EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000002527 (Gene tree)
Gene ID: 109982437
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 23713 bases
Position: chrFKLU01000043.1:1627081-1650793
Accession: 109982437
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000003291	PUF	PF00806.19	3.3e-69	1	8
ENSLBEP00000003291	PUF	PF00806.19	3.3e-69	2	8
ENSLBEP00000003291	PUF	PF00806.19	3.3e-69	3	8
ENSLBEP00000003291	PUF	PF00806.19	3.3e-69	4	8
ENSLBEP00000003291	PUF	PF00806.19	3.3e-69	5	8
ENSLBEP00000003291	PUF	PF00806.19	3.3e-69	6	8
ENSLBEP00000003291	PUF	PF00806.19	3.3e-69	7	8
ENSLBEP00000003291	PUF	PF00806.19	3.3e-69	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000003463	-	6371	XM_020631651	ENSLBEP00000003291	1159 (aa)	XP_020487307	UPI0009B39216

Gene Model

Click here to download ENSLBEG00000002527's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000002527's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000002527	pum1	97	65.255	ENSLBEG00000020488	pum2	60	78.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000002527	pum1	94	91.084	ENSG00000134644	PUM1	98	91.566	Homo_sapiens
ENSLBEG00000002527	pum1	100	98.022	ENSAPOG00000021632	pum1	100	99.518	Acanthochromis_polyacanthus
ENSLBEG00000002527	pum1	100	75.785	ENSAMEG00000017656	PUM1	97	73.593	Ailuropoda_melanoleuca
ENSLBEG00000002527	pum1	100	96.733	ENSACIG00000021013	pum1	100	96.733	Amphilophus_citrinellus
ENSLBEG00000002527	pum1	100	98.022	ENSAOCG00000003944	pum1	100	98.022	Amphiprion_ocellaris
ENSLBEG00000002527	pum1	100	98.022	ENSAPEG00000014550	pum1	100	98.022	Amphiprion_percula
ENSLBEG00000002527	pum1	100	97.678	ENSATEG00000016004	pum1	100	97.678	Anabas_testudineus
ENSLBEG00000002527	pum1	100	76.427	ENSAPLG00000009351	PUM1	100	74.151	Anas_platyrhynchos
ENSLBEG00000002527	pum1	100	75.871	ENSACAG00000000682	PUM1	98	75.290	Anolis_carolinensis
ENSLBEG00000002527	pum1	93	90.843	ENSANAG00000027865	PUM1	100	91.325	Aotus_nancymaae
ENSLBEG00000002527	pum1	92	97.089	ENSACLG00000019354	pum1	100	97.089	Astatotilapia_calliptera
ENSLBEG00000002527	pum1	100	81.510	ENSAMXG00000020607	pum1	96	81.425	Astyanax_mexicanus
ENSLBEG00000002527	pum1	94	91.566	ENSBTAG00000018979	PUM1	100	92.048	Bos_taurus
ENSLBEG00000002527	pum1	94	91.084	ENSCJAG00000006035	PUM1	100	91.566	Callithrix_jacchus
ENSLBEG00000002527	pum1	87	91.084	ENSCAFG00020024616	PUM1	98	91.566	Canis_lupus_dingo
ENSLBEG00000002527	pum1	94	91.084	ENSCHIG00000012952	PUM1	100	91.566	Capra_hircus
ENSLBEG00000002527	pum1	94	81.928	ENSTSYG00000008868	PUM1	100	82.410	Carlito_syrichta
