EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000027404 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 12593 bases
Position: chrscaffold_73:6452120-6464712
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000026875	APOBEC_N	PF08210.11	5.5e-85	1	2
ENSLAFP00000026875	APOBEC_N	PF08210.11	5.5e-85	2	2
ENSLAFP00000026875	APOBEC_C	PF05240.14	1.1e-61	1	2
ENSLAFP00000026875	APOBEC_C	PF05240.14	1.1e-61	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000036674	-	1104	-	ENSLAFP00000026875	368 (aa)	-	G3UGB7

Gene Model

Click here to download ENSLAFG00000027404's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000027404's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000027404	-	99	34.109	ENSLAFG00000020906	-	92	34.232
ENSLAFG00000027404	-	92	40.351	ENSLAFG00000000721	AICDA	90	40.351
ENSLAFG00000027404	-	87	43.931	ENSLAFG00000008890	-	86	43.931
ENSLAFG00000027404	-	62	34.694	ENSLAFG00000030837	APOBEC1	57	34.694
ENSLAFG00000027404	-	96	39.344	ENSLAFG00000005275	-	99	39.344
ENSLAFG00000027404	-	87	33.526	ENSLAFG00000016563	APOBEC2	77	33.918

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000027404	-	95	51.124	ENSG00000100298	APOBEC3H	100	51.124	Homo_sapiens
ENSLAFG00000027404	-	100	38.756	ENSAMEG00000010818	-	96	38.756	Ailuropoda_melanoleuca
ENSLAFG00000027404	-	98	50.802	ENSANAG00000025410	APOBEC3H	92	50.802	Aotus_nancymaae
ENSLAFG00000027404	-	97	51.667	ENSBTAG00000007755	APOBEC3H	95	47.645	Bos_taurus
ENSLAFG00000027404	-	92	48.876	ENSCJAG00000012524	APOBEC3H	91	50.000	Callithrix_jacchus
ENSLAFG00000027404	-	95	49.714	ENSCAFG00000001361	APOBEC3Z3	93	49.714	Canis_familiaris
ENSLAFG00000027404	-	96	49.133	ENSCAFG00020002584	-	96	49.133	Canis_lupus_dingo
ENSLAFG00000027404	-	97	51.111	ENSCHIG00000026580	-	96	48.603	Capra_hircus
ENSLAFG00000027404	-	93	54.386	ENSTSYG00000032894	-	100	54.386	Carlito_syrichta
ENSLAFG00000027404	-	98	46.575	ENSCPOG00000009257	-	87	46.575	Cavia_porcellus
ENSLAFG00000027404	-	96	48.352	ENSCCAG00000008525	APOBEC3H	95	48.901	Cebus_capucinus
ENSLAFG00000027404	-	94	51.685	ENSCATG00000030302	APOBEC3H	99	51.685	Cercocebus_atys
ENSLAFG00000027404	-	94	53.977	ENSCLAG00000016615	-	88	53.977	Chinchilla_lanigera
ENSLAFG00000027404	-	96	53.371	ENSCSAG00000006371	APOBEC3H	94	53.371	Chlorocebus_sabaeus
ENSLAFG00000027404	-	98	44.624	ENSCGRG00001022976	Apobec3	89	44.624	Cricetulus_griseus_chok1gshd
ENSLAFG00000027404	-	98	44.624	ENSCGRG00000005621	Apobec3	89	44.624	Cricetulus_griseus_crigri
ENSLAFG00000027404	-	94	46.499	ENSDORG00000027271	-	100	43.299	Dipodomys_ordii
ENSLAFG00000027404	-	96	51.667	ENSECAG00000007726	APOBEC3H	80	51.667	Equus_caballus
ENSLAFG00000027404	-	94	52.299	ENSFCAG00000005251	APOBEC3Z3	92	52.299	Felis_catus
ENSLAFG00000027404	-	95	46.023	ENSSTOG00000007125	-	86	46.023	Ictidomys_tridecemlineatus
ENSLAFG00000027404	-	97	43.925	ENSJJAG00000016840	-	85	43.925	Jaculus_jaculus
ENSLAFG00000027404	-	96	52.247	ENSMFAG00000031827	APOBEC3H	94	52.247	Macaca_fascicularis
ENSLAFG00000027404	-	96	51.685	ENSMMUG00000001016	APOBEC3H	94	51.685	Macaca_mulatta
