EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000002184 (Gene tree)
Gene ID: 109991729
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 14743 bases
Position: chrFKLU01000212.1:329410-344152
Accession: 109991729
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000002772	EST1	PF10374.9	4.3e-13	1	1
ENSLBEP00000002772	EST1_DNA_bind	PF10373.9	5.6e-60	1	1
ENSLBEP00000002772	PIN_4	PF13638.6	1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000002931	-	6970	XM_020644081	ENSLBEP00000002772	1666 (aa)	XP_020499737	UPI0009B3EE52

Gene Model

Click here to download ENSLBEG00000002184's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000002184's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000002184	smg6	74	54.060	ENSG00000070366	SMG6	100	56.569	Homo_sapiens
ENSLBEG00000002184	smg6	100	77.419	ENSAPOG00000019448	smg6	100	77.897	Acanthochromis_polyacanthus
ENSLBEG00000002184	smg6	93	74.742	ENSACIG00000012997	smg6	100	74.356	Amphilophus_citrinellus
ENSLBEG00000002184	smg6	100	78.004	ENSAOCG00000002630	smg6	100	78.375	Amphiprion_ocellaris
ENSLBEG00000002184	smg6	100	77.645	ENSAPEG00000019101	smg6	100	78.017	Amphiprion_percula
ENSLBEG00000002184	smg6	100	75.943	ENSATEG00000006483	smg6	100	75.943	Anabas_testudineus
ENSLBEG00000002184	smg6	63	49.126	ENSACAG00000011783	SMG6	84	49.679	Anolis_carolinensis
ENSLBEG00000002184	smg6	76	53.184	ENSANAG00000035760	SMG6	86	52.941	Aotus_nancymaae
ENSLBEG00000002184	smg6	100	74.791	ENSACLG00000005288	smg6	100	76.224	Astatotilapia_calliptera
ENSLBEG00000002184	smg6	78	68.999	ENSAMXG00000017326	smg6	88	68.195	Astyanax_mexicanus
ENSLBEG00000002184	smg6	75	53.729	ENSBTAG00000000267	SMG6	85	53.544	Bos_taurus
ENSLBEG00000002184	smg6	74	54.574	ENSCAFG00000019260	SMG6	83	54.248	Canis_familiaris
ENSLBEG00000002184	smg6	74	54.574	ENSCAFG00020009770	SMG6	83	54.248	Canis_lupus_dingo
ENSLBEG00000002184	smg6	75	53.740	ENSCHIG00000021998	SMG6	85	53.544	Capra_hircus
ENSLBEG00000002184	smg6	76	52.959	ENSTSYG00000003406	SMG6	100	56.080	Carlito_syrichta
ENSLBEG00000002184	smg6	70	50.321	ENSCAPG00000016197	SMG6	87	49.892	Cavia_aperea
ENSLBEG00000002184	smg6	76	52.445	ENSCPOG00000014878	SMG6	88	57.078	Cavia_porcellus
ENSLBEG00000002184	smg6	76	52.994	ENSCCAG00000035801	SMG6	86	53.172	Cebus_capucinus
ENSLBEG00000002184	smg6	76	52.553	ENSCLAG00000006748	SMG6	88	52.363	Chinchilla_lanigera
ENSLBEG00000002184	smg6	75	53.036	ENSCPBG00000020369	SMG6	84	53.082	Chrysemys_picta_bellii
ENSLBEG00000002184	smg6	76	53.104	ENSCANG00000031764	SMG6	100	56.752	Colobus_angolensis_palliatus
ENSLBEG00000002184	smg6	73	48.908	ENSCGRG00000007782	Smg6	91	47.285	Cricetulus_griseus_crigri
