EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000001071 (Gene tree)
Gene ID: 109992843
Gene Symbol: -
Alias: -
Full Name: RNA-binding protein 4.1-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 7254 bases
Position: chrFKLU01000242.1:393832-401085
Accession: 109992843
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000001351	RRM_5	PF13893.6	1.4e-11	1	2
ENSLBEP00000001351	RRM_5	PF13893.6	1.4e-11	2	2
ENSLBEP00000001351	RRM_1	PF00076.22	1.1e-28	1	2
ENSLBEP00000001351	RRM_1	PF00076.22	1.1e-28	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000001443	-	5520	XM_020645614	ENSLBEP00000001351	347 (aa)	XP_020501270	UPI0009B3E0C3

Gene Model

Click here to download ENSLBEG00000001071's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000001071's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000001071	-	98	42.132	ENSLBEG00000019756	-	86	52.899
ENSLBEG00000001071	-	100	49.351	ENSLBEG00000019782	rbm4.1	65	54.667
ENSLBEG00000001071	-	55	72.917	ENSLBEG00000001025	rbm4.3	68	78.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000001071	-	100	88.539	ENSAPOG00000002953	rbm4.3	100	88.539	Acanthochromis_polyacanthus
ENSLBEG00000001071	-	97	68.732	ENSAPOG00000002991	rbm4.3	96	66.864	Acanthochromis_polyacanthus
ENSLBEG00000001071	-	100	86.782	ENSACIG00000021311	-	100	85.632	Amphilophus_citrinellus
ENSLBEG00000001071	-	97	70.030	ENSACIG00000021295	rbm4.3	96	68.546	Amphilophus_citrinellus
ENSLBEG00000001071	-	97	69.231	ENSAOCG00000007992	rbm4.3	96	67.160	Amphiprion_ocellaris
ENSLBEG00000001071	-	100	90.490	ENSAOCG00000008015	rbm4.3	100	90.202	Amphiprion_ocellaris
ENSLBEG00000001071	-	100	90.202	ENSAPEG00000017324	rbm4.3	100	88.184	Amphiprion_percula
ENSLBEG00000001071	-	97	68.935	ENSAPEG00000017288	rbm4.3	96	67.160	Amphiprion_percula
ENSLBEG00000001071	-	100	93.084	ENSATEG00000019375	rbm4.3	100	91.643	Anabas_testudineus
ENSLBEG00000001071	-	97	69.912	ENSATEG00000019395	rbm4.3	96	69.912	Anabas_testudineus
ENSLBEG00000001071	-	99	68.376	ENSACLG00000010642	rbm4.3	99	67.521	Astatotilapia_calliptera
ENSLBEG00000001071	-	100	84.483	ENSACLG00000010620	-	100	84.483	Astatotilapia_calliptera
ENSLBEG00000001071	-	61	75.472	ENSAMXG00000040224	rbm4.3	82	71.707	Astyanax_mexicanus
ENSLBEG00000001071	-	100	82.286	ENSCSEG00000013659	rbm4.3	100	81.429	Cynoglossus_semilaevis
ENSLBEG00000001071	-	100	71.591	ENSCVAG00000008508	rbm4.3	100	75.284	Cyprinodon_variegatus
ENSLBEG00000001071	-	99	65.903	ENSCVAG00000008502	rbm4.3	99	66.189	Cyprinodon_variegatus
ENSLBEG00000001071	-	95	70.448	ENSDARG00000022129	rbm4.3	97	69.795	Danio_rerio
ENSLBEG00000001071	-	99	73.714	ENSELUG00000022150	rbm4.3	97	72.353	Esox_lucius
ENSLBEG00000001071	-	100	70.339	ENSELUG00000022168	rbm4.3	100	69.801	Esox_lucius
ENSLBEG00000001071	-	99	75.358	ENSELUG00000022155	rbm4.3	99	74.138	Esox_lucius
