EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSLAFG00000023358 (Gene tree)
Gene ID
-
Gene Symbol
UPF3A
Alias
HUPF3A|RENT3A|UPF3
Full Name
UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Loxodonta_africana
Status
putative
Strand
Minus strand
Length
32628 bases
Position
chrscaffold_27:12162930-12195557
Accession
20332
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSLAFP00000017421Smg4_UPF3PF03467.151.7e-5011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSLAFT00000023121UPF3A-2011257-ENSLAFP00000017421419 (aa)-G5E7D9
Gene Model
Click here to download ENSLAFG00000023358's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000023358's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSLAFG00000023358UPF3A9943.632ENSLAFG00000001267UPF3B8842.494
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSLAFG00000023358UPF3A9943.468ENSG00000125351UPF3B7267.516Homo_sapiens
ENSLAFG00000023358UPF3A9959.770ENSG00000169062UPF3A8659.770Homo_sapiens
ENSLAFG00000023358UPF3A5752.720ENSAPOG00000012775upf3b8942.308Acanthochromis_polyacanthus
ENSLAFG00000023358UPF3A9960.748ENSAMEG00000004259UPF3A8960.829Ailuropoda_melanoleuca
ENSLAFG00000023358UPF3A9943.705ENSAMEG00000000163UPF3B8944.076Ailuropoda_melanoleuca
ENSLAFG00000023358UPF3A9961.972ENSACAG00000001540UPF3A9961.972Anolis_carolinensis
ENSLAFG00000023358UPF3A9942.857ENSACAG00000003625UPF3B9142.857Anolis_carolinensis
ENSLAFG00000023358UPF3A9944.181ENSANAG00000021894-7367.089Aotus_nancymaae
ENSLAFG00000023358UPF3A9942.417ENSANAG00000025598-6867.742Aotus_nancymaae
ENSLAFG00000023358UPF3A9959.080ENSANAG00000021713UPF3A8559.404Aotus_nancymaae
ENSLAFG00000023358UPF3A9549.261ENSAMXG00000002608upf3a8350.739Astyanax_mexicanus
ENSLAFG00000023358UPF3A9943.943ENSCJAG00000004975UPF3B7367.089Callithrix_jacchus
ENSLAFG00000023358UPF3A9959.259ENSCJAG00000019102UPF3A8559.207Callithrix_jacchus
ENSLAFG00000023358UPF3A9942.032ENSCAFG00000018426UPF3B8942.396Canis_familiaris
ENSLAFG00000023358UPF3A9860.095ENSCAFG00000006504UPF3A8560.476Canis_familiaris
ENSLAFG00000023358UPF3A9941.330ENSCAFG00020004074UPF3B7872.727Canis_lupus_dingo
ENSLAFG00000023358UPF3A9960.187ENSCAFG00020014268UPF3A8460.563Canis_lupus_dingo
ENSLAFG00000023358UPF3A9643.133ENSCHIG00000018011-8056.731Capra_hircus
ENSLAFG00000023358UPF3A9359.799ENSCHIG00000008682UPF3A7659.799Capra_hircus
ENSLAFG00000023358UPF3A9942.494ENSCHIG00000000247-8942.857Capra_hircus
ENSLAFG00000023358UPF3A9943.705ENSTSYG00000014690UPF3B8352.093Carlito_syrichta
ENSLAFG00000023358UPF3A8751.554ENSTSYG00000001918UPF3A9651.414Carlito_syrichta
