zebra
ENSLAFG00000023183	CHD1	71	66.881	ENSMGAG00000008369	-	100	66.325	Meleagris_gallopavo
ENSLAFG00000023183	CHD1	94	94.274	ENSMOCG00000019121	Chd1	60	94.274	Microtus_ochrogaster
ENSLAFG00000023183	CHD1	70	93.263	ENSMODG00000019266	-	100	93.263	Monodelphis_domestica
ENSLAFG00000023183	CHD1	94	76.931	ENSMALG00000013317	chd1	71	76.696	Monopterus_albus
ENSLAFG00000023183	CHD1	99	93.178	MGP_CAROLIEiJ_G0021099	Chd1	94	94.368	Mus_caroli
ENSLAFG00000023183	CHD1	99	93.190	ENSMUSG00000023852	Chd1	94	94.576	Mus_musculus
ENSLAFG00000023183	CHD1	94	93.590	MGP_PahariEiJ_G0023414	Chd1	94	94.675	Mus_pahari
ENSLAFG00000023183	CHD1	82	81.736	ENSNBRG00000006860	chd1	56	81.736	Neolamprologus_brichardi
ENSLAFG00000023183	CHD1	99	95.229	ENSNLEG00000014493	CHD1	62	95.229	Nomascus_leucogenys
ENSLAFG00000023183	CHD1	94	91.593	ENSOANG00000004891	CHD1	59	91.921	Ornithorhynchus_anatinus
ENSLAFG00000023183	CHD1	94	76.870	ENSORLG00015016725	chd1	93	77.100	Oryzias_latipes_hsok
ENSLAFG00000023183	CHD1	99	93.216	ENSPPAG00000043367	CHD1	63	93.216	Pan_paniscus
ENSLAFG00000023183	CHD1	99	95.323	ENSPTRG00000017103	CHD1	63	95.323	Pan_troglodytes
ENSLAFG00000023183	CHD1	99	95.051	ENSPANG00000006387	CHD1	63	95.051	Papio_anubis
ENSLAFG00000023183	CHD1	82	74.689	ENSPKIG00000024719	chd1	52	74.689	Paramormyrops_kingsleyae
ENSLAFG00000023183	CHD1	84	82.444	ENSPMGG00000005785	chd1	68	82.444	Periophthalmus_magnuspinnatus
ENSLAFG00000023183	CHD1	94	94.181	ENSPEMG00000015939	Chd1	59	94.181	Peromyscus_maniculatus_bairdii
ENSLAFG00000023183	CHD1	78	74.408	ENSPLAG00000006473	-	85	75.895	Poecilia_latipinna
ENSLAFG00000023183	CHD1	94	76.500	ENSPREG00000004209	chd1	60	77.646	Poecilia_reticulata
ENSLAFG00000023183	CHD1	94	93.880	ENSRNOG00000014434	Chd1	71	93.880	Rattus_norvegicus
ENSLAFG00000023183	CHD1	99	95.145	ENSRBIG00000044325	CHD1	65	95.070	Rhinopithecus_bieti
ENSLAFG00000023183	CHD1	99	95.070	ENSRROG00000001726	CHD1	63	95.412	Rhinopithecus_roxellana
ENSLAFG00000023183	CHD1	82	82.751	ENSSFOG00015007161	chd1	65	82.063	Scleropages_formosus
ENSLAFG00000023183	CHD1	94	76.991	ENSSDUG00000018314	chd1	71	77.081	Seriola_dumerili
ENSLAFG00000023183	CHD1	81	81.911	ENSSLDG00000017244	chd1	88	81.911	Seriola_lalandi_dorsalis
ENSLAFG00000023183	CHD1	94	77.067	ENSSPAG00000007024	chd1	71	77.375	Stegastes_partitus
ENSLAFG00000023183	CHD1	99	95.238	ENSSSCG00000014177	CHD1	72	95.238	Sus_scrofa
ENSLAFG00000023183	CHD1	84	79.425	ENSTRUG00000010282	chd1	59	76.186	Takifugu_rubripes
ENSLAFG00000023183	CHD1	94	75.321	ENSTNIG00000007101	chd1	78	76.337	Tetraodon_nigroviridis
ENSLAFG00000023183	CHD1	94	76.401	ENSXCOG00000017184	chd1	62	75.470	Xiphophorus_couchianus
ENSLAFG00000023183	CHD1	94	76.303	ENSXMAG00000014538	chd1	74	77.448	Xiphophorus_maculatus