ENSLBEG00000001071	-	81	80.357	ENSFHEG00000023137	rbm4.3	84	80.443	Fundulus_heteroclitus
ENSLBEG00000001071	-	100	61.364	ENSGAFG00000001935	rbm4.3	100	61.254	Gambusia_affinis
ENSLBEG00000001071	-	97	64.223	ENSGACG00000019980	rbm4.3	95	64.535	Gasterosteus_aculeatus
ENSLBEG00000001071	-	99	68.946	ENSHBUG00000009051	rbm4.3	99	68.091	Haplochromis_burtoni
ENSLBEG00000001071	-	100	84.483	ENSHBUG00000009020	-	100	84.483	Haplochromis_burtoni
ENSLBEG00000001071	-	99	58.333	ENSHCOG00000010363	rbm4.3	94	57.349	Hippocampus_comes
ENSLBEG00000001071	-	95	73.952	ENSHCOG00000010349	rbm4.3	100	72.727	Hippocampus_comes
ENSLBEG00000001071	-	100	69.602	ENSIPUG00000022943	RBM4B	100	67.330	Ictalurus_punctatus
ENSLBEG00000001071	-	100	74.929	ENSKMAG00000017468	rbm4.3	100	71.795	Kryptolebias_marmoratus
ENSLBEG00000001071	-	97	62.611	ENSKMAG00000014541	rbm4.3	95	62.353	Kryptolebias_marmoratus
ENSLBEG00000001071	-	95	62.431	ENSLOCG00000002755	rbm4.3	100	62.005	Lepisosteus_oculatus
ENSLBEG00000001071	-	100	93.372	ENSMAMG00000004715	-	84	92.219	Mastacembelus_armatus
ENSLBEG00000001071	-	97	68.249	ENSMAMG00000004701	rbm4.3	96	68.546	Mastacembelus_armatus
ENSLBEG00000001071	-	99	68.376	ENSMZEG00005028540	rbm4.3	99	67.521	Maylandia_zebra
ENSLBEG00000001071	-	100	81.034	ENSMZEG00005007417	-	100	81.322	Maylandia_zebra
ENSLBEG00000001071	-	85	79.054	ENSMZEG00005028537	-	85	77.888	Maylandia_zebra
ENSLBEG00000001071	-	86	70.134	ENSMZEG00005007441	rbm4.3	79	67.785	Maylandia_zebra
ENSLBEG00000001071	-	97	65.882	ENSMMOG00000012191	rbm4.3	96	64.602	Mola_mola
ENSLBEG00000001071	-	97	67.262	ENSMALG00000015014	-	96	65.179	Monopterus_albus
ENSLBEG00000001071	-	91	67.089	ENSMALG00000003032	rbm4.3	95	64.873	Monopterus_albus
ENSLBEG00000001071	-	85	93.898	ENSMALG00000003001	rbm4.3	87	92.203	Monopterus_albus
ENSLBEG00000001071	-	97	68.639	ENSNBRG00000012372	rbm4.3	96	66.568	Neolamprologus_brichardi
ENSLBEG00000001071	-	100	84.483	ENSONIG00000018380	-	100	84.483	Oreochromis_niloticus
ENSLBEG00000001071	-	97	68.915	ENSONIG00000018378	rbm4.3	96	67.155	Oreochromis_niloticus
ENSLBEG00000001071	-	100	74.722	ENSORLG00000011589	rbm4.3	100	72.500	Oryzias_latipes
ENSLBEG00000001071	-	100	72.222	ENSORLG00000012473	rbm4.3	100	69.722	Oryzias_latipes
ENSLBEG00000001071	-	96	60.299	ENSORLG00000024749	rbm4.3	95	56.380	Oryzias_latipes
ENSLBEG00000001071	-	100	72.222	ENSORLG00020012464	rbm4.3	100	69.722	Oryzias_latipes_hni
ENSLBEG00000001071	-	99	61.095	ENSORLG00020012482	rbm4.3	99	57.307	Oryzias_latipes_hni
ENSLBEG00000001071	-	100	74.444	ENSORLG00020012474	rbm4.3	100	72.500	Oryzias_latipes_hni
ENSLBEG00000001071	-	100	72.222	ENSORLG00015013686	rbm4.3	100	69.722	Oryzias_latipes_hsok
ENSLBEG00000001071	-	96	60.597	ENSORLG00015013721	rbm4.3	95	56.677	Oryzias_latipes_hsok
