EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000002145 (Gene tree)
Gene ID: 109988829
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 22656 bases
Position: chrFKLU01000146.1:66077-88732
Accession: 109988829
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000002840	EST1	PF10374.9	4e-24	1	1
ENSLBEP00000002806	EST1	PF10374.9	4.7e-24	1	1
ENSLBEP00000002806	EST1_DNA_bind	PF10373.9	7e-40	1	1
ENSLBEP00000002840	EST1_DNA_bind	PF10373.9	2.5e-39	1	1
ENSLBEP00000002840	PIN_4	PF13638.6	4.6e-07	1	1
ENSLBEP00000002806	PIN_4	PF13638.6	6.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000003002	-	2988	-	ENSLBEP00000002840	995 (aa)	-	-
ENSLBET00000002967	-	6608	XM_020640414	ENSLBEP00000002806	1121 (aa)	XP_020496070	UPI0009B48FD3

Gene Model

Click here to download ENSLBEG00000002145's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000002145's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000002145	smg5	92	78.302	ENSG00000198952	SMG5	99	66.152	Homo_sapiens
ENSLBEG00000002145	smg5	100	93.079	ENSAPOG00000019690	smg5	100	92.369	Acanthochromis_polyacanthus
ENSLBEG00000002145	smg5	98	63.870	ENSAMEG00000014458	SMG5	100	64.665	Ailuropoda_melanoleuca
ENSLBEG00000002145	smg5	99	87.271	ENSACIG00000001353	smg5	99	87.078	Amphilophus_citrinellus
ENSLBEG00000002145	smg5	100	92.787	ENSAOCG00000019483	smg5	100	92.431	Amphiprion_ocellaris
ENSLBEG00000002145	smg5	100	92.876	ENSAPEG00000022949	smg5	100	92.520	Amphiprion_percula
ENSLBEG00000002145	smg5	100	89.067	ENSATEG00000005348	smg5	100	88.968	Anabas_testudineus
ENSLBEG00000002145	smg5	98	64.176	ENSAPLG00000010263	SMG5	100	64.464	Anas_platyrhynchos
ENSLBEG00000002145	smg5	99	66.473	ENSANAG00000032899	SMG5	99	66.313	Aotus_nancymaae
ENSLBEG00000002145	smg5	100	89.086	ENSACLG00000009311	smg5	100	88.997	Astatotilapia_calliptera
ENSLBEG00000002145	smg5	100	79.857	ENSAMXG00000024616	smg5	100	80.053	Astyanax_mexicanus
ENSLBEG00000002145	smg5	91	50.367	ENSBTAG00000021747	-	99	40.000	Bos_taurus
ENSLBEG00000002145	smg5	99	65.764	ENSBTAG00000009435	SMG5	99	65.830	Bos_taurus
ENSLBEG00000002145	smg5	99	66.570	ENSCJAG00000005684	SMG5	99	66.313	Callithrix_jacchus
ENSLBEG00000002145	smg5	99	65.015	ENSCAFG00000016839	SMG5	99	65.411	Canis_familiaris
ENSLBEG00000002145	smg5	99	65.015	ENSCAFG00020006061	SMG5	99	65.411	Canis_lupus_dingo
ENSLBEG00000002145	smg5	89	50.623	ENSCHIG00000006323	-	99	39.569	Capra_hircus
ENSLBEG00000002145	smg5	93	78.923	ENSCHIG00000007709	SMG5	99	65.830	Capra_hircus
ENSLBEG00000002145	smg5	99	66.409	ENSTSYG00000004099	SMG5	99	66.056	Carlito_syrichta
ENSLBEG00000002145	smg5	94	50.612	ENSCAPG00000003631	SMG5	100	51.682	Cavia_aperea
ENSLBEG00000002145	smg5	99	66.120	ENSCPOG00000015696	SMG5	99	66.699	Cavia_porcellus
ENSLBEG00000002145	smg5	99	66.248	ENSCCAG00000027409	SMG5	99	66.313	Cebus_capucinus
ENSLBEG00000002145	smg5	99	66.441	ENSCATG00000030539	SMG5	99	66.409	Cercocebus_atys
ENSLBEG00000002145	smg5	99	66.087	ENSCLAG00000003983	SMG5	99	66.699	Chinchilla_lanigera
