EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000028147 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: LARK|RBM4A|ZCCHC21|ZCRB3A
Full Name: -
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Minus strand
Length: 4228 bases
Position: chrscaffold_71:2893975-2898202
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000026571	zf-CCHC	PF00098.23	1.3e-07	1	1
ENSLAFP00000019553	zf-CCHC	PF00098.23	1.5e-07	1	1
ENSLAFP00000026571	RRM_5	PF13893.6	1.8e-08	1	2
ENSLAFP00000026571	RRM_5	PF13893.6	1.8e-08	2	2
ENSLAFP00000019553	RRM_5	PF13893.6	2.2e-08	1	2
ENSLAFP00000019553	RRM_5	PF13893.6	2.2e-08	2	2
ENSLAFP00000026571	RRM_1	PF00076.22	5.9e-35	1	2
ENSLAFP00000026571	RRM_1	PF00076.22	5.9e-35	2	2
ENSLAFP00000019553	RRM_1	PF00076.22	6.8e-35	1	2
ENSLAFP00000019553	RRM_1	PF00076.22	6.8e-35	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000035366	-	1032	-	ENSLAFP00000026571	343 (aa)	-	G3UFG3
ENSLAFT00000033336	-	1095	-	ENSLAFP00000019553	365 (aa)	-	G3TVE5

Gene Model

Click here to download ENSLAFG00000028147's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000028147's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000028147	-	100	83.562	ENSLAFG00000002285	RBM4B	100	84.110

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000028147	-	100	94.795	ENSG00000173933	RBM4	97	98.551	Homo_sapiens
ENSLAFG00000028147	-	99	70.492	ENSG00000248643	RBM14-RBM4	100	71.038	Homo_sapiens
ENSLAFG00000028147	-	100	87.397	ENSG00000173914	RBM4B	97	99.281	Homo_sapiens
ENSLAFG00000028147	-	100	96.164	ENSAMEG00000010914	RBM4	100	96.164	Ailuropoda_melanoleuca
ENSLAFG00000028147	-	100	87.945	ENSAMEG00000010906	RBM4B	100	87.123	Ailuropoda_melanoleuca
ENSLAFG00000028147	-	100	87.123	ENSANAG00000023478	RBM4B	97	99.281	Aotus_nancymaae
ENSLAFG00000028147	-	100	88.219	ENSBTAG00000000423	RBM4B	100	87.397	Bos_taurus
ENSLAFG00000028147	-	100	93.699	ENSBTAG00000031688	RBM4	100	94.247	Bos_taurus
ENSLAFG00000028147	-	100	87.123	ENSCJAG00000013666	RBM4B	97	99.281	Callithrix_jacchus
ENSLAFG00000028147	-	100	96.164	ENSCAFG00000012388	RBM4	100	96.164	Canis_familiaris
ENSLAFG00000028147	-	100	87.945	ENSCAFG00000012378	RBM4B	100	87.123	Canis_familiaris
ENSLAFG00000028147	-	100	96.164	ENSCAFG00020015515	RBM4	100	96.164	Canis_lupus_dingo
ENSLAFG00000028147	-	100	87.945	ENSCAFG00020015519	RBM4B	100	87.123	Canis_lupus_dingo
ENSLAFG00000028147	-	100	93.699	ENSCHIG00000020613	RBM4	100	94.247	Capra_hircus
ENSLAFG00000028147	-	100	88.219	ENSCHIG00000008907	RBM4B	100	87.397	Capra_hircus
ENSLAFG00000028147	-	66	78.008	ENSTSYG00000009580	RBM4B	96	76.763	Carlito_syrichta
ENSLAFG00000028147	-	100	87.397	ENSCAPG00000009570	RBM4B	100	84.932	Cavia_aperea