ENSLBEG00000001071	-	100	73.333	ENSORLG00015013698	rbm4.3	100	72.778	Oryzias_latipes_hsok
ENSLBEG00000001071	-	100	71.309	ENSOMEG00000005918	rbm4.3	100	69.359	Oryzias_melastigma
ENSLBEG00000001071	-	96	61.791	ENSOMEG00000005950	rbm4.3	95	62.687	Oryzias_melastigma
ENSLBEG00000001071	-	97	71.920	ENSOMEG00000005929	rbm4.3	100	69.806	Oryzias_melastigma
ENSLBEG00000001071	-	94	70.393	ENSPKIG00000007001	rbm4.3	100	68.571	Paramormyrops_kingsleyae
ENSLBEG00000001071	-	99	64.205	ENSPLAG00000006077	rbm4.3	99	63.068	Poecilia_latipinna
ENSLBEG00000001071	-	100	75.000	ENSPLAG00000006131	rbm4.3	100	75.852	Poecilia_latipinna
ENSLBEG00000001071	-	100	74.716	ENSPMEG00000024271	rbm4.3	100	75.568	Poecilia_mexicana
ENSLBEG00000001071	-	100	73.011	ENSPMEG00000024263	rbm4.3	100	76.136	Poecilia_mexicana
ENSLBEG00000001071	-	99	64.957	ENSPMEG00000024260	rbm4.3	99	64.103	Poecilia_mexicana
ENSLBEG00000001071	-	99	64.225	ENSPREG00000002093	-	99	64.387	Poecilia_reticulata
ENSLBEG00000001071	-	100	71.839	ENSPREG00000002156	rbm4.3	100	72.126	Poecilia_reticulata
ENSLBEG00000001071	-	100	84.483	ENSPNYG00000018541	rbm4.3	100	84.483	Pundamilia_nyererei
ENSLBEG00000001071	-	99	68.376	ENSPNYG00000018564	rbm4.3	99	67.806	Pundamilia_nyererei
ENSLBEG00000001071	-	100	69.337	ENSPNAG00000013053	rbm4.3	100	68.524	Pygocentrus_nattereri
ENSLBEG00000001071	-	100	67.403	ENSSFOG00015015563	rbm4.3	100	66.851	Scleropages_formosus
ENSLBEG00000001071	-	100	88.761	ENSSMAG00000013644	rbm4.3	100	88.473	Scophthalmus_maximus
ENSLBEG00000001071	-	97	67.262	ENSSMAG00000013653	rbm4.3	96	68.452	Scophthalmus_maximus
ENSLBEG00000001071	-	100	93.948	ENSSDUG00000018435	rbm4.3	100	92.507	Seriola_dumerili
ENSLBEG00000001071	-	97	68.732	ENSSDUG00000018422	rbm4.3	96	66.077	Seriola_dumerili
ENSLBEG00000001071	-	100	93.948	ENSSLDG00000017204	rbm4.3	100	92.507	Seriola_lalandi_dorsalis
ENSLBEG00000001071	-	97	68.343	ENSSLDG00000017182	rbm4.3	96	65.680	Seriola_lalandi_dorsalis
ENSLBEG00000001071	-	100	89.337	ENSSPAG00000008062	rbm4.3	100	89.049	Stegastes_partitus
ENSLBEG00000001071	-	97	66.766	ENSSPAG00000008041	rbm4.3	81	65.179	Stegastes_partitus
ENSLBEG00000001071	-	100	86.533	ENSTRUG00000020901	rbm4.3	100	84.814	Takifugu_rubripes
ENSLBEG00000001071	-	97	63.127	ENSTRUG00000023874	rbm4.3	96	65.000	Takifugu_rubripes
ENSLBEG00000001071	-	100	85.591	ENSTNIG00000005668	rbm4.3	100	84.438	Tetraodon_nigroviridis
ENSLBEG00000001071	-	97	63.824	ENSXCOG00000005996	rbm4.3	97	64.012	Xiphophorus_couchianus
ENSLBEG00000001071	-	100	71.875	ENSXCOG00000006001	rbm4.3	100	75.000	Xiphophorus_couchianus
ENSLBEG00000001071	-	100	74.148	ENSXMAG00000021997	rbm4.3	100	75.000	Xiphophorus_maculatus
ENSLBEG00000001071	-	97	63.450	ENSXMAG00000025173	rbm4.3	99	64.000	Xiphophorus_maculatus
ENSLBEG00000001071	-	100	75.000	ENSXMAG00000011698	rbm4.3	100	76.136	Xiphophorus_maculatus