EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000000292 (Gene tree)
Gene ID: 109984029
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 4492 bases
Position: chrFKLU01000064.1:947329-951820
Accession: 109984029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000000364	RRM_1	PF00076.22	2.2e-24	1	1
ENSLBEP00000000343	RRM_1	PF00076.22	2.9e-24	1	1
ENSLBEP00000000351	RRM_1	PF00076.22	2.9e-24	1	1
ENSLBEP00000000356	RRM_1	PF00076.22	3e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000000380	-	908	-	ENSLBEP00000000364	161 (aa)	-	-
ENSLBET00000000357	-	924	-	ENSLBEP00000000343	180 (aa)	-	-
ENSLBET00000000365	-	971	-	ENSLBEP00000000351	181 (aa)	-	-
ENSLBET00000000371	-	974	XM_020634009	ENSLBEP00000000356	183 (aa)	XP_020489665	UPI0009B305D3

Gene Model

Click here to download ENSLBEG00000000292's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000000292's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000000292	cirbpa	72	69.231	ENSLBEG00000027731	-	70	77.907
ENSLBEG00000000292	cirbpa	56	31.522	ENSLBEG00000013364	srsf3b	63	30.769
ENSLBEG00000000292	cirbpa	51	34.722	ENSLBEG00000008073	elavl3	62	34.615
ENSLBEG00000000292	cirbpa	50	41.558	ENSLBEG00000006362	-	66	41.558
ENSLBEG00000000292	cirbpa	51	36.111	ENSLBEG00000027924	ELAVL2	62	35.616
ENSLBEG00000000292	cirbpa	74	41.573	ENSLBEG00000027508	hnrnpd	51	41.573
ENSLBEG00000000292	cirbpa	62	35.294	ENSLBEG00000020441	ncbp2	54	35.227

