EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000029302 (Gene tree)
Gene ID: -
Gene Symbol: LSM7
Alias: YNL147W
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 5940 bases
Position: chrscaffold_132:580217-586156
Accession: 20470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000027129	LSM	PF01423.22	3.4e-21	1	1
ENSLAFP00000019247	LSM	PF01423.22	6.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000036764	LSM7-202	312	-	ENSLAFP00000027129	103 (aa)	-	G3UH21
ENSLAFT00000036245	LSM7-201	387	-	ENSLAFP00000019247	128 (aa)	-	G3TUI9

Gene Model

Click here to download ENSLAFG00000029302's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000029302's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000029302	LSM7	69	36.620	ENSLAFG00000002301	SNRPG	83	36.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000029302	LSM7	98	100.000	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSLAFG00000029302	LSM7	92	94.737	ENSAPOG00000015573	lsm7	82	94.737	Acanthochromis_polyacanthus
ENSLAFG00000029302	LSM7	99	99.020	ENSAMEG00000005484	LSM7	99	99.020	Ailuropoda_melanoleuca
ENSLAFG00000029302	LSM7	94	94.845	ENSACIG00000006498	lsm7	77	94.845	Amphilophus_citrinellus
ENSLAFG00000029302	LSM7	99	94.118	ENSAOCG00000001077	lsm7	93	94.118	Amphiprion_ocellaris
ENSLAFG00000029302	LSM7	98	95.050	ENSAPEG00000000694	lsm7	98	95.050	Amphiprion_percula
ENSLAFG00000029302	LSM7	99	95.098	ENSAPEG00000024447	lsm7	93	94.118	Amphiprion_percula
ENSLAFG00000029302	LSM7	98	95.050	ENSATEG00000008557	lsm7	98	95.050	Anabas_testudineus
ENSLAFG00000029302	LSM7	98	91.089	ENSANAG00000022222	-	98	91.089	Aotus_nancymaae
ENSLAFG00000029302	LSM7	98	100.000	ENSANAG00000037196	-	98	100.000	Aotus_nancymaae
ENSLAFG00000029302	LSM7	98	94.059	ENSACLG00000021021	lsm7	98	94.059	Astatotilapia_calliptera
ENSLAFG00000029302	LSM7	98	95.050	ENSAMXG00000037622	lsm7	98	95.050	Astyanax_mexicanus
ENSLAFG00000029302	LSM7	98	100.000	ENSBTAG00000004521	LSM7	98	100.000	Bos_taurus
ENSLAFG00000029302	LSM7	99	56.863	WBGene00003081	lsm-7	98	56.863	Caenorhabditis_elegans
ENSLAFG00000029302	LSM7	52	100.000	ENSCJAG00000039713	-	66	100.000	Callithrix_jacchus
ENSLAFG00000029302	LSM7	99	99.020	ENSCAFG00000019409	LSM7	99	99.020	Canis_familiaris
ENSLAFG00000029302	LSM7	99	99.020	ENSCAFG00020018168	LSM7	76	97.087	Canis_lupus_dingo
ENSLAFG00000029302	LSM7	99	100.000	ENSCHIG00000023663	LSM7	99	100.000	Capra_hircus
ENSLAFG00000029302	LSM7	69	100.000	ENSCAPG00000014534	LSM7	100	100.000	Cavia_aperea
ENSLAFG00000029302	LSM7	98	100.000	ENSCPOG00000014025	LSM7	100	100.000	Cavia_porcellus
ENSLAFG00000029302	LSM7	98	100.000	ENSCCAG00000035456	LSM7	99	100.000	Cebus_capucinus
ENSLAFG00000029302	LSM7	98	100.000	ENSCATG00000023543	LSM7	98	100.000	Cercocebus_atys
ENSLAFG00000029302	LSM7	98	100.000	ENSCLAG00000011635	LSM7	98	100.000	Chinchilla_lanigera
ENSLAFG00000029302	LSM7	98	100.000	ENSCSAG00000011599	LSM7	98	100.000	Chlorocebus_sabaeus
ENSLAFG00000029302	LSM7	70	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSLAFG00000029302	LSM7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSLAFG00000029302	LSM7	98	100.000	ENSCANG00000035525	LSM7	98	100.000	Colobus_angolensis_palliatus