ENSLAFG00000023358UPF3A8159.763ENSCPOG00000006824UPF3A7559.593Cavia_porcellus
ENSLAFG00000023358UPF3A9960.460ENSCCAG00000018406UPF3A8660.460Cebus_capucinus
ENSLAFG00000023358UPF3A9236.816ENSCCAG00000029813-8239.295Cebus_capucinus
ENSLAFG00000023358UPF3A9943.230ENSCATG00000017506UPF3B7367.089Cercocebus_atys
ENSLAFG00000023358UPF3A9959.310ENSCATG00000029733UPF3A8559.259Cercocebus_atys
ENSLAFG00000023358UPF3A5854.321ENSCLAG00000003260UPF3B8944.550Chinchilla_lanigera
ENSLAFG00000023358UPF3A9942.263ENSCSAG00000018348UPF3B8943.548Chlorocebus_sabaeus
ENSLAFG00000023358UPF3A9958.161ENSCSAG00000017388UPF3A8558.161Chlorocebus_sabaeus
ENSLAFG00000023358UPF3A9344.529ENSCGRG00001006858-8345.293Cricetulus_griseus_chok1gshd
ENSLAFG00000023358UPF3A8658.011ENSCGRG00001017387Upf3a8057.297Cricetulus_griseus_chok1gshd
ENSLAFG00000023358UPF3A5555.022ENSCGRG00001013643-8148.515Cricetulus_griseus_chok1gshd
ENSLAFG00000023358UPF3A9943.095ENSCGRG00000007627Upf3b9345.408Cricetulus_griseus_crigri
ENSLAFG00000023358UPF3A8658.011ENSCGRG00000001468Upf3a8057.297Cricetulus_griseus_crigri
ENSLAFG00000023358UPF3A9342.394ENSCSEG00000002046upf3b8742.958Cynoglossus_semilaevis
ENSLAFG00000023358UPF3A8375.793ENSDNOG00000034391UPF3A7575.793Dasypus_novemcinctus
ENSLAFG00000023358UPF3A9942.857ENSDNOG00000008665UPF3B8943.218Dasypus_novemcinctus
ENSLAFG00000023358UPF3A9644.665ENSDORG00000006077Upf3b8545.161Dipodomys_ordii
ENSLAFG00000023358UPF3A9858.392ENSETEG00000010110UPF3A8259.512Echinops_telfairi
ENSLAFG00000023358UPF3A9944.076ENSEASG00005012919UPF3B7869.355Equus_asinus_asinus
ENSLAFG00000023358UPF3A10062.005ENSEASG00005021884UPF3A8461.982Equus_asinus_asinus
ENSLAFG00000023358UPF3A10061.772ENSECAG00000017141UPF3A8461.751Equus_caballus
ENSLAFG00000023358UPF3A9944.076ENSECAG00000016947UPF3B7860.317Equus_caballus
ENSLAFG00000023358UPF3A9942.755ENSFCAG00000004388UPF3B8544.444Felis_catus
ENSLAFG00000023358UPF3A9859.390ENSFCAG00000014602UPF3A8660.093Felis_catus
ENSLAFG00000023358UPF3A9943.943ENSFDAG00000018869UPF3B8944.313Fukomys_damarensis
ENSLAFG00000023358UPF3A5752.917ENSGMOG00000001621upf3b8941.781Gadus_morhua
ENSLAFG00000023358UPF3A5752.720ENSGACG00000017435upf3b9042.263Gasterosteus_aculeatus
ENSLAFG00000023358UPF3A9343.812ENSGAGG00000001219UPF3B8544.499Gopherus_agassizii
ENSLAFG00000023358UPF3A9951.954ENSGGOG00000041219-9152.874Gorilla_gorilla
ENSLAFG00000023358UPF3A9959.540ENSGGOG00000015428UPF3A8659.540Gorilla_gorilla
ENSLAFG00000023358UPF3A9952.074ENSGGOG00000043074-8751.494Gorilla_gorilla
ENSLAFG00000023358UPF3A9943.468ENSGGOG00000023995UPF3B8356.731Gorilla_gorilla
