EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLAFG00000030837 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 1554 bases
Position: chrscaffold_15:53748002-53749555
Accession: 604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000021422	APOBEC_N	PF08210.11	5e-31	1	1
ENSLAFP00000021422	APOBEC_C	PF05240.14	6.1e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000028613	APOBEC1-201	669	-	ENSLAFP00000021422	223 (aa)	-	G3U0R4

Gene Model

Click here to download ENSLAFG00000030837's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000030837's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLAFG00000030837	APOBEC1	57	35.115	ENSLAFG00000000721	AICDA	67	35.115
ENSLAFG00000030837	APOBEC1	57	34.694	ENSLAFG00000027404	-	62	34.694
ENSLAFG00000030837	APOBEC1	59	33.813	ENSLAFG00000020906	-	70	33.813

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000030837	APOBEC1	100	76.682	ENSG00000111701	APOBEC1	94	76.682	Homo_sapiens
ENSLAFG00000030837	APOBEC1	99	77.928	ENSAMEG00000007098	APOBEC1	94	77.928	Ailuropoda_melanoleuca
ENSLAFG00000030837	APOBEC1	76	40.936	ENSACAG00000028578	-	93	40.936	Anolis_carolinensis
ENSLAFG00000030837	APOBEC1	100	77.130	ENSANAG00000027743	APOBEC1	90	77.130	Aotus_nancymaae
ENSLAFG00000030837	APOBEC1	100	73.094	ENSBTAG00000014683	APOBEC1	94	73.094	Bos_taurus
ENSLAFG00000030837	APOBEC1	99	76.018	ENSCJAG00000005398	APOBEC1	100	76.018	Callithrix_jacchus
ENSLAFG00000030837	APOBEC1	100	77.578	ENSCAFG00000013901	APOBEC1	94	77.578	Canis_familiaris
ENSLAFG00000030837	APOBEC1	100	78.027	ENSCAFG00020003511	APOBEC1	93	78.027	Canis_lupus_dingo
ENSLAFG00000030837	APOBEC1	100	71.749	ENSCHIG00000011898	APOBEC1	93	71.749	Capra_hircus
ENSLAFG00000030837	APOBEC1	60	77.612	ENSTSYG00000029141	APOBEC1	95	77.612	Carlito_syrichta
ENSLAFG00000030837	APOBEC1	96	67.757	ENSCAPG00000015882	-	99	67.757	Cavia_aperea
ENSLAFG00000030837	APOBEC1	99	65.315	ENSCPOG00000033068	APOBEC1	94	65.315	Cavia_porcellus
ENSLAFG00000030837	APOBEC1	100	77.130	ENSCCAG00000022258	APOBEC1	94	77.130	Cebus_capucinus
ENSLAFG00000030837	APOBEC1	100	78.475	ENSCATG00000021613	APOBEC1	90	78.475	Cercocebus_atys
ENSLAFG00000030837	APOBEC1	97	69.444	ENSCLAG00000014645	APOBEC1	94	69.444	Chinchilla_lanigera
ENSLAFG00000030837	APOBEC1	85	77.895	ENSCSAG00000009817	APOBEC1	99	77.895	Chlorocebus_sabaeus
ENSLAFG00000030837	APOBEC1	77	50.000	ENSCPBG00000014335	-	70	50.000	Chrysemys_picta_bellii
ENSLAFG00000030837	APOBEC1	97	41.364	ENSCPBG00000014331	-	88	41.364	Chrysemys_picta_bellii
ENSLAFG00000030837	APOBEC1	93	39.810	ENSCPBG00000017398	-	88	39.810	Chrysemys_picta_bellii
ENSLAFG00000030837	APOBEC1	90	47.291	ENSCPBG00000014329	-	56	47.291	Chrysemys_picta_bellii
ENSLAFG00000030837	APOBEC1	82	45.109	ENSCPBG00000014327	-	78	39.594	Chrysemys_picta_bellii
ENSLAFG00000030837	APOBEC1	82	47.283	ENSCPBG00000014328	-	80	47.283	Chrysemys_picta_bellii
ENSLAFG00000030837	APOBEC1	100	77.130	ENSCANG00000038359	APOBEC1	97	77.130	Colobus_angolensis_palliatus
ENSLAFG00000030837	APOBEC1	97	70.370	ENSCGRG00001011130	Apobec1	94	70.370	Cricetulus_griseus_chok1gshd
