EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLAFG00000031328 (Gene tree)
Gene ID: -
Gene Symbol: MBD1
Alias: CXXC3|PCM1
Full Name: methyl-CpG binding domain protein 1
Gene Type: protein_coding
Species: Loxodonta_africana
Status: putative
Strand: Plus strand
Length: 16251 bases
Position: chrscaffold_4:49195535-49211785
Accession: 6916
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLAFP00000027543	MBD	PF01429.19	5.3e-15	1	1
ENSLAFP00000027183	MBD	PF01429.19	6.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLAFT00000027148	MBD1-202	1569	-	ENSLAFP00000027543	522 (aa)	-	G3UI85
ENSLAFT00000029584	MBD1-201	1866	-	ENSLAFP00000027183	621 (aa)	-	G3UH75

Gene Model

Click here to download ENSLAFG00000031328's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLAFG00000031328's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLAFG00000031328	MBD1	98	75.205	ENSG00000141644	MBD1	99	75.954	Homo_sapiens
ENSLAFG00000031328	MBD1	97	73.768	ENSAMEG00000000238	MBD1	95	73.132	Ailuropoda_melanoleuca
ENSLAFG00000031328	MBD1	65	30.769	ENSAOCG00000020272	mbd1b	50	31.106	Amphiprion_ocellaris
ENSLAFG00000031328	MBD1	65	30.118	ENSAPEG00000023230	mbd1b	50	30.769	Amphiprion_percula
ENSLAFG00000031328	MBD1	62	41.176	ENSACAG00000006091	-	100	40.494	Anolis_carolinensis
ENSLAFG00000031328	MBD1	100	75.079	ENSANAG00000036253	MBD1	100	75.079	Aotus_nancymaae
ENSLAFG00000031328	MBD1	100	72.699	ENSBTAG00000003801	MBD1	99	75.331	Bos_taurus
ENSLAFG00000031328	MBD1	97	75.874	ENSCJAG00000004959	MBD1	99	70.469	Callithrix_jacchus
ENSLAFG00000031328	MBD1	98	76.093	ENSCAFG00000018928	MBD1	95	72.771	Canis_familiaris
ENSLAFG00000031328	MBD1	100	74.652	ENSCAFG00020024272	MBD1	100	74.034	Canis_lupus_dingo
ENSLAFG00000031328	MBD1	97	75.000	ENSCHIG00000021134	MBD1	99	75.497	Capra_hircus
ENSLAFG00000031328	MBD1	98	74.141	ENSTSYG00000000509	MBD1	99	71.019	Carlito_syrichta
ENSLAFG00000031328	MBD1	100	63.864	ENSCAPG00000015782	MBD1	100	62.379	Cavia_aperea
ENSLAFG00000031328	MBD1	100	64.350	ENSCPOG00000001671	MBD1	99	61.875	Cavia_porcellus
ENSLAFG00000031328	MBD1	97	74.252	ENSCCAG00000034600	MBD1	92	73.399	Cebus_capucinus
ENSLAFG00000031328	MBD1	97	76.119	ENSCATG00000029959	MBD1	99	76.119	Cercocebus_atys
ENSLAFG00000031328	MBD1	97	69.745	ENSCLAG00000007457	MBD1	87	69.268	Chinchilla_lanigera
ENSLAFG00000031328	MBD1	97	75.954	ENSCSAG00000018070	MBD1	99	75.954	Chlorocebus_sabaeus
ENSLAFG00000031328	MBD1	97	75.622	ENSCANG00000033425	MBD1	99	75.622	Colobus_angolensis_palliatus
ENSLAFG00000031328	MBD1	100	66.453	ENSCGRG00001014843	Mbd1	100	66.292	Cricetulus_griseus_chok1gshd