ENSLAFG00000023358UPF3A9943.705ENSHGLG00000019582-8944.076Heterocephalus_glaber_female
ENSLAFG00000023358UPF3A8159.475ENSHGLG00000001544UPF3A7460.411Heterocephalus_glaber_female
ENSLAFG00000023358UPF3A6546.863ENSHGLG00000011189-8542.424Heterocephalus_glaber_female
ENSLAFG00000023358UPF3A6546.863ENSHGLG00100001889-8541.873Heterocephalus_glaber_male
ENSLAFG00000023358UPF3A9941.706ENSHGLG00100002042-8843.468Heterocephalus_glaber_male
ENSLAFG00000023358UPF3A8159.475ENSHGLG00100013244UPF3A7460.411Heterocephalus_glaber_male
ENSLAFG00000023358UPF3A9551.106ENSIPUG00000023450upf3a8351.597Ictalurus_punctatus
ENSLAFG00000023358UPF3A9944.418ENSSTOG00000001101UPF3B8944.787Ictidomys_tridecemlineatus
ENSLAFG00000023358UPF3A9943.230ENSJJAG00000000053Upf3b8544.665Jaculus_jaculus
ENSLAFG00000023358UPF3A5750.407ENSLBEG00000028689upf3b5252.033Labrus_bergylta
ENSLAFG00000023358UPF3A7349.112ENSLACG00000006645UPF3A9549.112Latimeria_chalumnae
ENSLAFG00000023358UPF3A9851.551ENSLOCG00000002665upf3a8751.551Lepisosteus_oculatus
ENSLAFG00000023358UPF3A5555.217ENSLOCG00000015238upf3b9143.780Lepisosteus_oculatus
ENSLAFG00000023358UPF3A9943.230ENSMFAG00000045414UPF3B7367.089Macaca_fascicularis
ENSLAFG00000023358UPF3A9957.477ENSMFAG00000045016UPF3A8558.837Macaca_fascicularis
ENSLAFG00000023358UPF3A9260.957ENSMMUG00000007449UPF3A8859.165Macaca_mulatta
ENSLAFG00000023358UPF3A9943.230ENSMMUG00000020222UPF3B7367.089Macaca_mulatta
ENSLAFG00000023358UPF3A9959.259ENSMNEG00000036402UPF3A8359.259Macaca_nemestrina
ENSLAFG00000023358UPF3A9943.230ENSMNEG00000039794UPF3B7367.089Macaca_nemestrina
ENSLAFG00000023358UPF3A9943.230ENSMLEG00000010999UPF3B7367.089Mandrillus_leucophaeus
ENSLAFG00000023358UPF3A9959.028ENSMLEG00000014726UPF3A9459.028Mandrillus_leucophaeus
ENSLAFG00000023358UPF3A9549.296ENSMAMG00000018364upf3a8349.296Mastacembelus_armatus
ENSLAFG00000023358UPF3A9461.500ENSMGAG00000014837UPF3A9561.500Meleagris_gallopavo
ENSLAFG00000023358UPF3A9943.943ENSMAUG00000008705Upf3b8844.656Mesocricetus_auratus
ENSLAFG00000023358UPF3A9743.333ENSMOCG00000017893Upf3b8643.499Microtus_ochrogaster
ENSLAFG00000023358UPF3A6064.822ENSMOCG00000000550Upf3a7066.403Microtus_ochrogaster
ENSLAFG00000023358UPF3A9745.985ENSMODG00000010232UPF3B9645.985Monodelphis_domestica
ENSLAFG00000023358UPF3A9966.901ENSMODG00000003159UPF3A9666.588Monodelphis_domestica
ENSLAFG00000023358UPF3A9944.550MGP_CAROLIEiJ_G0032999Upf3b8944.550Mus_caroli
ENSLAFG00000023358UPF3A8359.942MGP_CAROLIEiJ_G0030848Upf3a7560.519Mus_caroli
ENSLAFG00000023358UPF3A8361.671ENSMUSG00000038398Upf3a7662.500Mus_musculus