ENSLBEG00000002145	smg5	99	66.441	ENSCSAG00000002120	SMG5	99	66.409	Chlorocebus_sabaeus
ENSLBEG00000002145	smg5	53	76.173	ENSCHOG00000008741	-	57	76.173	Choloepus_hoffmanni
ENSLBEG00000002145	smg5	93	64.350	ENSCPBG00000025848	SMG5	100	64.653	Chrysemys_picta_bellii
ENSLBEG00000002145	smg5	92	33.438	ENSCING00000008706	-	98	33.299	Ciona_intestinalis
ENSLBEG00000002145	smg5	99	63.733	ENSCANG00000029208	SMG5	99	63.900	Colobus_angolensis_palliatus
ENSLBEG00000002145	smg5	99	66.249	ENSCGRG00001006336	Smg5	99	65.130	Cricetulus_griseus_chok1gshd
ENSLBEG00000002145	smg5	56	41.522	ENSCGRG00001000584	-	74	50.122	Cricetulus_griseus_chok1gshd
ENSLBEG00000002145	smg5	98	66.143	ENSCGRG00000005111	Smg5	100	64.971	Cricetulus_griseus_crigri
ENSLBEG00000002145	smg5	100	86.465	ENSCSEG00000014220	smg5	100	85.752	Cynoglossus_semilaevis
ENSLBEG00000002145	smg5	100	79.245	ENSCVAG00000000529	smg5	100	79.245	Cyprinodon_variegatus
ENSLBEG00000002145	smg5	100	78.477	ENSDARG00000041481	smg5	100	77.670	Danio_rerio
ENSLBEG00000002145	smg5	91	32.937	ENSDNOG00000039862	-	99	32.220	Dasypus_novemcinctus
ENSLBEG00000002145	smg5	88	79.045	ENSDNOG00000000051	SMG5	99	62.949	Dasypus_novemcinctus
ENSLBEG00000002145	smg5	99	66.023	ENSDORG00000010382	Smg5	99	65.481	Dipodomys_ordii
ENSLBEG00000002145	smg5	74	85.437	ENSETEG00000010336	SMG5	81	85.437	Echinops_telfairi
ENSLBEG00000002145	smg5	90	45.923	ENSEBUG00000003739	smg5	99	47.059	Eptatretus_burgeri
ENSLBEG00000002145	smg5	99	66.184	ENSEASG00005019122	SMG5	99	65.667	Equus_asinus_asinus
ENSLBEG00000002145	smg5	99	65.990	ENSECAG00000001389	SMG5	99	65.571	Equus_caballus
ENSLBEG00000002145	smg5	75	79.379	ENSEEUG00000012690	SMG5	75	78.187	Erinaceus_europaeus
ENSLBEG00000002145	smg5	100	81.899	ENSELUG00000012585	smg5	100	81.045	Esox_lucius
ENSLBEG00000002145	smg5	99	65.336	ENSFCAG00000011783	SMG5	99	65.598	Felis_catus
ENSLBEG00000002145	smg5	60	66.828	ENSFALG00000001166	-	99	66.181	Ficedula_albicollis
ENSLBEG00000002145	smg5	97	65.582	ENSFDAG00000017388	SMG5	100	65.582	Fukomys_damarensis
ENSLBEG00000002145	smg5	86	90.476	ENSFHEG00000013939	smg5	94	90.476	Fundulus_heteroclitus
ENSLBEG00000002145	smg5	100	78.934	ENSGMOG00000007310	smg5	100	79.021	Gadus_morhua
ENSLBEG00000002145	smg5	99	64.867	ENSGALG00000029918	-	99	64.380	Gallus_gallus
ENSLBEG00000002145	smg5	93	90.415	ENSGAFG00000021691	smg5	99	90.415	Gambusia_affinis
ENSLBEG00000002145	smg5	100	87.600	ENSGACG00000013142	smg5	100	86.271	Gasterosteus_aculeatus
ENSLBEG00000002145	smg5	99	64.546	ENSGAGG00000016131	SMG5	99	65.359	Gopherus_agassizii
ENSLBEG00000002145	smg5	92	78.302	ENSGGOG00000010932	SMG5	99	66.216	Gorilla_gorilla
ENSLBEG00000002145	smg5	100	89.432	ENSHBUG00000008654	smg5	100	89.067	Haplochromis_burtoni
ENSLBEG00000002145	smg5	99	65.767	ENSHGLG00000019152	SMG5	99	65.927	Heterocephalus_glaber_female
ENSLBEG00000002145	smg5	89	67.171	ENSHGLG00100015948	SMG5	99	67.351	Heterocephalus_glaber_male