ENSLBEG00000002184	smg6	100	69.604	ENSCSEG00000012757	smg6	100	70.084	Cynoglossus_semilaevis
ENSLBEG00000002184	smg6	100	67.443	ENSCVAG00000012789	smg6	100	67.503	Cyprinodon_variegatus
ENSLBEG00000002184	smg6	100	55.360	ENSDARG00000100481	smg6	100	54.862	Danio_rerio
ENSLBEG00000002184	smg6	75	49.545	ENSDORG00000016614	Smg6	81	59.024	Dipodomys_ordii
ENSLBEG00000002184	smg6	69	85.000	ENSETEG00000016790	SMG6	79	85.000	Echinops_telfairi
ENSLBEG00000002184	smg6	58	47.748	ENSEBUG00000005059	smg6	61	47.548	Eptatretus_burgeri
ENSLBEG00000002184	smg6	75	46.037	ENSEEUG00000003493	SMG6	85	46.172	Erinaceus_europaeus
ENSLBEG00000002184	smg6	90	73.737	ENSELUG00000005934	smg6	89	69.784	Esox_lucius
ENSLBEG00000002184	smg6	76	53.507	ENSFCAG00000028817	SMG6	87	53.671	Felis_catus
ENSLBEG00000002184	smg6	77	53.569	ENSFALG00000006538	SMG6	86	53.704	Ficedula_albicollis
ENSLBEG00000002184	smg6	86	48.449	ENSFDAG00000015106	SMG6	81	58.049	Fukomys_damarensis
ENSLBEG00000002184	smg6	100	68.198	ENSFHEG00000013282	smg6	100	68.239	Fundulus_heteroclitus
ENSLBEG00000002184	smg6	74	54.134	ENSGALG00000003108	SMG6	81	54.075	Gallus_gallus
ENSLBEG00000002184	smg6	100	68.925	ENSGAFG00000000379	smg6	100	68.709	Gambusia_affinis
ENSLBEG00000002184	smg6	86	76.654	ENSGACG00000020521	smg6	100	77.075	Gasterosteus_aculeatus
ENSLBEG00000002184	smg6	74	53.176	ENSGAGG00000025617	SMG6	84	53.381	Gopherus_agassizii
ENSLBEG00000002184	smg6	100	74.925	ENSHBUG00000021311	smg6	100	74.925	Haplochromis_burtoni
ENSLBEG00000002184	smg6	75	53.328	ENSHGLG00000012882	SMG6	88	56.306	Heterocephalus_glaber_female
ENSLBEG00000002184	smg6	75	53.481	ENSHGLG00100017815	SMG6	88	56.306	Heterocephalus_glaber_male
ENSLBEG00000002184	smg6	64	69.880	ENSHCOG00000008761	smg6	83	69.972	Hippocampus_comes
ENSLBEG00000002184	smg6	100	54.094	ENSIPUG00000012493	smg6	100	53.801	Ictalurus_punctatus
ENSLBEG00000002184	smg6	76	53.118	ENSSTOG00000028127	SMG6	81	59.024	Ictidomys_tridecemlineatus
ENSLBEG00000002184	smg6	56	50.301	ENSJJAG00000015367	Smg6	79	49.023	Jaculus_jaculus
ENSLBEG00000002184	smg6	100	70.036	ENSKMAG00000000279	smg6	100	70.275	Kryptolebias_marmoratus
ENSLBEG00000002184	smg6	66	65.217	ENSLOCG00000006448	smg6	87	61.593	Lepisosteus_oculatus
ENSLBEG00000002184	smg6	75	53.623	ENSLAFG00000001261	SMG6	85	53.298	Loxodonta_africana
ENSLBEG00000002184	smg6	91	46.440	ENSMNEG00000044592	SMG6	86	50.452	Macaca_nemestrina
ENSLBEG00000002184	smg6	100	76.780	ENSMAMG00000020119	smg6	100	78.443	Mastacembelus_armatus
ENSLBEG00000002184	smg6	100	74.671	ENSMZEG00005024736	smg6	100	74.731	Maylandia_zebra