ENSLAFG00000028147	-	100	95.890	ENSCAPG00000016600	RBM4	97	99.275	Cavia_aperea
ENSLAFG00000028147	-	100	87.397	ENSCPOG00000013689	RBM4B	100	84.932	Cavia_porcellus
ENSLAFG00000028147	-	100	95.890	ENSCPOG00000013194	RBM4	97	99.275	Cavia_porcellus
ENSLAFG00000028147	-	58	72.637	ENSCCAG00000023319	-	100	72.637	Cebus_capucinus
ENSLAFG00000028147	-	100	87.397	ENSCCAG00000016501	RBM4B	97	99.281	Cebus_capucinus
ENSLAFG00000028147	-	100	87.397	ENSCATG00000035353	RBM4B	97	99.281	Cercocebus_atys
ENSLAFG00000028147	-	100	95.616	ENSCLAG00000014756	RBM4	97	99.275	Chinchilla_lanigera
ENSLAFG00000028147	-	100	87.397	ENSCLAG00000015287	RBM4B	100	86.575	Chinchilla_lanigera
ENSLAFG00000028147	-	100	87.397	ENSCSAG00000008361	RBM4B	100	86.575	Chlorocebus_sabaeus
ENSLAFG00000028147	-	100	88.493	ENSCHOG00000002892	RBM4B	100	87.671	Choloepus_hoffmanni
ENSLAFG00000028147	-	62	94.273	ENSCHOG00000009753	RBM14-RBM4	100	94.273	Choloepus_hoffmanni
ENSLAFG00000028147	-	100	74.935	ENSCPBG00000023800	-	100	73.810	Chrysemys_picta_bellii
ENSLAFG00000028147	-	100	87.397	ENSCANG00000021868	RBM4B	97	99.281	Colobus_angolensis_palliatus
ENSLAFG00000028147	-	100	84.637	ENSCGRG00001024693	Rbm4b	100	84.958	Cricetulus_griseus_chok1gshd
ENSLAFG00000028147	-	100	92.329	ENSCGRG00001016609	-	97	100.000	Cricetulus_griseus_chok1gshd
ENSLAFG00000028147	-	100	92.329	ENSCGRG00000010183	-	97	100.000	Cricetulus_griseus_crigri
ENSLAFG00000028147	-	100	84.637	ENSCGRG00000012112	Rbm4b	100	84.958	Cricetulus_griseus_crigri
ENSLAFG00000028147	-	100	95.616	ENSDNOG00000032390	RBM4	100	95.616	Dasypus_novemcinctus
ENSLAFG00000028147	-	100	87.123	ENSDNOG00000045639	-	100	86.301	Dasypus_novemcinctus
ENSLAFG00000028147	-	100	87.945	ENSDNOG00000019500	-	100	87.123	Dasypus_novemcinctus
ENSLAFG00000028147	-	100	92.603	ENSDORG00000004538	-	97	97.826	Dipodomys_ordii
ENSLAFG00000028147	-	100	85.434	ENSDORG00000029108	Rbm4b	100	85.475	Dipodomys_ordii
ENSLAFG00000028147	-	62	63.436	ENSETEG00000018142	-	100	63.436	Echinops_telfairi
ENSLAFG00000028147	-	100	87.671	ENSEASG00005005068	RBM4B	100	86.849	Equus_asinus_asinus
ENSLAFG00000028147	-	100	94.521	ENSEASG00005005064	RBM4	100	94.247	Equus_asinus_asinus
ENSLAFG00000028147	-	100	94.521	ENSECAG00000022940	RBM4	100	94.247	Equus_caballus
ENSLAFG00000028147	-	100	87.397	ENSECAG00000022987	RBM4B	100	86.575	Equus_caballus
ENSLAFG00000028147	-	100	86.612	ENSEEUG00000000058	RBM4B	100	85.753	Erinaceus_europaeus
ENSLAFG00000028147	-	100	96.164	ENSFCAG00000029651	RBM4	100	96.164	Felis_catus
ENSLAFG00000028147	-	100	86.849	ENSFCAG00000007394	RBM4B	97	99.281	Felis_catus