ENSLBEG00000002145	smg5	88	84.444	ENSHCOG00000010229	smg5	93	84.691	Hippocampus_comes
ENSLBEG00000002145	smg5	100	77.906	ENSIPUG00000006624	Smg5	100	77.728	Ictalurus_punctatus
ENSLBEG00000002145	smg5	99	65.828	ENSSTOG00000001780	SMG5	99	66.313	Ictidomys_tridecemlineatus
ENSLBEG00000002145	smg5	99	65.865	ENSJJAG00000022763	Smg5	99	65.484	Jaculus_jaculus
ENSLBEG00000002145	smg5	100	89.591	ENSKMAG00000014586	smg5	100	89.413	Kryptolebias_marmoratus
ENSLBEG00000002145	smg5	99	58.177	ENSLACG00000010521	SMG5	99	58.365	Latimeria_chalumnae
ENSLBEG00000002145	smg5	96	87.923	ENSLOCG00000008380	smg5	99	72.880	Lepisosteus_oculatus
ENSLBEG00000002145	smg5	100	65.188	ENSLAFG00000006241	SMG5	100	65.092	Loxodonta_africana
ENSLBEG00000002145	smg5	99	66.441	ENSMFAG00000045357	SMG5	99	66.409	Macaca_fascicularis
ENSLBEG00000002145	smg5	93	78.538	ENSMMUG00000000090	SMG5	99	67.090	Macaca_mulatta
ENSLBEG00000002145	smg5	99	66.441	ENSMNEG00000044425	SMG5	99	66.409	Macaca_nemestrina
ENSLBEG00000002145	smg5	99	61.079	ENSMLEG00000041192	SMG5	99	61.058	Mandrillus_leucophaeus
ENSLBEG00000002145	smg5	100	89.324	ENSMAMG00000010683	smg5	100	89.146	Mastacembelus_armatus
ENSLBEG00000002145	smg5	99	84.593	ENSMZEG00005015815	smg5	99	84.884	Maylandia_zebra
ENSLBEG00000002145	smg5	61	81.385	ENSMZEG00005016543	smg5	100	81.692	Maylandia_zebra
ENSLBEG00000002145	smg5	99	65.959	ENSMAUG00000010381	Smg5	99	65.096	Mesocricetus_auratus
ENSLBEG00000002145	smg5	55	40.614	ENSMAUG00000000043	-	68	50.382	Mesocricetus_auratus
ENSLBEG00000002145	smg5	99	66.344	ENSMICG00000002257	SMG5	99	65.924	Microcebus_murinus
ENSLBEG00000002145	smg5	99	65.511	ENSMOCG00000016590	Smg5	99	64.909	Microtus_ochrogaster
ENSLBEG00000002145	smg5	50	44.767	ENSMOCG00000008423	-	73	49.299	Microtus_ochrogaster
ENSLBEG00000002145	smg5	100	85.169	ENSMMOG00000017199	smg5	100	85.258	Mola_mola
ENSLBEG00000002145	smg5	86	66.667	ENSMODG00000016901	SMG5	98	66.186	Monodelphis_domestica
ENSLBEG00000002145	smg5	83	34.419	ENSMODG00000004532	-	89	34.186	Monodelphis_domestica
ENSLBEG00000002145	smg5	82	32.701	ENSMODG00000010675	-	90	33.933	Monodelphis_domestica
ENSLBEG00000002145	smg5	74	34.158	ENSMODG00000004735	-	88	34.158	Monodelphis_domestica
ENSLBEG00000002145	smg5	97	30.000	ENSMODG00000004511	-	83	33.738	Monodelphis_domestica
ENSLBEG00000002145	smg5	100	88.424	ENSMALG00000010375	smg5	100	88.424	Monopterus_albus
ENSLBEG00000002145	smg5	99	66.216	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSLBEG00000002145	smg5	99	66.249	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSLBEG00000002145	smg5	99	66.025	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSLBEG00000002145	smg5	99	66.152	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSLBEG00000002145	smg5	93	64.041	ENSMPUG00000004546	SMG5	100	64.330	Mustela_putorius_furo
ENSLBEG00000002145	smg5	99	66.250	ENSMLUG00000008518	SMG5	99	65.990	Myotis_lucifugus
ENSLBEG00000002145	smg5	99	65.537	ENSNGAG00000020706	Smg5	99	65.188	Nannospalax_galili