ENSLAFG00000027404	-	96	51.685	ENSMNEG00000039259	APOBEC3H	94	51.685	Macaca_nemestrina
ENSLAFG00000027404	-	96	52.247	ENSMLEG00000033417	APOBEC3H	94	52.247	Mandrillus_leucophaeus
ENSLAFG00000027404	-	98	44.355	ENSMAUG00000011683	Apobec3	91	44.355	Mesocricetus_auratus
ENSLAFG00000027404	-	99	40.000	ENSMOCG00000021576	Apobec3	97	40.253	Microtus_ochrogaster
ENSLAFG00000027404	-	96	42.663	MGP_CAROLIEiJ_G0020029	Apobec3	98	43.373	Mus_caroli
ENSLAFG00000027404	-	96	42.663	ENSMUSG00000009585	Apobec3	96	47.917	Mus_musculus
ENSLAFG00000027404	-	99	43.864	MGP_PahariEiJ_G0020031	-	95	43.864	Mus_pahari
ENSLAFG00000027404	-	99	42.632	MGP_SPRETEiJ_G0020927	Apobec3	98	44.578	Mus_spretus
ENSLAFG00000027404	-	97	42.541	ENSMPUG00000013239	-	96	42.541	Mustela_putorius_furo
ENSLAFG00000027404	-	99	43.666	ENSNGAG00000018998	Apobec3	94	43.666	Nannospalax_galili
ENSLAFG00000027404	-	95	48.315	ENSNLEG00000015218	-	87	48.315	Nomascus_leucogenys
ENSLAFG00000027404	-	96	42.541	ENSOCUG00000023913	-	89	42.541	Oryctolagus_cuniculus
ENSLAFG00000027404	-	96	49.162	ENSOARG00000016290	APOBEC3F	97	49.162	Ovis_aries
ENSLAFG00000027404	-	95	50.562	ENSPPAG00000036522	APOBEC3H	100	50.562	Pan_paniscus
ENSLAFG00000027404	-	94	52.571	ENSPPRG00000003941	-	92	52.571	Panthera_pardus
ENSLAFG00000027404	-	97	43.243	ENSPPRG00000003675	-	96	43.243	Panthera_pardus
ENSLAFG00000027404	-	94	52.571	ENSPTIG00000010283	-	92	52.571	Panthera_tigris_altaica
ENSLAFG00000027404	-	95	50.562	ENSPTRG00000014390	APOBEC3H	100	50.562	Pan_troglodytes
ENSLAFG00000027404	-	96	51.685	ENSPANG00000010774	APOBEC3H	94	51.685	Papio_anubis
ENSLAFG00000027404	-	95	40.415	ENSPEMG00000000456	Apobec3	88	40.415	Peromyscus_maniculatus_bairdii
ENSLAFG00000027404	-	96	51.124	ENSPPYG00000011834	-	94	51.124	Pongo_abelii
ENSLAFG00000027404	-	93	55.429	ENSPCAG00000015655	-	99	55.429	Procavia_capensis
ENSLAFG00000027404	-	68	43.651	ENSPVAG00000024161	-	97	43.651	Pteropus_vampyrus
ENSLAFG00000027404	-	95	51.136	ENSPVAG00000009462	-	100	51.136	Pteropus_vampyrus
ENSLAFG00000027404	-	68	45.238	ENSPVAG00000024267	-	97	45.238	Pteropus_vampyrus
ENSLAFG00000027404	-	98	44.236	ENSRNOG00000016852	Apobec3	93	44.236	Rattus_norvegicus
ENSLAFG00000027404	-	96	51.685	ENSRBIG00000029088	APOBEC3H	94	51.685	Rhinopithecus_bieti
ENSLAFG00000027404	-	96	51.685	ENSRROG00000024699	APOBEC3H	94	51.685	Rhinopithecus_roxellana
ENSLAFG00000027404	-	95	48.619	ENSSBOG00000030005	APOBEC3H	99	48.905	Saimiri_boliviensis_boliviensis
ENSLAFG00000027404	-	97	51.667	ENSSSCG00000000091	APOBEC3B	85	49.721	Sus_scrofa
ENSLAFG00000027404	-	89	48.193	ENSTBEG00000001532	-	99	48.193	Tupaia_belangeri
ENSLAFG00000027404	-	95	52.841	ENSTTRG00000001266	-	99	52.841	Tursiops_truncatus
ENSLAFG00000027404	-	97	45.263	ENSUAMG00000004427	-	86	45.263	Ursus_americanus
ENSLAFG00000027404	-	96	48.000	ENSUMAG00000014435	-	95	48.000	Ursus_maritimus
ENSLAFG00000027404	-	61	51.613	ENSVPAG00000011108	-	98	51.613	Vicugna_pacos
ENSLAFG00000027404	-	83	58.974	ENSVVUG00000014624	-	58	58.974	Vulpes_vulpes