EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000002983 (Gene tree)
Gene ID: 110002296
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 14615 bases
Position: chrFKLU01000929.1:79927-94541
Accession: 110002296
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000003916	EST1	PF10374.9	3.2e-26	1	1
ENSLBEP00000003916	EST1_DNA_bind	PF10373.9	2.2e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000004122	-	3360	XM_020657880	ENSLBEP00000003916	1119 (aa)	XP_020513536	-

Gene Model

Click here to download ENSLBEG00000002983's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000002983's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000002983	smg7	53	83.920	ENSLBEG00000005220	-	75	83.920

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000002983	smg7	99	66.350	ENSG00000116698	SMG7	84	92.903	Homo_sapiens
ENSLBEG00000002983	smg7	89	93.205	ENSAPOG00000009611	smg7	96	93.205	Acanthochromis_polyacanthus
ENSLBEG00000002983	smg7	99	65.833	ENSAMEG00000002357	SMG7	99	65.833	Ailuropoda_melanoleuca
ENSLBEG00000002983	smg7	97	85.532	ENSACIG00000015152	smg7	100	85.909	Amphilophus_citrinellus
ENSLBEG00000002983	smg7	99	90.679	ENSAOCG00000013538	smg7	99	90.854	Amphiprion_ocellaris
ENSLBEG00000002983	smg7	99	90.426	ENSAPEG00000007851	smg7	99	90.339	Amphiprion_percula
ENSLBEG00000002983	smg7	99	89.616	ENSATEG00000006931	smg7	99	89.791	Anabas_testudineus
ENSLBEG00000002983	smg7	99	65.086	ENSAPLG00000015811	SMG7	99	65.458	Anas_platyrhynchos
ENSLBEG00000002983	smg7	99	61.987	ENSACAG00000014989	SMG7	99	62.049	Anolis_carolinensis
ENSLBEG00000002983	smg7	99	66.149	ENSANAG00000028114	SMG7	86	91.195	Aotus_nancymaae
ENSLBEG00000002983	smg7	99	86.638	ENSACLG00000022079	smg7	99	86.725	Astatotilapia_calliptera
ENSLBEG00000002983	smg7	99	75.610	ENSAMXG00000020809	smg7	99	76.149	Astyanax_mexicanus
ENSLBEG00000002983	smg7	99	65.574	ENSBTAG00000008003	SMG7	99	65.464	Bos_taurus
ENSLBEG00000002983	smg7	99	66.149	ENSCJAG00000005135	SMG7	87	91.250	Callithrix_jacchus
ENSLBEG00000002983	smg7	99	61.897	ENSCAFG00000013276	SMG7	97	62.063	Canis_familiaris
ENSLBEG00000002983	smg7	99	65.574	ENSCAFG00020015475	SMG7	84	92.903	Canis_lupus_dingo
ENSLBEG00000002983	smg7	99	62.003	ENSCHIG00000018192	SMG7	99	62.303	Capra_hircus
ENSLBEG00000002983	smg7	99	66.264	ENSTSYG00000002667	SMG7	82	91.824	Carlito_syrichta
ENSLBEG00000002983	smg7	99	62.063	ENSCPOG00000008906	SMG7	99	61.777	Cavia_porcellus
ENSLBEG00000002983	smg7	99	66.235	ENSCCAG00000028596	SMG7	86	91.195	Cebus_capucinus
ENSLBEG00000002983	smg7	99	66.523	ENSCATG00000011063	SMG7	86	91.195	Cercocebus_atys
ENSLBEG00000002983	smg7	99	66.091	ENSCLAG00000010751	SMG7	99	65.833	Chinchilla_lanigera
ENSLBEG00000002983	smg7	99	62.895	ENSCSAG00000012654	SMG7	97	62.978	Chlorocebus_sabaeus
ENSLBEG00000002983	smg7	91	61.905	ENSCHOG00000010522	SMG7	89	61.905	Choloepus_hoffmanni
ENSLBEG00000002983	smg7	99	66.810	ENSCPBG00000015724	SMG7	99	66.466	Chrysemys_picta_bellii
ENSLBEG00000002983	smg7	99	66.466	ENSCANG00000015680	SMG7	86	91.772	Colobus_angolensis_palliatus