ENSLBEG00000002145	smg5	99	39.070	ENSNGAG00000012101	-	99	38.298	Nannospalax_galili
ENSLBEG00000002145	smg5	95	86.264	ENSNBRG00000004332	smg5	97	86.368	Neolamprologus_brichardi
ENSLBEG00000002145	smg5	92	78.538	ENSNLEG00000012439	SMG5	99	66.313	Nomascus_leucogenys
ENSLBEG00000002145	smg5	99	64.894	ENSMEUG00000012834	SMG5	99	64.485	Notamacropus_eugenii
ENSLBEG00000002145	smg5	99	65.736	ENSOPRG00000009152	SMG5	99	65.830	Ochotona_princeps
ENSLBEG00000002145	smg5	99	66.442	ENSODEG00000012237	SMG5	99	66.442	Octodon_degus
ENSLBEG00000002145	smg5	100	89.254	ENSONIG00000008632	smg5	100	88.899	Oreochromis_niloticus
ENSLBEG00000002145	smg5	88	36.543	ENSOCUG00000023338	-	99	36.433	Oryctolagus_cuniculus
ENSLBEG00000002145	smg5	98	65.320	ENSOCUG00000012886	SMG5	100	66.010	Oryctolagus_cuniculus
ENSLBEG00000002145	smg5	100	83.882	ENSORLG00000016239	smg5	100	84.684	Oryzias_latipes
ENSLBEG00000002145	smg5	100	84.595	ENSORLG00020013127	smg5	100	85.396	Oryzias_latipes_hni
ENSLBEG00000002145	smg5	100	84.506	ENSORLG00015019014	smg5	100	85.485	Oryzias_latipes_hsok
ENSLBEG00000002145	smg5	84	84.183	ENSOMEG00000021330	smg5	93	86.207	Oryzias_melastigma
ENSLBEG00000002145	smg5	99	64.660	ENSOGAG00000004966	SMG5	99	65.440	Otolemur_garnettii
ENSLBEG00000002145	smg5	93	78.923	ENSOARG00000005778	SMG5	99	65.830	Ovis_aries
ENSLBEG00000002145	smg5	90	50.852	ENSOARG00000011963	-	99	39.517	Ovis_aries
ENSLBEG00000002145	smg5	92	78.066	ENSPPAG00000011996	SMG5	99	66.056	Pan_paniscus
ENSLBEG00000002145	smg5	98	65.114	ENSPPRG00000011901	SMG5	100	65.350	Panthera_pardus
ENSLBEG00000002145	smg5	93	64.369	ENSPTIG00000007892	SMG5	95	64.520	Panthera_tigris_altaica
ENSLBEG00000002145	smg5	92	78.066	ENSPTRG00000049282	-	99	66.056	Pan_troglodytes
ENSLBEG00000002145	smg5	92	78.066	ENSPTRG00000023925	SMG5	99	66.056	Pan_troglodytes
ENSLBEG00000002145	smg5	99	66.441	ENSPANG00000011201	SMG5	99	66.409	Papio_anubis
ENSLBEG00000002145	smg5	100	77.916	ENSPKIG00000009402	smg5	100	76.908	Paramormyrops_kingsleyae
ENSLBEG00000002145	smg5	98	66.246	ENSPSIG00000015198	SMG5	100	66.408	Pelodiscus_sinensis
ENSLBEG00000002145	smg5	100	73.310	ENSPMGG00000010465	smg5	100	72.267	Periophthalmus_magnuspinnatus
ENSLBEG00000002145	smg5	99	66.345	ENSPEMG00000001819	Smg5	99	65.731	Peromyscus_maniculatus_bairdii
ENSLBEG00000002145	smg5	57	42.660	ENSPEMG00000010022	-	73	47.917	Peromyscus_maniculatus_bairdii
ENSLBEG00000002145	smg5	85	62.808	ENSPMAG00000000410	smg5	99	50.427	Petromyzon_marinus
ENSLBEG00000002145	smg5	99	66.117	ENSPCIG00000018938	SMG5	99	65.507	Phascolarctos_cinereus
ENSLBEG00000002145	smg5	100	87.255	ENSPFOG00000010191	smg5	100	87.077	Poecilia_formosa
ENSLBEG00000002145	smg5	100	86.898	ENSPLAG00000009332	smg5	100	86.988	Poecilia_latipinna
ENSLBEG00000002145	smg5	100	87.166	ENSPMEG00000014105	smg5	100	86.988	Poecilia_mexicana
ENSLBEG00000002145	smg5	100	87.255	ENSPREG00000017713	smg5	100	87.701	Poecilia_reticulata
ENSLBEG00000002145	smg5	92	78.302	ENSPPYG00000000723	SMG5	99	66.313	Pongo_abelii
