EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000001998 (Gene tree)
Gene ID: 109995731
Gene Symbol: arf1
Alias: wu:fb33e02|wu:fb78h01
Full Name: ADP-ribosylation factor 1-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 3873 bases
Position: chrFKLU01000337.1:545697-549569
Accession: 109995731
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000002543	MMR_HSR1	PF01926.23	1.5e-05	1	1
ENSLBEP00000002554	MMR_HSR1	PF01926.23	1.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000002679	-	1557	-	ENSLBEP00000002543	177 (aa)	-	UPI0009B31E73
ENSLBET00000002690	-	783	XM_020649556	ENSLBEP00000002554	177 (aa)	XP_020505212	UPI0009B31E73

Gene Model

Click here to download ENSLBEG00000001998's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000001998's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000001998	arf1	87	44.025	ENSLBEG00000021116	arl14	75	44.025
ENSLBEG00000001998	arf1	93	88.485	ENSLBEG00000023263	-	91	88.485
ENSLBEG00000001998	arf1	94	47.305	ENSLBEG00000016494	arl2	90	47.305
ENSLBEG00000001998	arf1	92	41.818	ENSLBEG00000027842	-	81	41.818
ENSLBEG00000001998	arf1	85	44.371	ENSLBEG00000015748	arl11	85	44.371
ENSLBEG00000001998	arf1	98	49.143	ENSLBEG00000017173	arl8	98	49.143
ENSLBEG00000001998	arf1	100	48.603	ENSLBEG00000016471	arl5a	100	48.603
ENSLBEG00000001998	arf1	100	88.889	ENSLBEG00000012046	-	99	88.889
ENSLBEG00000001998	arf1	63	35.398	ENSLBEG00000019016	arl8bb	68	35.644
ENSLBEG00000001998	arf1	100	45.355	ENSLBEG00000012677	arl4cb	95	45.355
ENSLBEG00000001998	arf1	100	88.889	ENSLBEG00000009272	arf2b	99	88.889
ENSLBEG00000001998	arf1	87	43.750	ENSLBEG00000011152	arl4d	80	43.750
ENSLBEG00000001998	arf1	98	54.598	ENSLBEG00000000991	arl1	99	54.598
ENSLBEG00000001998	arf1	90	31.395	ENSLBEG00000016945	-	87	31.395
ENSLBEG00000001998	arf1	96	31.694	ENSLBEG00000004752	arfrp1	89	31.694
ENSLBEG00000001998	arf1	100	88.889	ENSLBEG00000018992	arf3b	99	88.889
ENSLBEG00000001998	arf1	92	45.029	ENSLBEG00000013638	arl4aa	93	45.029
ENSLBEG00000001998	arf1	92	32.000	ENSLBEG00000001114	sar1ab	88	32.000
ENSLBEG00000001998	arf1	99	32.386	ENSLBEG00000022310	arl8ba	80	32.386
ENSLBEG00000001998	arf1	100	81.356	ENSLBEG00000026532	arf5	98	81.356
ENSLBEG00000001998	arf1	94	42.771	ENSLBEG00000027806	arl3l2	89	42.771
ENSLBEG00000001998	arf1	99	40.884	ENSLBEG00000010881	ARL6	95	40.884
ENSLBEG00000001998	arf1	97	43.931	ENSLBEG00000025929	arl3	99	43.931
ENSLBEG00000001998	arf1	94	44.578	ENSLBEG00000017331	-	95	44.578
ENSLBEG00000001998	arf1	92	46.296	ENSLBEG00000006177	arl5c	78	46.296
ENSLBEG00000001998	arf1	92	69.939	ENSLBEG00000024782	ARF6	90	69.939
ENSLBEG00000001998	arf1	100	78.531	ENSLBEG00000012002	-	97	78.531
ENSLBEG00000001998	arf1	94	71.257	ENSLBEG00000027205	-	94	71.257
ENSLBEG00000001998	arf1	100	45.109	ENSLBEG00000010335	-	94	45.109