ENSLAFG00000023358UPF3A9943.943ENSMUSG00000036572Upf3b8944.656Mus_musculus
ENSLAFG00000023358UPF3A9944.313MGP_PahariEiJ_G0031543Upf3b8944.313Mus_pahari
ENSLAFG00000023358UPF3A8360.519MGP_PahariEiJ_G0021311Upf3a7660.511Mus_pahari
ENSLAFG00000023358UPF3A9943.943MGP_SPRETEiJ_G0034152Upf3b8944.656Mus_spretus
ENSLAFG00000023358UPF3A8361.960MGP_SPRETEiJ_G0031958Upf3a7662.784Mus_spretus
ENSLAFG00000023358UPF3A9743.873ENSMPUG00000001531UPF3B8844.254Mustela_putorius_furo
ENSLAFG00000023358UPF3A10060.373ENSMPUG00000009139UPF3A8360.599Mustela_putorius_furo
ENSLAFG00000023358UPF3A9943.468ENSMLUG00000010821UPF3B8944.313Myotis_lucifugus
ENSLAFG00000023358UPF3A10063.194ENSMLUG00000015905UPF3A9763.699Myotis_lucifugus
ENSLAFG00000023358UPF3A8560.112ENSNGAG00000019314Upf3a7860.665Nannospalax_galili
ENSLAFG00000023358UPF3A9944.418ENSNGAG00000008231Upf3b8944.418Nannospalax_galili
ENSLAFG00000023358UPF3A9943.230ENSNLEG00000014897UPF3B8944.550Nomascus_leucogenys
ENSLAFG00000023358UPF3A9959.310ENSNLEG00000007563UPF3A8559.310Nomascus_leucogenys
ENSLAFG00000023358UPF3A6871.613ENSMEUG00000015615UPF3B7864.972Notamacropus_eugenii
ENSLAFG00000023358UPF3A6448.736ENSOPRG00000008846-6051.264Ochotona_princeps
ENSLAFG00000023358UPF3A9942.721ENSODEG00000002186-8843.095Octodon_degus
ENSLAFG00000023358UPF3A9744.471ENSOANG00000002594-9644.471Ornithorhynchus_anatinus
ENSLAFG00000023358UPF3A8358.960ENSOANG00000006985-8558.960Ornithorhynchus_anatinus
ENSLAFG00000023358UPF3A10054.756ENSOCUG00000008450UPF3A8354.503Oryctolagus_cuniculus
ENSLAFG00000023358UPF3A9942.032ENSOCUG00000010213UPF3B8543.269Oryctolagus_cuniculus
ENSLAFG00000023358UPF3A9439.120ENSORLG00000001026upf3b8740.342Oryzias_latipes
ENSLAFG00000023358UPF3A9748.706ENSORLG00000010911upf3a8548.706Oryzias_latipes
ENSLAFG00000023358UPF3A9748.219ENSORLG00020014317upf3a8548.219Oryzias_latipes_hni
ENSLAFG00000023358UPF3A9439.120ENSORLG00020003758upf3b8740.342Oryzias_latipes_hni
ENSLAFG00000023358UPF3A9438.389ENSORLG00015012954upf3b8740.342Oryzias_latipes_hsok
ENSLAFG00000023358UPF3A8363.506ENSOGAG00000004788UPF3A8064.080Otolemur_garnettii
ENSLAFG00000023358UPF3A9943.468ENSOGAG00000004643-8943.972Otolemur_garnettii
ENSLAFG00000023358UPF3A9643.980ENSOGAG00000033003-8944.471Otolemur_garnettii
ENSLAFG00000023358UPF3A9942.202ENSOARG00000016051-8942.563Ovis_aries
ENSLAFG00000023358UPF3A9959.859ENSOARG00000009004UPF3A8559.859Ovis_aries
ENSLAFG00000023358UPF3A9938.389ENSOARG00000007869-9839.394Ovis_aries
ENSLAFG00000023358UPF3A9959.310ENSPPAG00000042267UPF3A8659.310Pan_paniscus