ENSLBEG00000002145	smg5	77	80.556	ENSPCAG00000008412	SMG5	81	80.556	Procavia_capensis
ENSLBEG00000002145	smg5	99	66.505	ENSPCOG00000004741	SMG5	99	66.151	Propithecus_coquereli
ENSLBEG00000002145	smg5	99	58.671	ENSPVAG00000016748	SMG5	99	58.841	Pteropus_vampyrus
ENSLBEG00000002145	smg5	100	88.938	ENSPNYG00000013397	smg5	100	88.574	Pundamilia_nyererei
ENSLBEG00000002145	smg5	100	78.831	ENSPNAG00000028363	smg5	100	78.635	Pygocentrus_nattereri
ENSLBEG00000002145	smg5	99	66.120	ENSRNOG00000019590	Smg5	99	64.904	Rattus_norvegicus
ENSLBEG00000002145	smg5	99	66.441	ENSRBIG00000027428	SMG5	99	66.506	Rhinopithecus_bieti
ENSLBEG00000002145	smg5	99	66.344	ENSRROG00000030035	SMG5	99	66.409	Rhinopithecus_roxellana
ENSLBEG00000002145	smg5	99	66.344	ENSSBOG00000033339	SMG5	99	66.409	Saimiri_boliviensis_boliviensis
ENSLBEG00000002145	smg5	78	37.084	ENSSHAG00000000561	-	88	37.084	Sarcophilus_harrisii
ENSLBEG00000002145	smg5	98	65.358	ENSSHAG00000014163	SMG5	100	64.551	Sarcophilus_harrisii
ENSLBEG00000002145	smg5	99	32.115	ENSSHAG00000009572	-	79	41.176	Sarcophilus_harrisii
ENSLBEG00000002145	smg5	66	34.091	ENSSHAG00000000935	-	83	36.320	Sarcophilus_harrisii
ENSLBEG00000002145	smg5	100	77.788	ENSSFOG00015024175	smg5	100	77.992	Scleropages_formosus
ENSLBEG00000002145	smg5	100	89.858	ENSSMAG00000013059	smg5	100	89.502	Scophthalmus_maximus
ENSLBEG00000002145	smg5	100	91.770	ENSSDUG00000007122	smg5	100	90.796	Seriola_dumerili
ENSLBEG00000002145	smg5	100	92.096	ENSSLDG00000011418	smg5	100	91.563	Seriola_lalandi_dorsalis
ENSLBEG00000002145	smg5	89	59.263	ENSSARG00000012484	SMG5	94	70.144	Sorex_araneus
ENSLBEG00000002145	smg5	93	63.690	ENSSPUG00000002260	SMG5	100	63.654	Sphenodon_punctatus
ENSLBEG00000002145	smg5	100	91.755	ENSSPAG00000014266	smg5	100	91.223	Stegastes_partitus
ENSLBEG00000002145	smg5	91	60.519	ENSSSCG00000039308	-	99	52.819	Sus_scrofa
ENSLBEG00000002145	smg5	99	66.248	ENSSSCG00000006490	-	100	65.570	Sus_scrofa
ENSLBEG00000002145	smg5	99	67.406	ENSTGUG00000003748	-	99	66.699	Taeniopygia_guttata
ENSLBEG00000002145	smg5	100	81.045	ENSTRUG00000012580	smg5	100	80.514	Takifugu_rubripes
ENSLBEG00000002145	smg5	100	81.289	ENSTNIG00000010303	smg5	100	80.671	Tetraodon_nigroviridis
ENSLBEG00000002145	smg5	59	84.729	ENSTBEG00000002777	SMG5	58	84.729	Tupaia_belangeri
ENSLBEG00000002145	smg5	99	61.992	ENSTTRG00000001401	SMG5	99	61.969	Tursiops_truncatus
ENSLBEG00000002145	smg5	92	76.850	ENSUAMG00000013721	SMG5	99	65.209	Ursus_americanus
ENSLBEG00000002145	smg5	91	75.000	ENSUMAG00000018041	SMG5	94	73.986	Ursus_maritimus
ENSLBEG00000002145	smg5	91	68.571	ENSVPAG00000009446	SMG5	99	57.890	Vicugna_pacos
ENSLBEG00000002145	smg5	99	65.112	ENSVVUG00000005887	SMG5	99	65.537	Vulpes_vulpes
ENSLBEG00000002145	smg5	76	57.753	ENSXETG00000033791	SMG5	99	56.304	Xenopus_tropicalis
ENSLBEG00000002145	smg5	92	91.351	ENSXCOG00000004379	smg5	99	92.308	Xiphophorus_couchianus
ENSLBEG00000002145	smg5	100	86.453	ENSXMAG00000013499	smg5	100	86.898	Xiphophorus_maculatus