ENSLBEG00000002983	smg7	99	65.517	ENSCGRG00001013705	Smg7	99	65.259	Cricetulus_griseus_chok1gshd
ENSLBEG00000002983	smg7	99	65.487	ENSCGRG00000018401	Smg7	100	65.229	Cricetulus_griseus_crigri
ENSLBEG00000002983	smg7	98	82.042	ENSCVAG00000011842	smg7	100	81.602	Cyprinodon_variegatus
ENSLBEG00000002983	smg7	99	75.652	ENSDARG00000060767	smg7	99	76.215	Danio_rerio
ENSLBEG00000002983	smg7	99	62.396	ENSDORG00000007331	Smg7	99	62.479	Dipodomys_ordii
ENSLBEG00000002983	smg7	96	61.288	ENSETEG00000002654	SMG7	99	61.288	Echinops_telfairi
ENSLBEG00000002983	smg7	99	62.978	ENSEASG00005006524	SMG7	99	63.062	Equus_asinus_asinus
ENSLBEG00000002983	smg7	95	82.597	ENSECAG00000004313	SMG7	97	82.597	Equus_caballus
ENSLBEG00000002983	smg7	95	61.785	ENSEEUG00000002024	SMG7	92	61.698	Erinaceus_europaeus
ENSLBEG00000002983	smg7	96	75.647	ENSELUG00000010293	smg7	99	75.914	Esox_lucius
ENSLBEG00000002983	smg7	99	64.991	ENSFCAG00000010900	SMG7	99	64.983	Felis_catus
ENSLBEG00000002983	smg7	98	61.055	ENSFALG00000003047	SMG7	100	61.326	Ficedula_albicollis
ENSLBEG00000002983	smg7	99	62.448	ENSFDAG00000012121	SMG7	99	61.997	Fukomys_damarensis
ENSLBEG00000002983	smg7	99	82.765	ENSFHEG00000011073	smg7	99	82.049	Fundulus_heteroclitus
ENSLBEG00000002983	smg7	89	79.473	ENSGMOG00000004916	smg7	91	79.473	Gadus_morhua
ENSLBEG00000002983	smg7	99	64.384	ENSGALG00000004667	SMG7	99	65.236	Gallus_gallus
ENSLBEG00000002983	smg7	99	80.803	ENSGAFG00000019000	smg7	99	80.977	Gambusia_affinis
ENSLBEG00000002983	smg7	97	84.851	ENSGACG00000001634	smg7	99	84.851	Gasterosteus_aculeatus
ENSLBEG00000002983	smg7	99	66.350	ENSGGOG00000002342	SMG7	81	91.720	Gorilla_gorilla
ENSLBEG00000002983	smg7	100	83.820	ENSHBUG00000003726	smg7	99	85.804	Haplochromis_burtoni
ENSLBEG00000002983	smg7	99	66.437	ENSHGLG00000009353	SMG7	99	66.005	Heterocephalus_glaber_female
ENSLBEG00000002983	smg7	99	56.988	ENSHGLG00100004878	-	99	56.406	Heterocephalus_glaber_male
ENSLBEG00000002983	smg7	99	66.350	ENSHGLG00100009637	-	99	65.919	Heterocephalus_glaber_male
ENSLBEG00000002983	smg7	99	75.874	ENSIPUG00000016997	smg7	99	75.654	Ictalurus_punctatus
ENSLBEG00000002983	smg7	99	65.251	ENSSTOG00000000401	SMG7	99	65.251	Ictidomys_tridecemlineatus
ENSLBEG00000002983	smg7	99	62.333	ENSJJAG00000012351	Smg7	99	62.250	Jaculus_jaculus
ENSLBEG00000002983	smg7	97	81.662	ENSKMAG00000004900	smg7	100	81.210	Kryptolebias_marmoratus
ENSLBEG00000002983	smg7	99	65.990	ENSLACG00000000972	SMG7	99	66.298	Latimeria_chalumnae
ENSLBEG00000002983	smg7	99	67.243	ENSLOCG00000002010	smg7	99	65.029	Lepisosteus_oculatus
ENSLBEG00000002983	smg7	99	62.479	ENSLAFG00000008186	SMG7	99	62.562	Loxodonta_africana
ENSLBEG00000002983	smg7	99	65.425	ENSMFAG00000031653	SMG7	86	91.195	Macaca_fascicularis
ENSLBEG00000002983	smg7	99	65.887	ENSMMUG00000018458	SMG7	99	65.714	Macaca_mulatta
ENSLBEG00000002983	smg7	99	66.523	ENSMNEG00000034798	SMG7	86	91.195	Macaca_nemestrina
ENSLBEG00000002983	smg7	99	66.523	ENSMLEG00000037170	SMG7	99	66.350	Mandrillus_leucophaeus
ENSLBEG00000002983	smg7	87	86.053	ENSMAMG00000018733	smg7	85	86.053	Mastacembelus_armatus