ENSLAFG00000028147	-	89	82.463	ENSFALG00000002073	-	100	67.575	Ficedula_albicollis
ENSLAFG00000028147	-	50	92.063	ENSFDAG00000013661	-	93	92.063	Fukomys_damarensis
ENSLAFG00000028147	-	100	95.616	ENSFDAG00000005447	RBM4	97	99.275	Fukomys_damarensis
ENSLAFG00000028147	-	100	87.397	ENSFDAG00000015530	RBM4B	100	86.575	Fukomys_damarensis
ENSLAFG00000028147	-	100	76.393	ENSGALG00000037946	-	100	75.538	Gallus_gallus
ENSLAFG00000028147	-	100	74.674	ENSGAGG00000008553	-	100	74.074	Gopherus_agassizii
ENSLAFG00000028147	-	100	87.397	ENSGGOG00000011698	RBM4B	97	99.281	Gorilla_gorilla
ENSLAFG00000028147	-	79	55.060	ENSHGLG00000000117	-	95	64.932	Heterocephalus_glaber_female
ENSLAFG00000028147	-	100	87.671	ENSHGLG00000016412	-	100	86.849	Heterocephalus_glaber_female
ENSLAFG00000028147	-	100	74.785	ENSHGLG00000002853	-	100	74.929	Heterocephalus_glaber_female
ENSLAFG00000028147	-	100	95.616	ENSHGLG00000009991	RBM4	97	99.275	Heterocephalus_glaber_female
ENSLAFG00000028147	-	100	84.110	ENSHGLG00100003854	RBM4	97	99.275	Heterocephalus_glaber_male
ENSLAFG00000028147	-	95	75.976	ENSHGLG00100020033	-	100	76.119	Heterocephalus_glaber_male
ENSLAFG00000028147	-	100	86.885	ENSHGLG00100003978	-	100	86.111	Heterocephalus_glaber_male
ENSLAFG00000028147	-	100	95.890	ENSSTOG00000022811	RBM4	100	95.890	Ictidomys_tridecemlineatus
ENSLAFG00000028147	-	100	87.397	ENSSTOG00000011226	RBM4B	100	86.849	Ictidomys_tridecemlineatus
ENSLAFG00000028147	-	100	83.288	ENSJJAG00000020870	Rbm4b	100	82.740	Jaculus_jaculus
ENSLAFG00000028147	-	100	87.397	ENSMFAG00000033927	RBM4B	97	100.000	Macaca_fascicularis
ENSLAFG00000028147	-	100	87.397	ENSMNEG00000043371	RBM4B	97	99.281	Macaca_nemestrina
ENSLAFG00000028147	-	100	87.397	ENSMLEG00000028563	RBM4B	97	100.000	Mandrillus_leucophaeus
ENSLAFG00000028147	-	100	84.034	ENSMAUG00000017027	Rbm4b	100	84.637	Mesocricetus_auratus
ENSLAFG00000028147	-	100	87.671	ENSMICG00000003820	RBM4B	97	99.281	Microcebus_murinus
ENSLAFG00000028147	-	100	83.799	ENSMOCG00000001835	Rbm4b	100	84.401	Microtus_ochrogaster
ENSLAFG00000028147	-	100	89.402	ENSMODG00000008056	-	100	89.130	Monodelphis_domestica
ENSLAFG00000028147	-	100	90.164	MGP_CAROLIEiJ_G0022516	-	97	100.000	Mus_caroli
ENSLAFG00000028147	-	100	84.637	MGP_CAROLIEiJ_G0022515	Rbm4b	100	84.958	Mus_caroli
ENSLAFG00000028147	-	99	65.395	MGP_CAROLIEiJ_G0022514	-	100	66.213	Mus_caroli
ENSLAFG00000028147	-	100	90.164	ENSMUSG00000096370	Gm21992	100	90.984	Mus_musculus
ENSLAFG00000028147	-	100	84.358	ENSMUSG00000033760	Rbm4b	91	99.281	Mus_musculus
ENSLAFG00000028147	-	100	90.164	ENSMUSG00000094936	Rbm4	100	100.000	Mus_musculus
ENSLAFG00000028147	-	100	90.437	MGP_PahariEiJ_G0014011	-	100	90.984	Mus_pahari