ENSLBEG00000002527	pum1	100	75.600	ENSCPOG00000031613	PUM1	100	80.173	Cavia_porcellus
ENSLBEG00000002527	pum1	94	91.566	ENSCATG00000017991	PUM1	93	92.048	Cercocebus_atys
ENSLBEG00000002527	pum1	94	90.843	ENSCLAG00000007662	PUM1	100	91.325	Chinchilla_lanigera
ENSLBEG00000002527	pum1	100	74.754	ENSCSAG00000001028	PUM1	100	72.742	Chlorocebus_sabaeus
ENSLBEG00000002527	pum1	93	65.217	ENSCHOG00000010245	PUM1	93	65.700	Choloepus_hoffmanni
ENSLBEG00000002527	pum1	94	91.807	ENSCPBG00000009288	PUM1	100	91.807	Chrysemys_picta_bellii
ENSLBEG00000002527	pum1	94	91.084	ENSCANG00000042606	PUM1	100	91.566	Colobus_angolensis_palliatus
ENSLBEG00000002527	pum1	100	75.559	ENSCGRG00001024949	Pum1	100	81.683	Cricetulus_griseus_chok1gshd
ENSLBEG00000002527	pum1	100	75.559	ENSCGRG00000014197	Pum1	100	81.683	Cricetulus_griseus_crigri
ENSLBEG00000002527	pum1	92	95.689	ENSCSEG00000015981	pum1	100	95.689	Cynoglossus_semilaevis
ENSLBEG00000002527	pum1	100	96.647	ENSCVAG00000007043	pum1	100	96.647	Cyprinodon_variegatus
ENSLBEG00000002527	pum1	100	83.136	ENSDARG00000099256	pum1	100	80.662	Danio_rerio
ENSLBEG00000002527	pum1	100	76.096	ENSDNOG00000010939	PUM1	100	74.068	Dasypus_novemcinctus
ENSLBEG00000002527	pum1	85	90.843	ENSDORG00000001875	Pum1	100	91.325	Dipodomys_ordii
ENSLBEG00000002527	pum1	90	72.377	ENSETEG00000004355	PUM1	87	70.588	Echinops_telfairi
ENSLBEG00000002527	pum1	100	75.911	ENSEASG00005010813	PUM1	100	73.715	Equus_asinus_asinus
ENSLBEG00000002527	pum1	100	75.765	ENSECAG00000021369	PUM1	100	73.571	Equus_caballus
ENSLBEG00000002527	pum1	76	90.667	ENSEEUG00000003871	PUM1	74	91.111	Erinaceus_europaeus
ENSLBEG00000002527	pum1	100	88.908	ENSELUG00000002409	pum1	100	93.220	Esox_lucius
ENSLBEG00000002527	pum1	94	91.566	ENSFCAG00000010374	PUM1	100	92.048	Felis_catus
ENSLBEG00000002527	pum1	100	76.194	ENSFALG00000001214	PUM1	97	74.092	Ficedula_albicollis
ENSLBEG00000002527	pum1	100	75.682	ENSFDAG00000011319	PUM1	100	80.297	Fukomys_damarensis
ENSLBEG00000002527	pum1	96	89.718	ENSGALG00000042598	PUM1	99	89.718	Gallus_gallus
ENSLBEG00000002527	pum1	100	96.905	ENSGAFG00000015617	pum1	100	98.072	Gambusia_affinis
ENSLBEG00000002527	pum1	99	96.638	ENSGACG00000005717	pum1	100	96.638	Gasterosteus_aculeatus
ENSLBEG00000002527	pum1	96	89.919	ENSGAGG00000001290	PUM1	99	89.919	Gopherus_agassizii
ENSLBEG00000002527	pum1	94	91.084	ENSGGOG00000011983	PUM1	100	91.566	Gorilla_gorilla
ENSLBEG00000002527	pum1	100	97.334	ENSHBUG00000018718	pum1	100	97.334	Haplochromis_burtoni