ENSLBEG00000002983	smg7	99	86.725	ENSMZEG00005015247	smg7	99	86.638	Maylandia_zebra
ENSLBEG00000002983	smg7	97	64.179	ENSMGAG00000001561	SMG7	99	65.022	Meleagris_gallopavo
ENSLBEG00000002983	smg7	99	64.948	ENSMAUG00000019484	Smg7	99	64.691	Mesocricetus_auratus
ENSLBEG00000002983	smg7	99	66.437	ENSMICG00000007145	SMG7	83	91.195	Microcebus_murinus
ENSLBEG00000002983	smg7	99	64.797	ENSMOCG00000020748	Smg7	99	64.538	Microtus_ochrogaster
ENSLBEG00000002983	smg7	100	86.467	ENSMMOG00000001524	smg7	100	86.643	Mola_mola
ENSLBEG00000002983	smg7	91	66.135	ENSMODG00000007139	SMG7	98	65.947	Monodelphis_domestica
ENSLBEG00000002983	smg7	99	88.772	ENSMALG00000000061	smg7	93	88.860	Monopterus_albus
ENSLBEG00000002983	smg7	99	65.687	MGP_CAROLIEiJ_G0014704	Smg7	99	65.341	Mus_caroli
ENSLBEG00000002983	smg7	99	65.431	ENSMUSG00000042772	Smg7	99	65.259	Mus_musculus
ENSLBEG00000002983	smg7	99	65.660	MGP_PahariEiJ_G0027940	Smg7	99	65.401	Mus_pahari
ENSLBEG00000002983	smg7	99	65.517	MGP_SPRETEiJ_G0015511	Smg7	99	65.345	Mus_spretus
ENSLBEG00000002983	smg7	98	61.661	ENSMPUG00000011732	SMG7	97	61.745	Mustela_putorius_furo
ENSLBEG00000002983	smg7	99	62.252	ENSMLUG00000015417	SMG7	99	62.334	Myotis_lucifugus
ENSLBEG00000002983	smg7	99	65.746	ENSNGAG00000009836	Smg7	99	65.229	Nannospalax_galili
ENSLBEG00000002983	smg7	98	82.216	ENSNBRG00000024343	smg7	99	82.395	Neolamprologus_brichardi
ENSLBEG00000002983	smg7	99	66.523	ENSNLEG00000018018	SMG7	99	66.350	Nomascus_leucogenys
ENSLBEG00000002983	smg7	69	65.341	ENSMEUG00000004681	SMG7	73	65.341	Notamacropus_eugenii
ENSLBEG00000002983	smg7	96	57.826	ENSOPRG00000013942	SMG7	96	57.739	Ochotona_princeps
ENSLBEG00000002983	smg7	99	66.091	ENSODEG00000010390	SMG7	99	65.919	Octodon_degus
ENSLBEG00000002983	smg7	99	87.424	ENSONIG00000000277	smg7	99	87.511	Oreochromis_niloticus
ENSLBEG00000002983	smg7	98	61.255	ENSOANG00000000994	SMG7	100	61.269	Ornithorhynchus_anatinus
ENSLBEG00000002983	smg7	99	60.233	ENSOCUG00000005887	SMG7	92	60.067	Oryctolagus_cuniculus
ENSLBEG00000002983	smg7	99	79.541	ENSORLG00000007314	smg7	99	79.277	Oryzias_latipes
ENSLBEG00000002983	smg7	99	79.982	ENSORLG00020015779	smg7	99	79.718	Oryzias_latipes_hni
ENSLBEG00000002983	smg7	99	79.718	ENSORLG00015012289	smg7	99	79.453	Oryzias_latipes_hsok
ENSLBEG00000002983	smg7	99	72.278	ENSOMEG00000002328	smg7	99	74.264	Oryzias_melastigma
ENSLBEG00000002983	smg7	96	61.135	ENSOGAG00000003107	SMG7	93	61.168	Otolemur_garnettii
ENSLBEG00000002983	smg7	98	64.454	ENSOARG00000001352	SMG7	100	64.609	Ovis_aries
ENSLBEG00000002983	smg7	99	66.523	ENSPPAG00000031619	SMG7	88	90.062	Pan_paniscus
ENSLBEG00000002983	smg7	99	66.091	ENSPPRG00000011222	SMG7	99	66.005	Panthera_pardus
ENSLBEG00000002983	smg7	96	62.606	ENSPTIG00000007242	SMG7	100	62.521	Panthera_tigris_altaica
ENSLBEG00000002983	smg7	99	66.523	ENSPTRG00000001764	SMG7	86	91.195	Pan_troglodytes
ENSLBEG00000002983	smg7	99	66.523	ENSPANG00000004520	SMG7	99	66.350	Papio_anubis
ENSLBEG00000002983	smg7	99	68.832	ENSPKIG00000007242	smg7	99	68.981	Paramormyrops_kingsleyae