ENSLBEG00000002184	smg6	76	53.574	ENSMICG00000012913	SMG6	86	53.379	Microcebus_murinus
ENSLBEG00000002184	smg6	100	70.215	ENSMMOG00000010883	smg6	100	70.275	Mola_mola
ENSLBEG00000002184	smg6	77	52.577	ENSMODG00000010622	SMG6	87	52.427	Monodelphis_domestica
ENSLBEG00000002184	smg6	100	76.707	ENSMALG00000001106	smg6	100	76.826	Monopterus_albus
ENSLBEG00000002184	smg6	73	53.359	MGP_CAROLIEiJ_G0016729	Smg6	96	65.915	Mus_caroli
ENSLBEG00000002184	smg6	73	53.643	ENSMUSG00000038290	Smg6	96	65.915	Mus_musculus
ENSLBEG00000002184	smg6	73	53.396	MGP_PahariEiJ_G0017866	Smg6	97	64.444	Mus_pahari
ENSLBEG00000002184	smg6	73	53.566	MGP_SPRETEiJ_G0017572	Smg6	96	65.634	Mus_spretus
ENSLBEG00000002184	smg6	76	53.233	ENSMLUG00000005739	SMG6	86	52.834	Myotis_lucifugus
ENSLBEG00000002184	smg6	73	53.666	ENSNGAG00000007287	Smg6	88	55.357	Nannospalax_galili
ENSLBEG00000002184	smg6	98	71.586	ENSNBRG00000009511	smg6	99	74.818	Neolamprologus_brichardi
ENSLBEG00000002184	smg6	76	53.212	ENSNLEG00000017171	SMG6	100	56.569	Nomascus_leucogenys
ENSLBEG00000002184	smg6	74	53.763	ENSMEUG00000015804	SMG6	88	52.072	Notamacropus_eugenii
ENSLBEG00000002184	smg6	50	60.622	ENSOPRG00000000579	SMG6	87	49.145	Ochotona_princeps
ENSLBEG00000002184	smg6	76	47.872	ENSODEG00000008038	SMG6	81	52.299	Octodon_degus
ENSLBEG00000002184	smg6	100	74.612	ENSONIG00000005594	smg6	100	79.147	Oreochromis_niloticus
ENSLBEG00000002184	smg6	75	53.764	ENSOCUG00000013018	SMG6	85	53.634	Oryctolagus_cuniculus
ENSLBEG00000002184	smg6	100	66.250	ENSORLG00000003317	smg6	100	67.024	Oryzias_latipes
ENSLBEG00000002184	smg6	100	66.210	ENSORLG00020015343	smg6	100	66.766	Oryzias_latipes_hni
ENSLBEG00000002184	smg6	100	66.409	ENSORLG00015020454	smg6	100	67.183	Oryzias_latipes_hsok
ENSLBEG00000002184	smg6	100	65.456	ENSOMEG00000010838	smg6	100	66.567	Oryzias_melastigma
ENSLBEG00000002184	smg6	76	52.893	ENSOGAG00000004483	SMG6	86	52.671	Otolemur_garnettii
ENSLBEG00000002184	smg6	75	53.893	ENSOARG00000015076	SMG6	87	53.481	Ovis_aries
ENSLBEG00000002184	smg6	76	53.507	ENSPPRG00000014581	SMG6	87	53.666	Panthera_pardus
ENSLBEG00000002184	smg6	76	53.507	ENSPTIG00000008925	SMG6	100	56.752	Panthera_tigris_altaica
ENSLBEG00000002184	smg6	76	53.323	ENSPTRG00000008544	SMG6	100	56.569	Pan_troglodytes
ENSLBEG00000002184	smg6	67	51.580	ENSPSIG00000006660	SMG6	81	51.986	Pelodiscus_sinensis
ENSLBEG00000002184	smg6	94	80.163	ENSPMGG00000000844	smg6	99	79.484	Periophthalmus_magnuspinnatus
ENSLBEG00000002184	smg6	73	53.989	ENSPEMG00000020707	Smg6	90	57.658	Peromyscus_maniculatus_bairdii
ENSLBEG00000002184	smg6	100	69.749	ENSPFOG00000012035	smg6	97	74.825	Poecilia_formosa
