EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000001193 (Gene tree)
Gene ID: 109987063
Gene Symbol: rab42a
Alias: wu:fk59e12|zgc:73061
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 7151 bases
Position: chrFKLU01000109.1:397235-404385
Accession: 109987063
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000001500	MMR_HSR1	PF01926.23	6.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000001609	-	4986	XM_020638025	ENSLBEP00000001500	217 (aa)	XP_020493681	UPI0009B4BA00

Gene Model

Click here to download ENSLBEG00000001193's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000001193's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000001193	rab42a	75	41.718	ENSLBEG00000013463	rab15	76	41.718
ENSLBEG00000001193	rab42a	74	43.478	ENSLBEG00000027539	-	73	43.478
ENSLBEG00000001193	rab42a	97	33.333	ENSLBEG00000026930	rab6ba	87	34.973
ENSLBEG00000001193	rab42a	84	41.530	ENSLBEG00000004172	-	83	41.530
ENSLBEG00000001193	rab42a	72	38.217	ENSLBEG00000019372	rab6bb	75	38.217
ENSLBEG00000001193	rab42a	98	39.252	ENSLBEG00000026790	-	97	39.252
ENSLBEG00000001193	rab42a	80	42.775	ENSLBEG00000005791	-	80	42.775
ENSLBEG00000001193	rab42a	87	33.505	ENSLBEG00000026006	rab34a	73	33.505
ENSLBEG00000001193	rab42a	79	34.659	ENSLBEG00000018812	RAB29	91	34.659
ENSLBEG00000001193	rab42a	72	39.490	ENSLBEG00000008746	RAB41	73	39.490
ENSLBEG00000001193	rab42a	96	37.799	ENSLBEG00000026989	RAB15	74	43.396
ENSLBEG00000001193	rab42a	74	43.750	ENSLBEG00000001146	rab30	78	43.750
ENSLBEG00000001193	rab42a	76	35.976	ENSLBEG00000002516	rab5aa	71	36.420
ENSLBEG00000001193	rab42a	75	38.922	ENSLBEG00000011478	rab9b	76	38.922
ENSLBEG00000001193	rab42a	98	38.785	ENSLBEG00000019435	rab14	97	38.785
ENSLBEG00000001193	rab42a	84	39.891	ENSLBEG00000005981	-	82	39.891
ENSLBEG00000001193	rab42a	72	34.395	ENSLBEG00000003132	rras	83	33.529
ENSLBEG00000001193	rab42a	86	32.796	ENSLBEG00000014885	rheb	94	32.796
ENSLBEG00000001193	rab42a	50	42.202	ENSLBEG00000003369	-	91	42.202
ENSLBEG00000001193	rab42a	76	39.412	ENSLBEG00000020582	rab9a	83	39.412
ENSLBEG00000001193	rab42a	82	42.697	ENSLBEG00000028426	RAB1A	87	42.697
ENSLBEG00000001193	rab42a	71	37.342	ENSLBEG00000018180	si:dkey-13a21.4	77	37.342
ENSLBEG00000001193	rab42a	81	41.714	ENSLBEG00000007681	si:dkey-16l2.16	82	41.714
ENSLBEG00000001193	rab42a	76	31.928	ENSLBEG00000003644	rabl2	71	31.928
ENSLBEG00000001193	rab42a	82	42.697	ENSLBEG00000027781	rab1ab	87	42.697
ENSLBEG00000001193	rab42a	77	32.934	ENSLBEG00000019137	rhebl1	84	32.934
ENSLBEG00000001193	rab42a	71	35.065	ENSLBEG00000025705	si:ch73-116o1.2	79	34.940
ENSLBEG00000001193	rab42a	70	33.113	ENSLBEG00000028450	kras	98	30.890
ENSLBEG00000001193	rab42a	75	34.940	ENSLBEG00000017798	-	79	34.940
ENSLBEG00000001193	rab42a	79	41.279	ENSLBEG00000013756	rab12	70	41.279
ENSLBEG00000001193	rab42a	76	43.636	ENSLBEG00000002367	rab25a	78	43.452
ENSLBEG00000001193	rab42a	88	46.316	ENSLBEG00000020796	rab2a	89	46.316
ENSLBEG00000001193	rab42a	78	42.941	ENSLBEG00000016446	rab25b	81	42.941
ENSLBEG00000001193	rab42a	98	30.189	ENSLBEG00000000119	rras2	81	34.940
ENSLBEG00000001193	rab42a	75	34.940	ENSLBEG00000001796	RAB7A	79	34.940