ENSLBEG00000002983	smg7	98	66.085	ENSPSIG00000012201	SMG7	100	65.824	Pelodiscus_sinensis
ENSLBEG00000002983	smg7	71	51.762	ENSPMGG00000021833	smg7	97	51.640	Periophthalmus_magnuspinnatus
ENSLBEG00000002983	smg7	99	65.022	ENSPEMG00000011315	Smg7	99	64.935	Peromyscus_maniculatus_bairdii
ENSLBEG00000002983	smg7	99	66.667	ENSPCIG00000003786	SMG7	87	92.308	Phascolarctos_cinereus
ENSLBEG00000002983	smg7	99	78.727	ENSPFOG00000019219	smg7	99	78.224	Poecilia_formosa
ENSLBEG00000002983	smg7	99	82.183	ENSPLAG00000001446	smg7	99	81.485	Poecilia_latipinna
ENSLBEG00000002983	smg7	96	81.769	ENSPMEG00000005218	smg7	99	81.047	Poecilia_mexicana
ENSLBEG00000002983	smg7	87	78.125	ENSPREG00000019039	smg7	91	77.621	Poecilia_reticulata
ENSLBEG00000002983	smg7	99	66.523	ENSPPYG00000000427	SMG7	99	66.350	Pongo_abelii
ENSLBEG00000002983	smg7	83	72.331	ENSPCAG00000008360	SMG7	86	72.331	Procavia_capensis
ENSLBEG00000002983	smg7	99	65.338	ENSPCOG00000011996	SMG7	78	91.195	Propithecus_coquereli
ENSLBEG00000002983	smg7	91	58.552	ENSPVAG00000000851	SMG7	89	58.371	Pteropus_vampyrus
ENSLBEG00000002983	smg7	99	86.964	ENSPNYG00000007643	smg7	99	87.139	Pundamilia_nyererei
ENSLBEG00000002983	smg7	99	76.603	ENSPNAG00000011374	smg7	99	76.298	Pygocentrus_nattereri
ENSLBEG00000002983	smg7	99	65.690	ENSRNOG00000027962	Smg7	99	65.895	Rattus_norvegicus
ENSLBEG00000002983	smg7	99	66.437	ENSRBIG00000036316	SMG7	99	66.264	Rhinopithecus_bieti
ENSLBEG00000002983	smg7	99	66.437	ENSRROG00000035719	SMG7	99	66.264	Rhinopithecus_roxellana
ENSLBEG00000002983	smg7	99	64.874	ENSSBOG00000023454	SMG7	84	92.903	Saimiri_boliviensis_boliviensis
ENSLBEG00000002983	smg7	99	66.465	ENSSHAG00000013147	SMG7	99	66.149	Sarcophilus_harrisii
ENSLBEG00000002983	smg7	99	72.806	ENSSFOG00015017252	smg7	100	72.025	Scleropages_formosus
ENSLBEG00000002983	smg7	99	85.664	ENSSMAG00000006067	smg7	99	85.312	Scophthalmus_maximus
ENSLBEG00000002983	smg7	99	90.199	ENSSDUG00000017543	smg7	99	90.026	Seriola_dumerili
ENSLBEG00000002983	smg7	99	66.178	ENSSPUG00000002064	SMG7	99	65.606	Sphenodon_punctatus
ENSLBEG00000002983	smg7	98	90.080	ENSSPAG00000008733	smg7	98	89.366	Stegastes_partitus
ENSLBEG00000002983	smg7	99	65.511	ENSSSCG00000015558	SMG7	99	65.598	Sus_scrofa
ENSLBEG00000002983	smg7	99	65.030	ENSTGUG00000003928	SMG7	100	65.487	Taeniopygia_guttata
ENSLBEG00000002983	smg7	99	70.816	ENSTNIG00000002802	smg7	99	69.597	Tetraodon_nigroviridis
ENSLBEG00000002983	smg7	77	66.857	ENSTBEG00000003220	SMG7	70	66.857	Tupaia_belangeri
ENSLBEG00000002983	smg7	96	61.717	ENSTTRG00000014778	SMG7	94	61.803	Tursiops_truncatus
ENSLBEG00000002983	smg7	96	64.050	ENSUAMG00000017473	SMG7	100	64.318	Ursus_americanus
ENSLBEG00000002983	smg7	96	64.050	ENSUMAG00000016389	SMG7	100	64.318	Ursus_maritimus
ENSLBEG00000002983	smg7	99	64.471	ENSVVUG00000008976	SMG7	99	64.731	Vulpes_vulpes
ENSLBEG00000002983	smg7	99	59.380	ENSXETG00000012528	smg7	99	58.990	Xenopus_tropicalis
ENSLBEG00000002983	smg7	99	81.627	ENSXMAG00000007123	smg7	99	80.927	Xiphophorus_maculatus