ENSLBEG00000002527	pum1	100	75.600	ENSHGLG00000013819	Pum1	100	80.173	Heterocephalus_glaber_female
ENSLBEG00000002527	pum1	100	75.600	ENSHGLG00100008621	Pum1	100	80.173	Heterocephalus_glaber_male
ENSLBEG00000002527	pum1	92	88.837	ENSHCOG00000005149	pum1	100	89.587	Hippocampus_comes
ENSLBEG00000002527	pum1	100	80.523	ENSIPUG00000020421	pum1	100	80.270	Ictalurus_punctatus
ENSLBEG00000002527	pum1	100	75.911	ENSSTOG00000010757	PUM1	100	80.421	Ictidomys_tridecemlineatus
ENSLBEG00000002527	pum1	100	75.911	ENSJJAG00000000530	Pum1	100	80.545	Jaculus_jaculus
ENSLBEG00000002527	pum1	100	96.819	ENSKMAG00000003481	pum1	100	96.819	Kryptolebias_marmoratus
ENSLBEG00000002527	pum1	100	75.309	ENSLACG00000017188	PUM1	99	72.554	Latimeria_chalumnae
ENSLBEG00000002527	pum1	100	81.568	ENSLOCG00000005210	pum1	99	80.234	Lepisosteus_oculatus
ENSLBEG00000002527	pum1	100	75.977	ENSLAFG00000003178	PUM1	100	74.188	Loxodonta_africana
ENSLBEG00000002527	pum1	94	91.566	ENSMFAG00000010291	PUM1	100	92.048	Macaca_fascicularis
ENSLBEG00000002527	pum1	94	91.084	ENSMMUG00000013520	PUM1	100	91.566	Macaca_mulatta
ENSLBEG00000002527	pum1	94	91.084	ENSMNEG00000034639	PUM1	100	91.566	Macaca_nemestrina
ENSLBEG00000002527	pum1	94	91.084	ENSMLEG00000038743	PUM1	100	91.566	Mandrillus_leucophaeus
ENSLBEG00000002527	pum1	100	97.506	ENSMAMG00000011606	pum1	100	97.506	Mastacembelus_armatus
ENSLBEG00000002527	pum1	100	97.334	ENSMZEG00005005834	pum1	100	97.334	Maylandia_zebra
ENSLBEG00000002527	pum1	100	76.656	ENSMGAG00000000724	PUM1	100	76.151	Meleagris_gallopavo
ENSLBEG00000002527	pum1	100	75.642	ENSMAUG00000022090	Pum1	100	82.156	Mesocricetus_auratus
ENSLBEG00000002527	pum1	94	90.843	ENSMICG00000007713	-	100	91.325	Microcebus_murinus
ENSLBEG00000002527	pum1	94	90.144	ENSMICG00000012213	-	100	88.675	Microcebus_murinus
ENSLBEG00000002527	pum1	100	75.745	ENSMOCG00000015463	Pum1	100	81.807	Microtus_ochrogaster
ENSLBEG00000002527	pum1	85	98.795	ENSMMOG00000019817	pum1	100	71.747	Mola_mola
ENSLBEG00000002527	pum1	100	75.851	ENSMODG00000017067	PUM1	100	74.065	Monodelphis_domestica
ENSLBEG00000002527	pum1	85	99.518	ENSMALG00000016399	pum1	100	99.518	Monopterus_albus
ENSLBEG00000002527	pum1	100	75.476	MGP_CAROLIEiJ_G0026549	Pum1	100	80.050	Mus_caroli
ENSLBEG00000002527	pum1	100	75.476	ENSMUSG00000028580	Pum1	100	79.926	Mus_musculus
ENSLBEG00000002527	pum1	100	75.394	MGP_PahariEiJ_G0028881	Pum1	100	79.926	Mus_pahari
ENSLBEG00000002527	pum1	100	75.394	MGP_SPRETEiJ_G0027529	Pum1	100	79.926	Mus_spretus
ENSLBEG00000002527	pum1	100	75.993	ENSMPUG00000015454	PUM1	100	73.715	Mustela_putorius_furo