ENSLBEG00000001193	rab42a	85	40.761	ENSLBEG00000021040	rab1ba	91	40.761
ENSLBEG00000001193	rab42a	76	35.366	ENSLBEG00000003235	rab22a	84	35.366
ENSLBEG00000001193	rab42a	70	33.113	ENSLBEG00000001905	hrasb	85	32.317
ENSLBEG00000001193	rab42a	68	41.447	ENSLBEG00000018063	-	63	41.447
ENSLBEG00000001193	rab42a	97	35.545	ENSLBEG00000003101	rab4a	91	36.923
ENSLBEG00000001193	rab42a	76	43.293	ENSLBEG00000001618	rab35b	80	43.293
ENSLBEG00000001193	rab42a	76	36.585	ENSLBEG00000010408	-	74	36.585
ENSLBEG00000001193	rab42a	72	35.443	ENSLBEG00000013176	rab23	75	35.256
ENSLBEG00000001193	rab42a	84	42.077	ENSLBEG00000026857	rab11a	84	42.077
ENSLBEG00000001193	rab42a	98	38.785	ENSLBEG00000016417	rab11al	84	42.077
ENSLBEG00000001193	rab42a	76	34.911	ENSLBEG00000006152	-	83	35.152
ENSLBEG00000001193	rab42a	76	38.824	ENSLBEG00000005128	-	75	38.824
ENSLBEG00000001193	rab42a	72	39.490	ENSLBEG00000003748	rab6a	75	39.490
ENSLBEG00000001193	rab42a	76	37.195	ENSLBEG00000004128	rab5c	74	37.195
ENSLBEG00000001193	rab42a	100	54.839	ENSLBEG00000022630	-	93	58.291
ENSLBEG00000001193	rab42a	68	33.113	ENSLBEG00000027691	RAB17	64	33.113
ENSLBEG00000001193	rab42a	70	35.714	ENSLBEG00000027819	rab34b	76	35.714
ENSLBEG00000001193	rab42a	76	40.606	ENSLBEG00000005861	rab18a	77	40.606
ENSLBEG00000001193	rab42a	78	42.604	ENSLBEG00000026779	rab13	84	42.604
ENSLBEG00000001193	rab42a	86	39.362	ENSLBEG00000026777	rab33ba	80	39.362
ENSLBEG00000001193	rab42a	100	53.917	ENSLBEG00000001313	RAB39B	93	57.286
ENSLBEG00000001193	rab42a	82	36.170	ENSLBEG00000025798	zgc:101559	80	36.170
ENSLBEG00000001193	rab42a	88	63.590	ENSLBEG00000002926	si:dkey-34d22.5	88	63.590
ENSLBEG00000001193	rab42a	77	43.713	ENSLBEG00000027226	-	70	43.713
ENSLBEG00000001193	rab42a	84	42.623	ENSLBEG00000006087	rab11ba	83	42.623
ENSLBEG00000001193	rab42a	73	39.877	ENSLBEG00000014427	rab33a	72	39.877
ENSLBEG00000001193	rab42a	84	42.077	ENSLBEG00000015248	rab11bb	83	42.077
ENSLBEG00000001193	rab42a	85	30.151	ENSLBEG00000016218	rasl11a	74	30.151
ENSLBEG00000001193	rab42a	76	41.212	ENSLBEG00000019428	rab18b	80	41.212
ENSLBEG00000001193	rab42a	76	31.325	ENSLBEG00000027628	si:cabz01085950.1	82	31.325

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000001193	rab42a	100	96.789	ENSAPOG00000009188	rab42a	100	96.789	Acanthochromis_polyacanthus
ENSLBEG00000001193	rab42a	100	97.248	ENSACIG00000003102	rab42a	100	97.248	Amphilophus_citrinellus
ENSLBEG00000001193	rab42a	100	96.789	ENSAOCG00000012921	rab42a	83	96.789	Amphiprion_ocellaris
ENSLBEG00000001193	rab42a	100	96.789	ENSAPEG00000007713	rab42a	83	96.789	Amphiprion_percula
ENSLBEG00000001193	rab42a	100	95.872	ENSATEG00000009052	rab42a	100	94.954	Anabas_testudineus
ENSLBEG00000001193	rab42a	100	95.392	ENSACLG00000007514	rab42a	100	95.392	Astatotilapia_calliptera
ENSLBEG00000001193	rab42a	100	90.783	ENSAMXG00000032729	rab42a	100	89.862	Astyanax_mexicanus
ENSLBEG00000001193	rab42a	100	94.037	ENSCSEG00000010582	rab42a	100	93.119	Cynoglossus_semilaevis
ENSLBEG00000001193	rab42a	100	46.330	ENSDARG00000102580	CU571310.1	93	49.239	Danio_rerio
ENSLBEG00000001193	rab42a	100	90.323	ENSDARG00000034215	rab42a	100	89.401	Danio_rerio
ENSLBEG00000001193	rab42a	100	89.862	ENSELUG00000010345	rab42a	100	89.862	Esox_lucius