ENSLAFG00000029302	LSM7	87	88.889	ENSCGRG00001016005	-	92	88.889	Cricetulus_griseus_chok1gshd
ENSLAFG00000029302	LSM7	98	99.010	ENSCGRG00001000807	-	98	99.010	Cricetulus_griseus_chok1gshd
ENSLAFG00000029302	LSM7	100	98.058	ENSCGRG00000014355	-	99	98.058	Cricetulus_griseus_crigri
ENSLAFG00000029302	LSM7	87	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSLAFG00000029302	LSM7	99	94.118	ENSCSEG00000014900	lsm7	86	95.050	Cynoglossus_semilaevis
ENSLAFG00000029302	LSM7	100	95.146	ENSCVAG00000021091	lsm7	95	95.146	Cyprinodon_variegatus
ENSLAFG00000029302	LSM7	98	95.050	ENSDARG00000058328	lsm7	98	95.050	Danio_rerio
ENSLAFG00000029302	LSM7	98	98.020	ENSDORG00000024460	Lsm7	99	98.020	Dipodomys_ordii
ENSLAFG00000029302	LSM7	94	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSLAFG00000029302	LSM7	99	97.059	ENSETEG00000012788	LSM7	100	97.059	Echinops_telfairi
ENSLAFG00000029302	LSM7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSLAFG00000029302	LSM7	99	85.294	ENSEBUG00000016992	lsm7	98	85.294	Eptatretus_burgeri
ENSLAFG00000029302	LSM7	98	96.040	ENSECAG00000001440	LSM7	65	96.040	Equus_caballus
ENSLAFG00000029302	LSM7	98	99.010	ENSFCAG00000003445	LSM7	98	99.010	Felis_catus
ENSLAFG00000029302	LSM7	98	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSLAFG00000029302	LSM7	93	100.000	ENSFDAG00000007661	LSM7	100	100.000	Fukomys_damarensis
ENSLAFG00000029302	LSM7	100	95.146	ENSFHEG00000006349	lsm7	92	95.146	Fundulus_heteroclitus
ENSLAFG00000029302	LSM7	99	93.137	ENSGMOG00000013320	lsm7	99	93.137	Gadus_morhua
ENSLAFG00000029302	LSM7	98	96.040	ENSGAFG00000013902	lsm7	98	96.040	Gambusia_affinis
ENSLAFG00000029302	LSM7	99	94.118	ENSGACG00000010390	lsm7	99	94.118	Gasterosteus_aculeatus
ENSLAFG00000029302	LSM7	98	100.000	ENSGGOG00000010172	LSM7	98	100.000	Gorilla_gorilla
ENSLAFG00000029302	LSM7	100	93.204	ENSHBUG00000004616	lsm7	98	94.059	Haplochromis_burtoni
ENSLAFG00000029302	LSM7	98	100.000	ENSHGLG00000010587	LSM7	98	100.000	Heterocephalus_glaber_female
ENSLAFG00000029302	LSM7	98	100.000	ENSHGLG00100000852	LSM7	98	100.000	Heterocephalus_glaber_male
ENSLAFG00000029302	LSM7	98	94.059	ENSHCOG00000020252	lsm7	100	94.059	Hippocampus_comes
ENSLAFG00000029302	LSM7	98	95.050	ENSIPUG00000024724	lsm7	98	95.050	Ictalurus_punctatus
ENSLAFG00000029302	LSM7	99	100.000	ENSSTOG00000028372	LSM7	99	100.000	Ictidomys_tridecemlineatus
ENSLAFG00000029302	LSM7	98	98.020	ENSJJAG00000001936	Lsm7	98	98.020	Jaculus_jaculus
ENSLAFG00000029302	LSM7	98	96.040	ENSKMAG00000022151	lsm7	98	96.040	Kryptolebias_marmoratus
ENSLAFG00000029302	LSM7	98	95.050	ENSLBEG00000005203	lsm7	98	95.050	Labrus_bergylta
ENSLAFG00000029302	LSM7	99	98.039	ENSLACG00000015700	LSM7	99	98.039	Latimeria_chalumnae
ENSLAFG00000029302	LSM7	99	98.039	ENSLOCG00000004356	lsm7	99	98.039	Lepisosteus_oculatus
ENSLAFG00000029302	LSM7	98	100.000	ENSMFAG00000044572	LSM7	98	100.000	Macaca_fascicularis
ENSLAFG00000029302	LSM7	98	100.000	ENSMMUG00000000452	LSM7	99	100.000	Macaca_mulatta