ENSLBEG00000002527	pum1	100	75.765	ENSMLUG00000006490	PUM1	100	73.488	Myotis_lucifugus
ENSLBEG00000002527	pum1	100	75.828	ENSNGAG00000002378	Pum1	100	80.421	Nannospalax_galili
ENSLBEG00000002527	pum1	79	97.875	ENSNBRG00000010689	pum1	100	97.875	Neolamprologus_brichardi
ENSLBEG00000002527	pum1	94	87.952	ENSNLEG00000001151	PUM1	100	88.434	Nomascus_leucogenys
ENSLBEG00000002527	pum1	73	77.893	ENSMEUG00000000976	-	67	79.810	Notamacropus_eugenii
ENSLBEG00000002527	pum1	82	91.589	ENSOPRG00000001776	PUM1	75	91.589	Ochotona_princeps
ENSLBEG00000002527	pum1	100	75.331	ENSODEG00000003465	PUM1	100	80.173	Octodon_degus
ENSLBEG00000002527	pum1	100	97.764	ENSONIG00000002290	pum1	100	97.764	Oreochromis_niloticus
ENSLBEG00000002527	pum1	85	62.955	ENSOANG00000004902	-	100	60.649	Ornithorhynchus_anatinus
ENSLBEG00000002527	pum1	99	75.808	ENSOCUG00000008641	PUM1	99	73.610	Oryctolagus_cuniculus
ENSLBEG00000002527	pum1	100	96.744	ENSORLG00000011482	pum1	100	96.744	Oryzias_latipes
ENSLBEG00000002527	pum1	100	96.744	ENSORLG00020019461	pum1	100	96.744	Oryzias_latipes_hni
ENSLBEG00000002527	pum1	100	96.744	ENSORLG00015011375	pum1	100	96.744	Oryzias_latipes_hsok
ENSLBEG00000002527	pum1	100	73.278	ENSOGAG00000011063	PUM1	100	71.155	Otolemur_garnettii
ENSLBEG00000002527	pum1	94	91.084	ENSOARG00000001899	PUM1	100	91.566	Ovis_aries
ENSLBEG00000002527	pum1	94	91.084	ENSPPAG00000044003	PUM1	100	91.566	Pan_paniscus
ENSLBEG00000002527	pum1	100	75.993	ENSPPRG00000001370	PUM1	100	80.421	Panthera_pardus
ENSLBEG00000002527	pum1	100	75.828	ENSPTIG00000010798	PUM1	100	80.917	Panthera_tigris_altaica
ENSLBEG00000002527	pum1	94	91.084	ENSPTRG00000000453	PUM1	100	91.566	Pan_troglodytes
ENSLBEG00000002527	pum1	94	91.566	ENSPANG00000016338	PUM1	100	92.048	Papio_anubis
ENSLBEG00000002527	pum1	95	92.530	ENSPKIG00000010578	pum1	100	76.333	Paramormyrops_kingsleyae
ENSLBEG00000002527	pum1	100	76.642	ENSPSIG00000014118	PUM1	100	74.295	Pelodiscus_sinensis
ENSLBEG00000002527	pum1	79	98.305	ENSPMGG00000005836	pum1	100	98.305	Periophthalmus_magnuspinnatus
ENSLBEG00000002527	pum1	100	75.642	ENSPEMG00000010009	Pum1	100	82.156	Peromyscus_maniculatus_bairdii
ENSLBEG00000002527	pum1	94	91.807	ENSPCIG00000014151	PUM1	100	91.566	Phascolarctos_cinereus
ENSLBEG00000002527	pum1	95	96.226	ENSPFOG00000007289	pum1	99	97.222	Poecilia_formosa
ENSLBEG00000002527	pum1	100	93.896	ENSPLAG00000007256	pum1	100	96.508	Poecilia_latipinna
ENSLBEG00000002527	pum1	92	96.172	ENSPMEG00000019543	pum1	99	96.172	Poecilia_mexicana