ENSLAFG00000028147	-	100	84.110	MGP_PahariEiJ_G0014012	Rbm4b	100	84.658	Mus_pahari
ENSLAFG00000028147	-	100	90.437	MGP_PahariEiJ_G0014013	-	97	100.000	Mus_pahari
ENSLAFG00000028147	-	100	72.866	MGP_SPRETEiJ_G0023428	-	94	73.780	Mus_spretus
ENSLAFG00000028147	-	100	72.598	MGP_SPRETEiJ_G0023429	-	100	73.264	Mus_spretus
ENSLAFG00000028147	-	100	72.866	MGP_SPRETEiJ_G0023430	-	100	73.780	Mus_spretus
ENSLAFG00000028147	-	100	88.219	ENSMPUG00000003450	RBM4B	100	87.397	Mustela_putorius_furo
ENSLAFG00000028147	-	100	95.890	ENSMPUG00000003443	RBM4	100	95.890	Mustela_putorius_furo
ENSLAFG00000028147	-	100	87.749	ENSMLUG00000001290	RBM4B	100	87.784	Myotis_lucifugus
ENSLAFG00000028147	-	99	93.664	ENSMLUG00000004076	RBM4	95	94.215	Myotis_lucifugus
ENSLAFG00000028147	-	100	85.794	ENSNGAG00000016292	Rbm4b	100	85.237	Nannospalax_galili
ENSLAFG00000028147	-	100	86.575	ENSNLEG00000006213	RBM4B	97	99.281	Nomascus_leucogenys
ENSLAFG00000028147	-	100	94.795	ENSNLEG00000035021	RBM4	97	98.551	Nomascus_leucogenys
ENSLAFG00000028147	-	62	82.819	ENSMEUG00000005739	-	100	82.819	Notamacropus_eugenii
ENSLAFG00000028147	-	100	88.219	ENSMEUG00000001445	-	100	87.671	Notamacropus_eugenii
ENSLAFG00000028147	-	100	94.795	ENSOPRG00000009149	RBM4	100	94.795	Ochotona_princeps
ENSLAFG00000028147	-	100	87.671	ENSOPRG00000009158	RBM4B	100	87.397	Ochotona_princeps
ENSLAFG00000028147	-	100	76.986	ENSODEG00000001866	-	100	77.534	Octodon_degus
ENSLAFG00000028147	-	100	87.123	ENSODEG00000017696	-	100	86.301	Octodon_degus
ENSLAFG00000028147	-	100	88.150	ENSOANG00000011036	-	100	88.150	Ornithorhynchus_anatinus
ENSLAFG00000028147	-	100	82.267	ENSOANG00000003143	-	84	81.395	Ornithorhynchus_anatinus
ENSLAFG00000028147	-	100	95.942	ENSOCUG00000004731	RBM4	100	95.942	Oryctolagus_cuniculus
ENSLAFG00000028147	-	100	87.671	ENSOCUG00000006695	LARK	100	86.849	Oryctolagus_cuniculus
ENSLAFG00000028147	-	100	95.342	ENSOGAG00000015647	RBM4	100	95.342	Otolemur_garnettii
ENSLAFG00000028147	-	100	87.671	ENSOGAG00000015648	RBM4B	100	86.849	Otolemur_garnettii
ENSLAFG00000028147	-	100	91.233	ENSOARG00000007700	RBM4	100	91.781	Ovis_aries
ENSLAFG00000028147	-	100	87.945	ENSOARG00000007759	RBM4B	100	87.671	Ovis_aries
ENSLAFG00000028147	-	100	87.397	ENSPPAG00000015125	RBM4B	97	99.281	Pan_paniscus
ENSLAFG00000028147	-	100	96.164	ENSPPRG00000003533	RBM4	100	96.164	Panthera_pardus
ENSLAFG00000028147	-	100	86.849	ENSPPRG00000003388	RBM4B	97	99.281	Panthera_pardus
ENSLAFG00000028147	-	100	84.469	ENSPTIG00000016180	RBM4	97	99.275	Panthera_tigris_altaica
ENSLAFG00000028147	-	100	86.849	ENSPTIG00000015426	RBM4B	97	99.281	Panthera_tigris_altaica