ENSLAFG00000030837	APOBEC1	97	70.370	ENSCGRG00000008644	Apobec1	94	70.370	Cricetulus_griseus_crigri
ENSLAFG00000030837	APOBEC1	100	82.063	ENSDNOG00000010926	APOBEC1	94	82.063	Dasypus_novemcinctus
ENSLAFG00000030837	APOBEC1	96	62.617	ENSDORG00000023717	Apobec1	100	62.617	Dipodomys_ordii
ENSLAFG00000030837	APOBEC1	99	77.027	ENSETEG00000004867	APOBEC1	94	77.027	Echinops_telfairi
ENSLAFG00000030837	APOBEC1	100	80.717	ENSEASG00005015951	APOBEC1	94	80.717	Equus_asinus_asinus
ENSLAFG00000030837	APOBEC1	85	80.526	ENSECAG00000017163	APOBEC1	99	80.526	Equus_caballus
ENSLAFG00000030837	APOBEC1	99	62.273	ENSEEUG00000009112	-	98	62.273	Erinaceus_europaeus
ENSLAFG00000030837	APOBEC1	91	53.431	ENSEEUG00000007530	-	97	53.431	Erinaceus_europaeus
ENSLAFG00000030837	APOBEC1	100	79.821	ENSFCAG00000009350	APOBEC1	94	79.821	Felis_catus
ENSLAFG00000030837	APOBEC1	65	50.000	ENSFALG00000007257	-	72	50.000	Ficedula_albicollis
ENSLAFG00000030837	APOBEC1	93	57.488	ENSFDAG00000018470	APOBEC1	99	57.488	Fukomys_damarensis
ENSLAFG00000030837	APOBEC1	72	49.383	ENSGAGG00000004947	-	78	53.600	Gopherus_agassizii
ENSLAFG00000030837	APOBEC1	96	36.866	ENSGAGG00000021745	-	76	36.866	Gopherus_agassizii
ENSLAFG00000030837	APOBEC1	87	42.714	ENSGAGG00000021744	-	78	42.714	Gopherus_agassizii
ENSLAFG00000030837	APOBEC1	72	47.205	ENSGAGG00000006624	-	58	47.205	Gopherus_agassizii
ENSLAFG00000030837	APOBEC1	91	48.544	ENSGAGG00000011837	-	90	52.381	Gopherus_agassizii
ENSLAFG00000030837	APOBEC1	99	62.162	ENSHGLG00000001495	APOBEC1	94	62.162	Heterocephalus_glaber_female
ENSLAFG00000030837	APOBEC1	99	62.162	ENSHGLG00100002187	APOBEC1	94	62.162	Heterocephalus_glaber_male
ENSLAFG00000030837	APOBEC1	96	65.888	ENSSTOG00000021971	APOBEC1	100	83.673	Ictidomys_tridecemlineatus
ENSLAFG00000030837	APOBEC1	97	69.907	ENSJJAG00000022108	Apobec1	94	69.907	Jaculus_jaculus
ENSLAFG00000030837	APOBEC1	100	78.924	ENSMFAG00000000277	APOBEC1	99	78.947	Macaca_fascicularis
ENSLAFG00000030837	APOBEC1	100	78.924	ENSMNEG00000029670	APOBEC1	94	78.924	Macaca_nemestrina
ENSLAFG00000030837	APOBEC1	100	78.475	ENSMLEG00000036301	APOBEC1	94	78.475	Mandrillus_leucophaeus
ENSLAFG00000030837	APOBEC1	97	69.907	ENSMAUG00000022167	Apobec1	97	69.907	Mesocricetus_auratus
ENSLAFG00000030837	APOBEC1	100	77.130	ENSMICG00000043645	APOBEC1	97	77.928	Microcebus_murinus
ENSLAFG00000030837	APOBEC1	100	67.265	ENSMODG00000018004	APOBEC1	94	67.265	Monodelphis_domestica
ENSLAFG00000030837	APOBEC1	96	69.767	ENSMUSG00000040613	Apobec1	94	69.767	Mus_musculus
ENSLAFG00000030837	APOBEC1	96	68.837	MGP_PahariEiJ_G0022580	-	94	68.837	Mus_pahari
ENSLAFG00000030837	APOBEC1	96	69.767	MGP_SPRETEiJ_G0029857	Apobec1	94	69.767	Mus_spretus
ENSLAFG00000030837	APOBEC1	100	75.336	ENSMPUG00000017532	APOBEC1	94	75.336	Mustela_putorius_furo
ENSLAFG00000030837	APOBEC1	97	71.759	ENSNGAG00000022607	Apobec1	94	71.759	Nannospalax_galili
ENSLAFG00000030837	APOBEC1	100	77.578	ENSNLEG00000005342	APOBEC1	94	77.578	Nomascus_leucogenys
ENSLAFG00000030837	APOBEC1	100	66.368	ENSMEUG00000013406	APOBEC1	94	66.368	Notamacropus_eugenii