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000000292	cirbpa	58	80.645	ENSAPOG00000004458	cirbpa	100	58.201	Acanthochromis_polyacanthus
ENSLBEG00000000292	cirbpa	100	67.045	ENSACIG00000016116	cirbpa	100	67.045	Amphilophus_citrinellus
ENSLBEG00000000292	cirbpa	100	57.838	ENSAOCG00000016212	cirbpa	100	61.957	Amphiprion_ocellaris
ENSLBEG00000000292	cirbpa	100	58.602	ENSAPEG00000011989	cirbpa	100	62.703	Amphiprion_percula
ENSLBEG00000000292	cirbpa	100	62.295	ENSATEG00000014985	cirbpa	100	62.842	Anabas_testudineus
ENSLBEG00000000292	cirbpa	100	67.614	ENSACLG00000002094	-	100	67.614	Astatotilapia_calliptera
ENSLBEG00000000292	cirbpa	78	56.800	ENSAMXG00000002894	cirbpa	95	55.556	Astyanax_mexicanus
ENSLBEG00000000292	cirbpa	52	72.289	ENSAMXG00000015612	cirbpb	82	59.770	Astyanax_mexicanus
ENSLBEG00000000292	cirbpa	100	54.884	ENSCSEG00000014344	cirbpa	100	57.360	Cynoglossus_semilaevis
ENSLBEG00000000292	cirbpa	100	62.500	ENSCVAG00000004853	cirbpa	100	63.021	Cyprinodon_variegatus
ENSLBEG00000000292	cirbpa	52	72.289	ENSDARG00000013351	cirbpb	92	54.976	Danio_rerio
ENSLBEG00000000292	cirbpa	52	67.470	ENSDARG00000103672	cirbpa	100	51.075	Danio_rerio
ENSLBEG00000000292	cirbpa	50	80.247	ENSELUG00000009891	cirbpa	100	63.500	Esox_lucius
ENSLBEG00000000292	cirbpa	52	72.619	ENSELUG00000019588	cirbpb	100	55.556	Esox_lucius
ENSLBEG00000000292	cirbpa	50	74.074	ENSELUG00000004675	-	76	58.219	Esox_lucius
ENSLBEG00000000292	cirbpa	100	62.222	ENSFHEG00000002580	cirbpa	100	67.760	Fundulus_heteroclitus
ENSLBEG00000000292	cirbpa	50	71.605	ENSGMOG00000012137	cirbpa	100	56.545	Gadus_morhua
ENSLBEG00000000292	cirbpa	99	54.167	ENSGMOG00000007179	cirbpb	97	53.801	Gadus_morhua
ENSLBEG00000000292	cirbpa	50	69.136	ENSGMOG00000020447	-	90	50.943	Gadus_morhua
ENSLBEG00000000292	cirbpa	100	63.978	ENSGAFG00000008654	cirbpa	100	65.405	Gambusia_affinis
ENSLBEG00000000292	cirbpa	100	59.896	ENSGACG00000015206	cirbpa	100	57.812	Gasterosteus_aculeatus
ENSLBEG00000000292	cirbpa	100	60.819	ENSGACG00000014978	-	100	57.143	Gasterosteus_aculeatus
ENSLBEG00000000292	cirbpa	100	62.842	ENSHBUG00000022060	cirbpa	100	65.027	Haplochromis_burtoni
ENSLBEG00000000292	cirbpa	50	81.481	ENSHCOG00000001170	cirbpa	100	63.462	Hippocampus_comes
ENSLBEG00000000292	cirbpa	52	71.084	ENSIPUG00000000698	cirbpb	100	56.098	Ictalurus_punctatus
ENSLBEG00000000292	cirbpa	100	62.500	ENSKMAG00000005905	cirbpa	100	60.541	Kryptolebias_marmoratus
ENSLBEG00000000292	cirbpa	100	62.032	ENSMAMG00000010168	cirbpa	100	64.286	Mastacembelus_armatus
ENSLBEG00000000292	cirbpa	100	62.842	ENSMZEG00005025577	-	100	65.027	Maylandia_zebra
ENSLBEG00000000292	cirbpa	100	60.000	ENSMALG00000020092	cirbpa	100	64.286	Monopterus_albus
ENSLBEG00000000292	cirbpa	100	62.842	ENSNBRG00000019658	cirbpa	100	65.027	Neolamprologus_brichardi
ENSLBEG00000000292	cirbpa	100	65.909	ENSONIG00000010169	cirbpa	100	65.909	Oreochromis_niloticus
ENSLBEG00000000292	cirbpa	100	64.481	ENSORLG00000015433	cirbpa	100	64.773	Oryzias_latipes
ENSLBEG00000000292	cirbpa	100	64.481	ENSORLG00020016909	cirbpa	100	64.773	Oryzias_latipes_hni
ENSLBEG00000000292	cirbpa	100	64.481	ENSORLG00015016636	cirbpa	100	64.773	Oryzias_latipes_hsok
ENSLBEG00000000292	cirbpa	100	64.571	ENSOMEG00000021469	cirbpa	73	65.714	Oryzias_melastigma
ENSLBEG00000000292	cirbpa	99	62.431	ENSPMGG00000017342	cirbpa	95	62.304	Periophthalmus_magnuspinnatus
ENSLBEG00000000292	cirbpa	100	63.102	ENSPFOG00000015653	cirbpa	100	64.948	Poecilia_formosa
ENSLBEG00000000292	cirbpa	100	62.842	ENSPLAG00000011125	cirbpa	100	65.104	Poecilia_latipinna
ENSLBEG00000000292	cirbpa	100	63.441	ENSPMEG00000013878	cirbpa	100	65.285	Poecilia_mexicana
ENSLBEG00000000292	cirbpa	99	62.431	ENSPREG00000018042	cirbpa	98	64.286	Poecilia_reticulata
ENSLBEG00000000292	cirbpa	100	62.842	ENSPNYG00000007198	-	100	65.027	Pundamilia_nyererei
ENSLBEG00000000292	cirbpa	100	53.431	ENSPNAG00000019997	cirbpb	100	58.706	Pygocentrus_nattereri
ENSLBEG00000000292	cirbpa	50	65.432	ENSPNAG00000024569	cirbpa	100	54.497	Pygocentrus_nattereri
ENSLBEG00000000292	cirbpa	100	56.383	ENSSFOG00015005346	cirbpb	100	57.592	Scleropages_formosus
ENSLBEG00000000292	cirbpa	100	63.131	ENSSMAG00000002412	cirbpa	100	62.626	Scophthalmus_maximus
ENSLBEG00000000292	cirbpa	100	55.738	ENSSDUG00000016099	cirbpa	100	57.471	Seriola_dumerili
ENSLBEG00000000292	cirbpa	100	64.242	ENSSPAG00000023037	cirbpa	99	61.078	Stegastes_partitus
ENSLBEG00000000292	cirbpa	100	65.027	ENSTRUG00000010187	cirbpa	100	64.368	Takifugu_rubripes
ENSLBEG00000000292	cirbpa	100	61.878	ENSTNIG00000000450	cirbpa	100	62.431	Tetraodon_nigroviridis
ENSLBEG00000000292	cirbpa	99	62.983	ENSXCOG00000008262	cirbpa	92	79.452	Xiphophorus_couchianus
ENSLBEG00000000292	cirbpa	100	63.784	ENSXMAG00000019336	cirbpa	100	66.120	Xiphophorus_maculatus