ENSLBEG00000001193	rab42a	100	95.872	ENSFHEG00000013106	rab42a	100	95.872	Fundulus_heteroclitus
ENSLBEG00000001193	rab42a	100	95.413	ENSGAFG00000002141	rab42a	100	95.413	Gambusia_affinis
ENSLBEG00000001193	rab42a	100	95.392	ENSHBUG00000015126	rab42a	82	95.392	Haplochromis_burtoni
ENSLBEG00000001193	rab42a	100	87.558	ENSIPUG00000011376	rab42a	100	86.636	Ictalurus_punctatus
ENSLBEG00000001193	rab42a	100	95.413	ENSKMAG00000007267	rab42a	100	95.413	Kryptolebias_marmoratus
ENSLBEG00000001193	rab42a	100	65.438	ENSLACG00000012755	-	94	69.500	Latimeria_chalumnae
ENSLBEG00000001193	rab42a	100	52.294	ENSLOCG00000015825	-	99	51.835	Lepisosteus_oculatus
ENSLBEG00000001193	rab42a	100	82.488	ENSLOCG00000003453	rab42a	94	87.000	Lepisosteus_oculatus
ENSLBEG00000001193	rab42a	100	97.706	ENSMAMG00000002296	rab42a	100	97.706	Mastacembelus_armatus
ENSLBEG00000001193	rab42a	100	95.392	ENSMZEG00005012460	rab42a	82	95.392	Maylandia_zebra
ENSLBEG00000001193	rab42a	100	93.119	ENSMMOG00000014358	rab42a	100	92.202	Mola_mola
ENSLBEG00000001193	rab42a	100	96.330	ENSNBRG00000021487	rab42a	82	95.413	Neolamprologus_brichardi
ENSLBEG00000001193	rab42a	100	95.872	ENSORLG00000022335	rab42a	100	95.872	Oryzias_latipes
ENSLBEG00000001193	rab42a	100	95.872	ENSORLG00020013895	rab42a	100	95.872	Oryzias_latipes_hni
ENSLBEG00000001193	rab42a	100	95.872	ENSORLG00015004273	rab42a	100	95.872	Oryzias_latipes_hsok
ENSLBEG00000001193	rab42a	100	95.872	ENSOMEG00000020418	rab42a	100	95.872	Oryzias_melastigma
ENSLBEG00000001193	rab42a	100	77.064	ENSPKIG00000021215	-	93	81.407	Paramormyrops_kingsleyae
ENSLBEG00000001193	rab42a	94	48.293	ENSPKIG00000015234	-	93	49.485	Paramormyrops_kingsleyae
ENSLBEG00000001193	rab42a	91	96.447	ENSPMGG00000024112	rab42a	90	96.447	Periophthalmus_magnuspinnatus
ENSLBEG00000001193	rab42a	100	94.954	ENSPFOG00000004838	rab42a	82	94.495	Poecilia_formosa
ENSLBEG00000001193	rab42a	100	94.954	ENSPLAG00000005628	rab42a	100	94.954	Poecilia_latipinna
ENSLBEG00000001193	rab42a	100	94.954	ENSPMEG00000019497	rab42a	100	94.495	Poecilia_mexicana
ENSLBEG00000001193	rab42a	100	95.413	ENSPREG00000013962	rab42a	100	95.413	Poecilia_reticulata
ENSLBEG00000001193	rab42a	100	95.392	ENSPNYG00000010325	rab42a	82	95.392	Pundamilia_nyererei
ENSLBEG00000001193	rab42a	100	90.323	ENSPNAG00000016567	rab42a	100	89.401	Pygocentrus_nattereri
ENSLBEG00000001193	rab42a	100	84.793	ENSSFOG00015020732	rab42a	100	84.332	Scleropages_formosus
ENSLBEG00000001193	rab42a	100	46.789	ENSSFOG00015016000	-	97	46.789	Scleropages_formosus
ENSLBEG00000001193	rab42a	100	95.413	ENSSMAG00000020311	rab42a	100	95.413	Scophthalmus_maximus
ENSLBEG00000001193	rab42a	100	96.789	ENSSDUG00000011851	rab42a	100	96.789	Seriola_dumerili
ENSLBEG00000001193	rab42a	100	96.789	ENSSLDG00000020354	rab42a	100	96.789	Seriola_lalandi_dorsalis
ENSLBEG00000001193	rab42a	100	98.165	ENSSPAG00000016167	rab42a	100	98.165	Stegastes_partitus
ENSLBEG00000001193	rab42a	100	96.789	ENSTRUG00000010224	rab42a	100	96.789	Takifugu_rubripes
ENSLBEG00000001193	rab42a	100	94.954	ENSXCOG00000003428	rab42a	100	94.954	Xiphophorus_couchianus
ENSLBEG00000001193	rab42a	100	94.954	ENSXMAG00000028376	rab42a	100	94.954	Xiphophorus_maculatus