ENSLAFG00000030837	APOBEC1	77	62.791	ENSOPRG00000009508	-	95	62.791	Ochotona_princeps
ENSLAFG00000030837	APOBEC1	100	76.233	ENSOCUG00000025736	APOBEC1	84	76.233	Oryctolagus_cuniculus
ENSLAFG00000030837	APOBEC1	100	78.027	ENSOGAG00000026415	APOBEC1	94	78.027	Otolemur_garnettii
ENSLAFG00000030837	APOBEC1	100	72.197	ENSOARG00000002072	APOBEC1	93	72.197	Ovis_aries
ENSLAFG00000030837	APOBEC1	100	70.852	ENSPPAG00000027657	APOBEC1	94	70.852	Pan_paniscus
ENSLAFG00000030837	APOBEC1	100	80.269	ENSPPRG00000012182	APOBEC1	94	80.269	Panthera_pardus
ENSLAFG00000030837	APOBEC1	100	80.269	ENSPTIG00000020280	APOBEC1	94	80.269	Panthera_tigris_altaica
ENSLAFG00000030837	APOBEC1	100	78.027	ENSPTRG00000004614	APOBEC1	94	78.027	Pan_troglodytes
ENSLAFG00000030837	APOBEC1	100	78.027	ENSPANG00000021027	APOBEC1	94	78.027	Papio_anubis
ENSLAFG00000030837	APOBEC1	57	49.167	ENSPSIG00000012791	-	71	49.167	Pelodiscus_sinensis
ENSLAFG00000030837	APOBEC1	78	45.402	ENSPSIG00000012568	-	75	45.402	Pelodiscus_sinensis
ENSLAFG00000030837	APOBEC1	97	72.222	ENSPEMG00000023841	Apobec1	94	72.222	Peromyscus_maniculatus_bairdii
ENSLAFG00000030837	APOBEC1	100	71.749	ENSPCIG00000023973	APOBEC1	94	71.749	Phascolarctos_cinereus
ENSLAFG00000030837	APOBEC1	100	77.130	ENSPPYG00000004228	APOBEC1	90	77.130	Pongo_abelii
ENSLAFG00000030837	APOBEC1	78	87.931	ENSPCAG00000008733	APOBEC1	93	87.931	Procavia_capensis
ENSLAFG00000030837	APOBEC1	99	80.631	ENSPCOG00000013957	APOBEC1	98	80.631	Propithecus_coquereli
ENSLAFG00000030837	APOBEC1	100	63.229	ENSPVAG00000010709	APOBEC1	94	63.229	Pteropus_vampyrus
ENSLAFG00000030837	APOBEC1	96	68.372	ENSRNOG00000015411	Apobec1	94	68.372	Rattus_norvegicus
ENSLAFG00000030837	APOBEC1	100	77.130	ENSRBIG00000031161	APOBEC1	94	77.130	Rhinopithecus_bieti
ENSLAFG00000030837	APOBEC1	100	77.130	ENSRROG00000033576	APOBEC1	99	76.842	Rhinopithecus_roxellana
ENSLAFG00000030837	APOBEC1	78	78.613	ENSSBOG00000030587	APOBEC1	98	78.613	Saimiri_boliviensis_boliviensis
ENSLAFG00000030837	APOBEC1	100	69.955	ENSSHAG00000008925	APOBEC1	98	69.955	Sarcophilus_harrisii
ENSLAFG00000030837	APOBEC1	77	64.535	ENSSARG00000000032	-	100	64.535	Sorex_araneus
ENSLAFG00000030837	APOBEC1	59	67.939	ENSSARG00000011972	-	99	67.939	Sorex_araneus
ENSLAFG00000030837	APOBEC1	81	45.652	ENSSPUG00000009044	-	71	45.652	Sphenodon_punctatus
ENSLAFG00000030837	APOBEC1	99	72.072	ENSSSCG00000000668	APOBEC1	94	72.072	Sus_scrofa
ENSLAFG00000030837	APOBEC1	64	52.083	ENSTGUG00000013118	-	99	52.083	Taeniopygia_guttata
ENSLAFG00000030837	APOBEC1	99	72.851	ENSTBEG00000010043	APOBEC1	94	72.851	Tupaia_belangeri
ENSLAFG00000030837	APOBEC1	78	72.414	ENSTTRG00000014015	APOBEC1	93	72.414	Tursiops_truncatus
ENSLAFG00000030837	APOBEC1	99	77.477	ENSUAMG00000011636	APOBEC1	91	77.477	Ursus_americanus
ENSLAFG00000030837	APOBEC1	99	77.477	ENSUMAG00000016552	APOBEC1	91	77.477	Ursus_maritimus
ENSLAFG00000030837	APOBEC1	100	71.749	ENSVPAG00000001343	APOBEC1	94	71.749	Vicugna_pacos
ENSLAFG00000030837	APOBEC1	100	77.578	ENSVVUG00000010522	APOBEC1	94	77.578	Vulpes_vulpes