ENSLAFG00000029302	LSM7	98	100.000	ENSMNEG00000004393	LSM7	98	100.000	Macaca_nemestrina
ENSLAFG00000029302	LSM7	98	100.000	ENSMLEG00000030852	LSM7	100	100.000	Mandrillus_leucophaeus
ENSLAFG00000029302	LSM7	98	94.059	ENSMAMG00000005410	lsm7	98	94.059	Mastacembelus_armatus
ENSLAFG00000029302	LSM7	98	94.059	ENSMZEG00005028055	lsm7	98	94.059	Maylandia_zebra
ENSLAFG00000029302	LSM7	98	98.020	ENSMGAG00000000750	LSM7	87	98.020	Meleagris_gallopavo
ENSLAFG00000029302	LSM7	99	99.020	ENSMAUG00000009276	Lsm7	99	99.020	Mesocricetus_auratus
ENSLAFG00000029302	LSM7	98	100.000	ENSMICG00000009988	-	98	100.000	Microcebus_murinus
ENSLAFG00000029302	LSM7	98	100.000	ENSMICG00000028619	-	98	100.000	Microcebus_murinus
ENSLAFG00000029302	LSM7	98	99.010	ENSMOCG00000016925	Lsm7	98	99.010	Microtus_ochrogaster
ENSLAFG00000029302	LSM7	98	95.050	ENSMMOG00000019645	lsm7	96	95.050	Mola_mola
ENSLAFG00000029302	LSM7	98	99.010	ENSMODG00000004722	LSM7	98	99.010	Monodelphis_domestica
ENSLAFG00000029302	LSM7	98	94.059	ENSMALG00000014511	lsm7	78	94.059	Monopterus_albus
ENSLAFG00000029302	LSM7	98	97.030	MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	Mus_caroli
ENSLAFG00000029302	LSM7	98	97.030	ENSMUSG00000035215	Lsm7	98	97.030	Mus_musculus
ENSLAFG00000029302	LSM7	98	97.030	MGP_PahariEiJ_G0031020	Lsm7	98	97.030	Mus_pahari
ENSLAFG00000029302	LSM7	98	97.030	MGP_SPRETEiJ_G0016425	Lsm7	98	97.030	Mus_spretus
ENSLAFG00000029302	LSM7	98	92.079	ENSMLUG00000024002	-	93	92.079	Myotis_lucifugus
ENSLAFG00000029302	LSM7	99	99.020	ENSMLUG00000013097	-	99	99.020	Myotis_lucifugus
ENSLAFG00000029302	LSM7	98	98.020	ENSNGAG00000021637	Lsm7	98	98.020	Nannospalax_galili
ENSLAFG00000029302	LSM7	100	93.204	ENSNBRG00000015770	lsm7	89	93.204	Neolamprologus_brichardi
ENSLAFG00000029302	LSM7	91	94.681	ENSNBRG00000001237	-	81	94.059	Neolamprologus_brichardi
ENSLAFG00000029302	LSM7	98	100.000	ENSNLEG00000002265	LSM7	98	100.000	Nomascus_leucogenys
ENSLAFG00000029302	LSM7	98	93.069	ENSODEG00000018769	-	98	93.069	Octodon_degus
ENSLAFG00000029302	LSM7	98	79.208	ENSODEG00000008190	-	98	79.208	Octodon_degus
ENSLAFG00000029302	LSM7	98	100.000	ENSODEG00000013590	-	98	100.000	Octodon_degus
ENSLAFG00000029302	LSM7	98	94.059	ENSONIG00000001801	lsm7	87	94.059	Oreochromis_niloticus
ENSLAFG00000029302	LSM7	99	95.098	ENSORLG00000023951	lsm7	98	95.050	Oryzias_latipes
ENSLAFG00000029302	LSM7	99	95.098	ENSORLG00020022226	lsm7	98	95.050	Oryzias_latipes_hni
ENSLAFG00000029302	LSM7	100	94.175	ENSORLG00015020044	lsm7	95	94.175	Oryzias_latipes_hsok
ENSLAFG00000029302	LSM7	100	94.175	ENSOMEG00000012806	lsm7	98	95.050	Oryzias_melastigma
ENSLAFG00000029302	LSM7	99	98.039	ENSOGAG00000000144	-	100	98.039	Otolemur_garnettii
ENSLAFG00000029302	LSM7	98	88.119	ENSOGAG00000024373	-	98	88.119	Otolemur_garnettii
ENSLAFG00000029302	LSM7	99	100.000	ENSOARG00000014013	LSM7	99	100.000	Ovis_aries
ENSLAFG00000029302	LSM7	98	100.000	ENSPPAG00000026500	LSM7	98	100.000	Pan_paniscus
ENSLAFG00000029302	LSM7	98	99.010	ENSPPRG00000008624	LSM7	98	99.010	Panthera_pardus
ENSLAFG00000029302	LSM7	98	99.010	ENSPTIG00000016252	LSM7	98	99.010	Panthera_tigris_altaica