ENSLBEG00000002527	pum1	100	96.819	ENSPREG00000005195	pum1	100	97.458	Poecilia_reticulata
ENSLBEG00000002527	pum1	100	74.432	ENSPPYG00000001621	PUM1	100	72.358	Pongo_abelii
ENSLBEG00000002527	pum1	76	93.519	ENSPCAG00000001979	PUM1	73	93.519	Procavia_capensis
ENSLBEG00000002527	pum1	94	90.843	ENSPCOG00000004398	PUM1	100	91.325	Propithecus_coquereli
ENSLBEG00000002527	pum1	100	74.068	ENSPVAG00000005207	PUM1	97	71.867	Pteropus_vampyrus
ENSLBEG00000002527	pum1	100	97.420	ENSPNYG00000009518	pum1	100	97.420	Pundamilia_nyererei
ENSLBEG00000002527	pum1	100	81.934	ENSPNAG00000026728	pum1	100	81.598	Pygocentrus_nattereri
ENSLBEG00000002527	pum1	100	75.497	ENSRNOG00000011709	Pum1	100	73.383	Rattus_norvegicus
ENSLBEG00000002527	pum1	94	91.566	ENSRBIG00000042521	PUM1	100	92.048	Rhinopithecus_bieti
ENSLBEG00000002527	pum1	94	91.084	ENSRROG00000020156	PUM1	100	91.566	Rhinopithecus_roxellana
ENSLBEG00000002527	pum1	94	91.084	ENSSBOG00000032037	PUM1	100	91.566	Saimiri_boliviensis_boliviensis
ENSLBEG00000002527	pum1	100	75.934	ENSSHAG00000010918	PUM1	100	74.148	Sarcophilus_harrisii
ENSLBEG00000002527	pum1	100	97.420	ENSSMAG00000010918	pum1	100	99.518	Scophthalmus_maximus
ENSLBEG00000002527	pum1	100	98.452	ENSSDUG00000009021	pum1	100	98.452	Seriola_dumerili
ENSLBEG00000002527	pum1	94	98.095	ENSSLDG00000009667	pum1	100	98.095	Seriola_lalandi_dorsalis
ENSLBEG00000002527	pum1	94	79.088	ENSSARG00000003055	PUM1	91	76.254	Sorex_araneus
ENSLBEG00000002527	pum1	100	76.407	ENSSPUG00000006267	PUM1	100	74.129	Sphenodon_punctatus
ENSLBEG00000002527	pum1	100	97.936	ENSSPAG00000016636	pum1	100	97.936	Stegastes_partitus
ENSLBEG00000002527	pum1	100	88.508	ENSSSCG00000003591	PUM1	100	92.048	Sus_scrofa
ENSLBEG00000002527	pum1	100	98.194	ENSTRUG00000013121	pum1	100	99.153	Takifugu_rubripes
ENSLBEG00000002527	pum1	100	96.838	ENSTNIG00000016983	pum1	99	96.838	Tetraodon_nigroviridis
ENSLBEG00000002527	pum1	87	90.244	ENSTBEG00000013810	PUM1	89	90.244	Tupaia_belangeri
ENSLBEG00000002527	pum1	93	78.578	ENSTTRG00000007436	PUM1	88	76.164	Tursiops_truncatus
ENSLBEG00000002527	pum1	99	74.004	ENSUAMG00000018262	-	100	71.688	Ursus_americanus
ENSLBEG00000002527	pum1	94	91.566	ENSUMAG00000009211	PUM1	100	92.048	Ursus_maritimus
ENSLBEG00000002527	pum1	92	82.942	ENSVPAG00000005902	PUM1	92	80.917	Vicugna_pacos
ENSLBEG00000002527	pum1	94	91.566	ENSVVUG00000014631	PUM1	100	92.048	Vulpes_vulpes
ENSLBEG00000002527	pum1	100	72.870	ENSXETG00000012904	pum1	99	71.168	Xenopus_tropicalis
ENSLBEG00000002527	pum1	100	96.561	ENSXMAG00000002945	pum1	100	96.561	Xiphophorus_maculatus