ENSLAFG00000031328	MBD1	100	58.791	ENSCGRG00000014135	Mbd1	100	58.791	Cricetulus_griseus_crigri
ENSLAFG00000031328	MBD1	100	70.279	ENSDNOG00000015998	MBD1	100	70.124	Dasypus_novemcinctus
ENSLAFG00000031328	MBD1	91	68.220	ENSDORG00000013917	Mbd1	100	69.492	Dipodomys_ordii
ENSLAFG00000031328	MBD1	100	73.611	ENSEASG00005003857	MBD1	100	74.537	Equus_asinus_asinus
ENSLAFG00000031328	MBD1	100	73.457	ENSECAG00000011497	MBD1	79	77.152	Equus_caballus
ENSLAFG00000031328	MBD1	100	76.080	ENSFCAG00000015730	MBD1	99	72.973	Felis_catus
ENSLAFG00000031328	MBD1	98	61.759	ENSFDAG00000011085	MBD1	97	61.759	Fukomys_damarensis
ENSLAFG00000031328	MBD1	66	35.500	ENSFHEG00000020120	mbd1b	51	31.166	Fundulus_heteroclitus
ENSLAFG00000031328	MBD1	98	75.041	ENSGGOG00000016966	MBD1	99	75.788	Gorilla_gorilla
ENSLAFG00000031328	MBD1	97	73.466	ENSHGLG00000008740	MBD1	99	73.466	Heterocephalus_glaber_female
ENSLAFG00000031328	MBD1	90	65.204	ENSHGLG00100005198	MBD1	98	71.212	Heterocephalus_glaber_male
ENSLAFG00000031328	MBD1	100	71.835	ENSSTOG00000007780	MBD1	100	71.835	Ictidomys_tridecemlineatus
ENSLAFG00000031328	MBD1	100	60.387	ENSJJAG00000022859	Mbd1	100	60.256	Jaculus_jaculus
ENSLAFG00000031328	MBD1	64	37.108	ENSLACG00000002414	-	58	37.108	Latimeria_chalumnae
ENSLAFG00000031328	MBD1	97	75.788	ENSMFAG00000026335	MBD1	99	75.788	Macaca_fascicularis
ENSLAFG00000031328	MBD1	97	72.771	ENSMMUG00000009050	MBD1	99	71.975	Macaca_mulatta
ENSLAFG00000031328	MBD1	97	75.788	ENSMNEG00000038822	MBD1	99	75.788	Macaca_nemestrina
ENSLAFG00000031328	MBD1	97	76.119	ENSMLEG00000043121	MBD1	99	76.119	Mandrillus_leucophaeus
ENSLAFG00000031328	MBD1	97	74.346	ENSMICG00000006414	MBD1	99	74.346	Microcebus_murinus
ENSLAFG00000031328	MBD1	63	41.176	ENSMODG00000001286	-	57	41.728	Monodelphis_domestica
ENSLAFG00000031328	MBD1	68	30.349	ENSMALG00000007808	mbd1b	52	30.603	Monopterus_albus
ENSLAFG00000031328	MBD1	100	59.476	ENSMUSG00000024561	Mbd1	100	59.168	Mus_musculus
ENSLAFG00000031328	MBD1	97	58.842	MGP_PahariEiJ_G0019128	Mbd1	99	59.003	Mus_pahari
ENSLAFG00000031328	MBD1	96	59.223	MGP_SPRETEiJ_G0023304	Mbd1	99	58.900	Mus_spretus
ENSLAFG00000031328	MBD1	97	73.768	ENSMPUG00000008843	MBD1	95	72.019	Mustela_putorius_furo
ENSLAFG00000031328	MBD1	97	72.134	ENSMLUG00000008286	MBD1	95	71.338	Myotis_lucifugus
ENSLAFG00000031328	MBD1	100	59.826	ENSNGAG00000011412	Mbd1	100	59.511	Nannospalax_galili
ENSLAFG00000031328	MBD1	97	59.235	ENSNLEG00000032711	-	90	59.216	Nomascus_leucogenys
ENSLAFG00000031328	MBD1	97	75.374	ENSNLEG00000011661	-	99	75.290	Nomascus_leucogenys