ENSLAFG00000023358UPF3A9943.468ENSPPAG00000040390UPF3B8356.731Pan_paniscus
ENSLAFG00000023358UPF3A9859.624ENSPPRG00000025062UPF3A8660.325Panthera_pardus
ENSLAFG00000023358UPF3A9943.499ENSPPRG00000023536UPF3B8545.050Panthera_pardus
ENSLAFG00000023358UPF3A9942.593ENSPTIG00000015264UPF3B8356.731Panthera_tigris_altaica
ENSLAFG00000023358UPF3A9943.468ENSPTRG00000022228UPF3B8356.731Pan_troglodytes
ENSLAFG00000023358UPF3A9951.826ENSPTRG00000041187-9152.982Pan_troglodytes
ENSLAFG00000023358UPF3A9959.447ENSPTRG00000006073UPF3A8659.447Pan_troglodytes
ENSLAFG00000023358UPF3A9951.954ENSPTRG00000041835-9251.606Pan_troglodytes
ENSLAFG00000023358UPF3A9948.966ENSPTRG00000051640-9249.195Pan_troglodytes
ENSLAFG00000023358UPF3A9943.230ENSPANG00000000900UPF3B7367.089Papio_anubis
ENSLAFG00000023358UPF3A9959.259ENSPANG00000004346UPF3A8559.259Papio_anubis
ENSLAFG00000023358UPF3A9740.046ENSPKIG00000019226upf3b6772.115Paramormyrops_kingsleyae
ENSLAFG00000023358UPF3A9962.441ENSPSIG00000007468UPF3A9962.441Pelodiscus_sinensis
ENSLAFG00000023358UPF3A9944.444ENSPEMG00000012352Upf3b8944.444Peromyscus_maniculatus_bairdii
ENSLAFG00000023358UPF3A8458.475ENSPEMG00000019968-7759.053Peromyscus_maniculatus_bairdii
ENSLAFG00000023358UPF3A6891.875ENSPCIG00000019590-7291.875Phascolarctos_cinereus
ENSLAFG00000023358UPF3A9744.526ENSPCIG00000028914UPF3B8545.012Phascolarctos_cinereus
ENSLAFG00000023358UPF3A6380.000ENSPLAG00000011960upf3a6480.000Poecilia_latipinna
ENSLAFG00000023358UPF3A6380.000ENSPMEG00000000836upf3a6480.000Poecilia_mexicana
ENSLAFG00000023358UPF3A5167.516ENSPPYG00000020675-7252.321Pongo_abelii
ENSLAFG00000023358UPF3A9959.770ENSPPYG00000005536UPF3A8659.770Pongo_abelii
ENSLAFG00000023358UPF3A6563.235ENSPCAG00000013124UPF3A5662.590Procavia_capensis
ENSLAFG00000023358UPF3A9744.000ENSPCAG00000009464UPF3B8644.366Procavia_capensis
ENSLAFG00000023358UPF3A9943.794ENSPCOG00000021960UPF3B8944.550Propithecus_coquereli
ENSLAFG00000023358UPF3A10058.411ENSPVAG00000005656UPF3A8358.065Pteropus_vampyrus
ENSLAFG00000023358UPF3A9836.534ENSPVAG00000014075UPF3B8537.019Pteropus_vampyrus
ENSLAFG00000023358UPF3A9549.754ENSPNAG00000019532upf3a8350.985Pygocentrus_nattereri
ENSLAFG00000023358UPF3A9742.654ENSPNAG00000021528upf3b8943.914Pygocentrus_nattereri
ENSLAFG00000023358UPF3A8360.231ENSRNOG00000017397Upf3a7960.227Rattus_norvegicus
ENSLAFG00000023358UPF3A9943.705ENSRNOG00000039994Upf3b8944.418Rattus_norvegicus
ENSLAFG00000023358UPF3A9141.039ENSRBIG00000037219UPF3B9942.078Rhinopithecus_bieti
ENSLAFG00000023358UPF3A9958.756ENSRBIG00000034007UPF3A9158.701Rhinopithecus_bieti