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000001998	arf1	99	89.944	ENSACIG00000012192	-	99	89.944	Amphilophus_citrinellus
ENSLBEG00000001998	arf1	84	88.079	ENSAOCG00000001275	-	88	88.079	Amphiprion_ocellaris
ENSLBEG00000001998	arf1	99	89.326	ENSAPEG00000016909	-	99	89.326	Amphiprion_percula
ENSLBEG00000001998	arf1	99	89.944	ENSATEG00000003174	-	99	89.944	Anabas_testudineus
ENSLBEG00000001998	arf1	99	89.944	ENSACLG00000004123	-	99	89.944	Astatotilapia_calliptera
ENSLBEG00000001998	arf1	100	90.503	ENSAMXG00000019845	arf1	99	90.503	Astyanax_mexicanus
ENSLBEG00000001998	arf1	99	89.385	ENSCVAG00000013374	-	99	89.385	Cyprinodon_variegatus
ENSLBEG00000001998	arf1	100	90.503	ENSDARG00000009484	arf1	99	90.503	Danio_rerio
ENSLBEG00000001998	arf1	100	90.503	ENSELUG00000022533	arf1	79	90.503	Esox_lucius
ENSLBEG00000001998	arf1	99	88.202	ENSFHEG00000005859	-	99	88.202	Fundulus_heteroclitus
ENSLBEG00000001998	arf1	97	89.017	ENSGMOG00000000429	arf1	95	89.017	Gadus_morhua
ENSLBEG00000001998	arf1	99	89.385	ENSGAFG00000018151	-	99	89.385	Gambusia_affinis
ENSLBEG00000001998	arf1	93	86.585	ENSGACG00000014195	-	89	86.585	Gasterosteus_aculeatus
ENSLBEG00000001998	arf1	99	89.944	ENSHBUG00000002636	-	99	89.944	Haplochromis_burtoni
ENSLBEG00000001998	arf1	100	91.061	ENSIPUG00000006311	arf1	99	91.061	Ictalurus_punctatus
ENSLBEG00000001998	arf1	99	89.944	ENSKMAG00000018315	-	99	89.944	Kryptolebias_marmoratus
ENSLBEG00000001998	arf1	99	89.944	ENSMAMG00000001553	-	99	89.944	Mastacembelus_armatus
ENSLBEG00000001998	arf1	99	89.944	ENSMZEG00005022594	-	99	89.944	Maylandia_zebra
ENSLBEG00000001998	arf1	99	90.503	ENSMALG00000004269	-	99	90.503	Monopterus_albus
ENSLBEG00000001998	arf1	99	89.944	ENSNBRG00000016455	-	99	89.944	Neolamprologus_brichardi
ENSLBEG00000001998	arf1	99	89.944	ENSONIG00000001286	-	99	89.944	Oreochromis_niloticus
ENSLBEG00000001998	arf1	99	88.202	ENSORLG00000023270	-	99	88.202	Oryzias_latipes
ENSLBEG00000001998	arf1	99	87.640	ENSORLG00020006712	-	99	87.640	Oryzias_latipes_hni
ENSLBEG00000001998	arf1	99	88.202	ENSORLG00015019836	-	99	88.202	Oryzias_latipes_hsok
ENSLBEG00000001998	arf1	99	88.202	ENSOMEG00000023784	-	99	88.202	Oryzias_melastigma
ENSLBEG00000001998	arf1	99	88.764	ENSPMGG00000014174	arf1	99	88.764	Periophthalmus_magnuspinnatus
ENSLBEG00000001998	arf1	100	89.385	ENSPMAG00000002035	arf1	99	89.385	Petromyzon_marinus
ENSLBEG00000001998	arf1	99	89.385	ENSPFOG00000014787	-	99	89.385	Poecilia_formosa
ENSLBEG00000001998	arf1	99	89.385	ENSPLAG00000001041	-	99	89.385	Poecilia_latipinna
ENSLBEG00000001998	arf1	99	89.385	ENSPMEG00000024077	-	99	89.385	Poecilia_mexicana
ENSLBEG00000001998	arf1	99	89.385	ENSPREG00000009009	-	99	89.385	Poecilia_reticulata
ENSLBEG00000001998	arf1	99	89.944	ENSPNYG00000009472	-	99	89.944	Pundamilia_nyererei
ENSLBEG00000001998	arf1	94	93.373	ENSPNAG00000000098	arf1	92	93.373	Pygocentrus_nattereri
ENSLBEG00000001998	arf1	98	75.287	YDL137W	-	96	75.287	Saccharomyces_cerevisiae
ENSLBEG00000001998	arf1	99	74.860	YDL192W	-	99	74.860	Saccharomyces_cerevisiae
ENSLBEG00000001998	arf1	99	86.592	ENSSMAG00000006125	-	99	86.592	Scophthalmus_maximus
ENSLBEG00000001998	arf1	99	89.385	ENSSDUG00000017356	-	99	89.385	Seriola_dumerili
ENSLBEG00000001998	arf1	99	89.385	ENSSLDG00000008504	-	99	89.385	Seriola_lalandi_dorsalis
ENSLBEG00000001998	arf1	99	89.944	ENSSPAG00000011431	-	99	89.944	Stegastes_partitus
ENSLBEG00000001998	arf1	99	88.827	ENSTRUG00000019870	-	99	88.827	Takifugu_rubripes
ENSLBEG00000001998	arf1	99	87.709	ENSTNIG00000011685	-	99	87.709	Tetraodon_nigroviridis
ENSLBEG00000001998	arf1	99	89.385	ENSXCOG00000016687	-	97	89.385	Xiphophorus_couchianus
ENSLBEG00000001998	arf1	99	89.385	ENSXMAG00000009193	-	99	89.385	Xiphophorus_maculatus