ENSLAFG00000028147	-	100	87.397	ENSPTRG00000003935	RBM4B	97	99.281	Pan_troglodytes
ENSLAFG00000028147	-	100	87.397	ENSPANG00000020672	RBM4B	97	99.281	Papio_anubis
ENSLAFG00000028147	-	100	75.066	ENSPSIG00000003430	-	100	73.925	Pelodiscus_sinensis
ENSLAFG00000028147	-	80	78.472	ENSPSIG00000003477	-	95	77.431	Pelodiscus_sinensis
ENSLAFG00000028147	-	100	84.658	ENSPEMG00000009144	Rbm4b	100	84.932	Peromyscus_maniculatus_bairdii
ENSLAFG00000028147	-	100	93.699	ENSPPYG00000003012	RBM4	100	94.247	Pongo_abelii
ENSLAFG00000028147	-	100	87.397	ENSPPYG00000003010	RBM4B	100	86.575	Pongo_abelii
ENSLAFG00000028147	-	100	97.808	ENSPCAG00000003393	-	100	97.808	Procavia_capensis
ENSLAFG00000028147	-	100	87.671	ENSPCOG00000027885	RBM4B	97	99.281	Propithecus_coquereli
ENSLAFG00000028147	-	100	88.219	ENSPVAG00000010487	RBM4B	100	87.397	Pteropus_vampyrus
ENSLAFG00000028147	-	100	96.164	ENSPVAG00000010486	RBM4	100	96.164	Pteropus_vampyrus
ENSLAFG00000028147	-	100	92.350	ENSRNOG00000050741	Rbm4	97	100.000	Rattus_norvegicus
ENSLAFG00000028147	-	100	84.916	ENSRNOG00000061795	Rbm4b	100	85.237	Rattus_norvegicus
ENSLAFG00000028147	-	100	87.397	ENSRBIG00000019394	RBM4B	97	99.281	Rhinopithecus_bieti
ENSLAFG00000028147	-	100	87.397	ENSRROG00000032850	RBM4B	97	99.281	Rhinopithecus_roxellana
ENSLAFG00000028147	-	100	86.849	ENSSBOG00000034474	RBM4B	97	98.561	Saimiri_boliviensis_boliviensis
ENSLAFG00000028147	-	100	89.625	ENSSHAG00000008386	-	100	89.655	Sarcophilus_harrisii
ENSLAFG00000028147	-	100	87.671	ENSSARG00000010710	RBM4B	100	86.849	Sorex_araneus
ENSLAFG00000028147	-	100	96.164	ENSSSCG00000032437	RBM4	100	96.164	Sus_scrofa
ENSLAFG00000028147	-	81	78.276	ENSTGUG00000016779	-	94	77.083	Taeniopygia_guttata
ENSLAFG00000028147	-	100	85.753	ENSTBEG00000003748	RBM4B	100	85.515	Tupaia_belangeri
ENSLAFG00000028147	-	67	98.174	ENSTBEG00000003727	-	70	98.182	Tupaia_belangeri
ENSLAFG00000028147	-	100	87.671	ENSTTRG00000011166	RBM4B	100	86.849	Tursiops_truncatus
ENSLAFG00000028147	-	100	95.342	ENSTTRG00000011164	RBM4	100	95.342	Tursiops_truncatus
ENSLAFG00000028147	-	100	88.219	ENSUAMG00000004745	RBM4B	100	87.397	Ursus_americanus
ENSLAFG00000028147	-	100	96.164	ENSUAMG00000014882	RBM4	100	96.164	Ursus_americanus
ENSLAFG00000028147	-	69	98.298	ENSUMAG00000011738	-	97	99.275	Ursus_maritimus
ENSLAFG00000028147	-	100	87.671	ENSVPAG00000001950	RBM4B	100	86.849	Vicugna_pacos
ENSLAFG00000028147	-	100	93.973	ENSVPAG00000001949	RBM4	100	93.151	Vicugna_pacos
ENSLAFG00000028147	-	100	87.945	ENSVVUG00000010619	RBM4B	100	87.123	Vulpes_vulpes
ENSLAFG00000028147	-	100	95.616	ENSVVUG00000010622	RBM4	100	95.616	Vulpes_vulpes