ENSLBEG00000002184	smg6	100	69.869	ENSPLAG00000017660	smg6	100	69.534	Poecilia_latipinna
ENSLBEG00000002184	smg6	100	69.809	ENSPMEG00000000258	smg6	100	69.594	Poecilia_mexicana
ENSLBEG00000002184	smg6	100	69.332	ENSPREG00000010066	smg6	100	69.194	Poecilia_reticulata
ENSLBEG00000002184	smg6	76	49.478	ENSPPYG00000007790	SMG6	86	49.286	Pongo_abelii
ENSLBEG00000002184	smg6	72	58.559	ENSPCAG00000000552	SMG6	86	50.755	Procavia_capensis
ENSLBEG00000002184	smg6	76	53.198	ENSPCOG00000020925	SMG6	86	53.040	Propithecus_coquereli
ENSLBEG00000002184	smg6	70	61.480	ENSPVAG00000002159	SMG6	68	61.125	Pteropus_vampyrus
ENSLBEG00000002184	smg6	93	72.622	ENSPNYG00000024151	smg6	99	74.884	Pundamilia_nyererei
ENSLBEG00000002184	smg6	87	59.042	ENSPNAG00000015480	smg6	89	58.958	Pygocentrus_nattereri
ENSLBEG00000002184	smg6	78	51.429	ENSRNOG00000003041	Smg6	96	65.915	Rattus_norvegicus
ENSLBEG00000002184	smg6	76	53.113	ENSRROG00000030423	SMG6	100	56.752	Rhinopithecus_roxellana
ENSLBEG00000002184	smg6	76	52.919	ENSSBOG00000022518	SMG6	86	51.355	Saimiri_boliviensis_boliviensis
ENSLBEG00000002184	smg6	76	53.574	ENSSHAG00000010045	SMG6	86	52.901	Sarcophilus_harrisii
ENSLBEG00000002184	smg6	100	50.415	ENSSFOG00015005436	smg6	77	61.700	Scleropages_formosus
ENSLBEG00000002184	smg6	100	75.943	ENSSMAG00000019777	smg6	100	75.943	Scophthalmus_maximus
ENSLBEG00000002184	smg6	100	81.459	ENSSDUG00000016412	smg6	100	81.579	Seriola_dumerili
ENSLBEG00000002184	smg6	91	82.194	ENSSLDG00000020747	smg6	98	82.326	Seriola_lalandi_dorsalis
ENSLBEG00000002184	smg6	75	53.185	ENSSPUG00000007152	SMG6	85	52.615	Sphenodon_punctatus
ENSLBEG00000002184	smg6	100	78.422	ENSSPAG00000015633	smg6	100	78.661	Stegastes_partitus
ENSLBEG00000002184	smg6	75	54.336	ENSSSCG00000017826	SMG6	85	53.917	Sus_scrofa
ENSLBEG00000002184	smg6	77	52.849	ENSTGUG00000005836	SMG6	85	53.159	Taeniopygia_guttata
ENSLBEG00000002184	smg6	95	69.444	ENSTRUG00000000358	smg6	96	74.116	Takifugu_rubripes
ENSLBEG00000002184	smg6	91	78.441	ENSTNIG00000016164	smg6	100	78.998	Tetraodon_nigroviridis
ENSLBEG00000002184	smg6	76	50.113	ENSTBEG00000011424	SMG6	86	49.886	Tupaia_belangeri
ENSLBEG00000002184	smg6	68	55.619	ENSTTRG00000001175	SMG6	77	55.128	Tursiops_truncatus
ENSLBEG00000002184	smg6	59	91.667	ENSVPAG00000000225	SMG6	70	91.667	Vicugna_pacos
ENSLBEG00000002184	smg6	75	54.461	ENSVVUG00000021727	SMG6	87	54.290	Vulpes_vulpes
ENSLBEG00000002184	smg6	64	54.895	ENSXETG00000023799	SMG6	73	55.027	Xenopus_tropicalis
ENSLBEG00000002184	smg6	98	66.930	ENSXCOG00000009867	smg6	99	66.890	Xiphophorus_couchianus
ENSLBEG00000002184	smg6	100	69.112	ENSXMAG00000010321	smg6	100	68.795	Xiphophorus_maculatus