ENSLAFG00000029302	LSM7	98	100.000	ENSPTRG00000010233	LSM7	98	100.000	Pan_troglodytes
ENSLAFG00000029302	LSM7	98	100.000	ENSPANG00000020668	LSM7	98	100.000	Papio_anubis
ENSLAFG00000029302	LSM7	100	96.117	ENSPKIG00000011325	lsm7	98	97.030	Paramormyrops_kingsleyae
ENSLAFG00000029302	LSM7	98	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSLAFG00000029302	LSM7	98	95.050	ENSPMGG00000006498	lsm7	98	95.050	Periophthalmus_magnuspinnatus
ENSLAFG00000029302	LSM7	98	99.010	ENSPCIG00000030454	LSM7	99	99.010	Phascolarctos_cinereus
ENSLAFG00000029302	LSM7	99	95.098	ENSPFOG00000012467	lsm7	90	95.098	Poecilia_formosa
ENSLAFG00000029302	LSM7	100	94.175	ENSPLAG00000000252	lsm7	95	94.175	Poecilia_latipinna
ENSLAFG00000029302	LSM7	100	94.175	ENSPMEG00000000587	lsm7	95	94.175	Poecilia_mexicana
ENSLAFG00000029302	LSM7	78	75.309	ENSPREG00000016718	lsm7	63	75.949	Poecilia_reticulata
ENSLAFG00000029302	LSM7	100	69.655	ENSPPYG00000009348	-	100	69.655	Pongo_abelii
ENSLAFG00000029302	LSM7	98	100.000	ENSPCOG00000017177	LSM7	99	100.000	Propithecus_coquereli
ENSLAFG00000029302	LSM7	98	94.059	ENSPNYG00000006938	lsm7	98	94.059	Pundamilia_nyererei
ENSLAFG00000029302	LSM7	98	95.050	ENSPNAG00000010141	lsm7	99	95.050	Pygocentrus_nattereri
ENSLAFG00000029302	LSM7	98	98.020	ENSRNOG00000019552	Lsm7	98	98.020	Rattus_norvegicus
ENSLAFG00000029302	LSM7	98	100.000	ENSRBIG00000035978	LSM7	98	100.000	Rhinopithecus_bieti
ENSLAFG00000029302	LSM7	98	100.000	ENSRROG00000034044	LSM7	98	100.000	Rhinopithecus_roxellana
ENSLAFG00000029302	LSM7	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSLAFG00000029302	LSM7	98	100.000	ENSSBOG00000034899	LSM7	98	100.000	Saimiri_boliviensis_boliviensis
ENSLAFG00000029302	LSM7	98	95.050	ENSSFOG00015006728	lsm7	98	95.050	Scleropages_formosus
ENSLAFG00000029302	LSM7	99	95.098	ENSSMAG00000004195	lsm7	93	95.098	Scophthalmus_maximus
ENSLAFG00000029302	LSM7	98	95.050	ENSSDUG00000001863	lsm7	98	95.050	Seriola_dumerili
ENSLAFG00000029302	LSM7	98	95.050	ENSSLDG00000016339	lsm7	98	95.050	Seriola_lalandi_dorsalis
ENSLAFG00000029302	LSM7	100	93.204	ENSSPAG00000015221	lsm7	98	95.050	Stegastes_partitus
ENSLAFG00000029302	LSM7	98	100.000	ENSSSCG00000013463	LSM7	99	100.000	Sus_scrofa
ENSLAFG00000029302	LSM7	98	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSLAFG00000029302	LSM7	98	95.050	ENSTRUG00000022913	lsm7	98	95.050	Takifugu_rubripes
ENSLAFG00000029302	LSM7	98	95.050	ENSTNIG00000015525	lsm7	98	95.050	Tetraodon_nigroviridis
ENSLAFG00000029302	LSM7	68	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSLAFG00000029302	LSM7	99	99.020	ENSUAMG00000000912	LSM7	85	99.020	Ursus_americanus
ENSLAFG00000029302	LSM7	100	97.087	ENSUMAG00000006556	LSM7	80	97.087	Ursus_maritimus
ENSLAFG00000029302	LSM7	69	98.592	ENSVVUG00000002640	LSM7	65	98.592	Vulpes_vulpes
ENSLAFG00000029302	LSM7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSLAFG00000029302	LSM7	98	96.040	ENSXCOG00000002572	lsm7	99	96.040	Xiphophorus_couchianus
ENSLAFG00000029302	LSM7	99	96.078	ENSXMAG00000018630	lsm7	98	96.040	Xiphophorus_maculatus