ENSLAFG00000023358UPF3A9958.986ENSRROG00000012212UPF3A8558.986Rhinopithecus_roxellana
ENSLAFG00000023358UPF3A9943.468ENSRROG00000041031UPF3B7367.089Rhinopithecus_roxellana
ENSLAFG00000023358UPF3A9257.250ENSSBOG00000029989UPF3A8557.250Saimiri_boliviensis_boliviensis
ENSLAFG00000023358UPF3A9944.181ENSSBOG00000019740UPF3B7467.949Saimiri_boliviensis_boliviensis
ENSLAFG00000023358UPF3A9745.985ENSSHAG00000008634UPF3B8545.985Sarcophilus_harrisii
ENSLAFG00000023358UPF3A9966.824ENSSHAG00000009895UPF3A9866.824Sarcophilus_harrisii
ENSLAFG00000023358UPF3A5854.733ENSSFOG00015005614upf3b9042.105Scleropages_formosus
ENSLAFG00000023358UPF3A5751.969ENSSMAG00000012913upf3b9041.629Scophthalmus_maximus
ENSLAFG00000023358UPF3A9549.389ENSSDUG00000009680upf3a5379.070Seriola_dumerili
ENSLAFG00000023358UPF3A9451.372ENSSARG00000007262UPF3A9452.709Sorex_araneus
ENSLAFG00000023358UPF3A9941.176ENSSPUG00000013082UPF3B8742.032Sphenodon_punctatus
ENSLAFG00000023358UPF3A5553.586ENSSPAG00000009989upf3b8943.029Stegastes_partitus
ENSLAFG00000023358UPF3A9943.230ENSSSCG00000012617UPF3B8544.554Sus_scrofa
ENSLAFG00000023358UPF3A10060.656ENSSSCG00000024679UPF3A8160.422Sus_scrofa
ENSLAFG00000023358UPF3A9364.899ENSTGUG00000009493UPF3A9764.899Taeniopygia_guttata
ENSLAFG00000023358UPF3A10044.419ENSTGUG00000003413UPF3B9844.419Taeniopygia_guttata
ENSLAFG00000023358UPF3A9546.731ENSTRUG00000012730upf3a8347.433Takifugu_rubripes
ENSLAFG00000023358UPF3A9350.000ENSTNIG00000014973upf3a9650.250Tetraodon_nigroviridis
ENSLAFG00000023358UPF3A5551.592ENSTBEG00000003229UPF3B8935.253Tupaia_belangeri
ENSLAFG00000023358UPF3A7550.318ENSTBEG00000017186-9450.784Tupaia_belangeri
ENSLAFG00000023358UPF3A9158.205ENSTTRG00000015414UPF3A7559.788Tursiops_truncatus
ENSLAFG00000023358UPF3A9942.280ENSUAMG00000024565UPF3B7767.742Ursus_americanus
ENSLAFG00000023358UPF3A9941.509ENSUMAG00000002150UPF3B9041.745Ursus_maritimus
ENSLAFG00000023358UPF3A9440.389ENSVPAG00000009971UPF3B9940.777Vicugna_pacos
ENSLAFG00000023358UPF3A9364.213ENSVPAG00000003525UPF3A9563.054Vicugna_pacos
ENSLAFG00000023358UPF3A9958.548ENSVVUG00000013538UPF3A8158.796Vulpes_vulpes
ENSLAFG00000023358UPF3A9941.330ENSVVUG00000011594UPF3B7872.727Vulpes_vulpes
ENSLAFG00000023358UPF3A9357.895ENSXETG00000002572upf3a8858.145Xenopus_tropicalis
ENSLAFG00000023358UPF3A9742.032ENSXETG00000007440upf3b6869.427Xenopus_tropicalis
ENSLAFG00000023358UPF3A6379.021ENSXCOG00000018591upf3a8243.765Xiphophorus_couchianus
ENSLAFG00000023358UPF3A6579.021ENSXMAG00000013452upf3a6579.021Xiphophorus_maculatus

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