ENSLAFG00000031328	MBD1	97	62.355	ENSOPRG00000007647	MBD1	99	62.355	Ochotona_princeps
ENSLAFG00000031328	MBD1	100	63.781	ENSODEG00000018451	MBD1	100	64.469	Octodon_degus
ENSLAFG00000031328	MBD1	63	32.048	ENSONIG00000020289	mbd1b	50	32.235	Oreochromis_niloticus
ENSLAFG00000031328	MBD1	83	42.589	ENSOANG00000014593	-	100	42.214	Ornithorhynchus_anatinus
ENSLAFG00000031328	MBD1	97	68.680	ENSOCUG00000006554	MBD1	99	68.045	Oryctolagus_cuniculus
ENSLAFG00000031328	MBD1	97	70.016	ENSOGAG00000003784	MBD1	95	69.231	Otolemur_garnettii
ENSLAFG00000031328	MBD1	97	72.698	ENSOARG00000004218	MBD1	94	71.746	Ovis_aries
ENSLAFG00000031328	MBD1	98	75.205	ENSPPAG00000038886	MBD1	99	75.954	Pan_paniscus
ENSLAFG00000031328	MBD1	98	77.213	ENSPPRG00000021387	MBD1	99	76.821	Panthera_pardus
ENSLAFG00000031328	MBD1	98	77.377	ENSPTIG00000021231	MBD1	99	76.821	Panthera_tigris_altaica
ENSLAFG00000031328	MBD1	97	75.954	ENSPTRG00000010021	MBD1	99	75.954	Pan_troglodytes
ENSLAFG00000031328	MBD1	98	75.369	ENSPANG00000010867	MBD1	99	72.293	Papio_anubis
ENSLAFG00000031328	MBD1	100	57.021	ENSPEMG00000022630	Mbd1	100	57.216	Peromyscus_maniculatus_bairdii
ENSLAFG00000031328	MBD1	95	43.478	ENSPCIG00000027937	-	79	42.626	Phascolarctos_cinereus
ENSLAFG00000031328	MBD1	67	34.848	ENSPMEG00000024145	mbd1b	51	51.064	Poecilia_mexicana
ENSLAFG00000031328	MBD1	97	75.954	ENSPPYG00000009158	MBD1	90	75.954	Pongo_abelii
ENSLAFG00000031328	MBD1	97	75.246	ENSPCAG00000001648	MBD1	99	75.246	Procavia_capensis
ENSLAFG00000031328	MBD1	98	75.286	ENSPCOG00000012450	MBD1	99	76.119	Propithecus_coquereli
ENSLAFG00000031328	MBD1	100	54.647	ENSRNOG00000024104	Mbd1	100	55.224	Rattus_norvegicus
ENSLAFG00000031328	MBD1	97	68.988	ENSRBIG00000041294	MBD1	99	68.988	Rhinopithecus_bieti
ENSLAFG00000031328	MBD1	97	75.456	ENSRROG00000032517	MBD1	99	75.456	Rhinopithecus_roxellana
ENSLAFG00000031328	MBD1	98	75.041	ENSSBOG00000027169	MBD1	98	69.778	Saimiri_boliviensis_boliviensis
ENSLAFG00000031328	MBD1	58	81.690	ENSSHAG00000003661	-	100	46.042	Sarcophilus_harrisii
ENSLAFG00000031328	MBD1	65	30.682	ENSSPAG00000021447	mbd1b	51	30.641	Stegastes_partitus
ENSLAFG00000031328	MBD1	100	75.241	ENSSSCG00000004516	MBD1	100	74.759	Sus_scrofa
ENSLAFG00000031328	MBD1	69	70.968	ENSTBEG00000012651	-	61	73.840	Tupaia_belangeri
ENSLAFG00000031328	MBD1	97	75.000	ENSTTRG00000015523	MBD1	99	75.000	Tursiops_truncatus
ENSLAFG00000031328	MBD1	100	70.788	ENSUAMG00000004752	MBD1	99	72.968	Ursus_americanus
ENSLAFG00000031328	MBD1	97	77.152	ENSUMAG00000002947	MBD1	99	75.993	Ursus_maritimus