EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000003493 (Gene tree)
Gene ID: 109996835
Gene Symbol: smarcal1 (1 of many)
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 10989 bases
Position: chrFKLU01000388.1:362153-373141
Accession: 109996835
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000004531	ResIII	PF04851.15	2.8e-07	1	1
ENSLBEP00000004565	ResIII	PF04851.15	3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000004774	-	3068	XM_020651143	ENSLBEP00000004531	854 (aa)	XP_020506799	-
ENSLBET00000004810	-	3113	-	ENSLBEP00000004565	869 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000003493's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000003493's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000003493	smarcal1	88	97.025	ENSLBEG00000022915	smarcal1	97	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000003493	smarcal1	75	61.466	ENSG00000138375	SMARCAL1	99	65.839	Homo_sapiens
ENSLBEG00000003493	smarcal1	100	79.977	ENSAPOG00000020156	SMARCAL1	91	79.977	Acanthochromis_polyacanthus
ENSLBEG00000003493	smarcal1	87	86.009	ENSACIG00000001500	smarcal1	94	86.009	Amphilophus_citrinellus
ENSLBEG00000003493	smarcal1	100	79.625	ENSAOCG00000014266	SMARCAL1	92	79.625	Amphiprion_ocellaris
ENSLBEG00000003493	smarcal1	100	79.742	ENSAPEG00000015861	SMARCAL1	90	87.879	Amphiprion_percula
ENSLBEG00000003493	smarcal1	100	78.830	ENSATEG00000020624	SMARCAL1	91	78.830	Anabas_testudineus
ENSLBEG00000003493	smarcal1	99	53.289	ENSAPLG00000009864	SMARCAL1	91	52.849	Anas_platyrhynchos
ENSLBEG00000003493	smarcal1	99	54.939	ENSACAG00000004612	SMARCAL1	91	54.939	Anolis_carolinensis
ENSLBEG00000003493	smarcal1	100	78.220	ENSACLG00000015990	SMARCAL1	91	78.220	Astatotilapia_calliptera
ENSLBEG00000003493	smarcal1	100	64.802	ENSAMXG00000003350	smarcal1	90	64.203	Astyanax_mexicanus
ENSLBEG00000003493	smarcal1	98	63.993	ENSCPBG00000013599	SMARCAL1	90	63.993	Chrysemys_picta_bellii
ENSLBEG00000003493	smarcal1	81	48.730	ENSCING00000009308	-	98	48.730	Ciona_intestinalis
ENSLBEG00000003493	smarcal1	100	72.875	ENSCSEG00000010785	SMARCAL1	93	72.992	Cynoglossus_semilaevis
ENSLBEG00000003493	smarcal1	100	71.395	ENSCVAG00000018780	SMARCAL1	90	71.395	Cyprinodon_variegatus
ENSLBEG00000003493	smarcal1	61	54.302	ENSEBUG00000011906	SMARCAL1	90	47.866	Eptatretus_burgeri
ENSLBEG00000003493	smarcal1	75	77.551	ENSELUG00000010440	-	80	73.913	Esox_lucius
ENSLBEG00000003493	smarcal1	99	52.500	ENSFALG00000003981	SMARCAL1	91	52.500	Ficedula_albicollis
ENSLBEG00000003493	smarcal1	100	73.653	ENSFHEG00000008380	SMARCAL1	90	73.419	Fundulus_heteroclitus
ENSLBEG00000003493	smarcal1	64	74.941	ENSGMOG00000010034	smarcal1	93	74.941	Gadus_morhua
ENSLBEG00000003493	smarcal1	99	51.538	ENSGALG00000011475	RPL37A	91	51.262	Gallus_gallus
ENSLBEG00000003493	smarcal1	84	82.109	ENSGACG00000006073	SMARCAL1	98	85.009	Gasterosteus_aculeatus
ENSLBEG00000003493	smarcal1	76	64.715	ENSGAGG00000015660	SMARCAL1	70	64.715	Gopherus_agassizii
ENSLBEG00000003493	smarcal1	100	77.752	ENSHBUG00000002973	smarcal1	91	77.752	Haplochromis_burtoni
ENSLBEG00000003493	smarcal1	100	68.140	ENSHCOG00000017921	smarcal1	93	68.140	Hippocampus_comes
ENSLBEG00000003493	smarcal1	100	72.131	ENSKMAG00000012023	SMARCAL1	93	72.131	Kryptolebias_marmoratus
ENSLBEG00000003493	smarcal1	100	50.616	ENSLACG00000010974	SMARCAL1	91	52.218	Latimeria_chalumnae
ENSLBEG00000003493	smarcal1	100	62.747	ENSLOCG00000009637	smarcal1	97	62.631	Lepisosteus_oculatus
ENSLBEG00000003493	smarcal1	100	77.596	ENSMAMG00000000828	SMARCAL1	92	77.596	Mastacembelus_armatus
ENSLBEG00000003493	smarcal1	100	78.103	ENSMZEG00005007660	SMARCAL1	91	78.103	Maylandia_zebra
ENSLBEG00000003493	smarcal1	99	53.750	ENSMGAG00000011658	SMARCAL1	90	53.636	Meleagris_gallopavo
ENSLBEG00000003493	smarcal1	91	77.964	ENSMMOG00000003842	smarcal1	92	77.964	Mola_mola
ENSLBEG00000003493	smarcal1	100	52.032	ENSMODG00000015544	SMARCAL1	90	51.919	Monodelphis_domestica
ENSLBEG00000003493	smarcal1	90	83.734	ENSNBRG00000016273	smarcal1	95	83.734	Neolamprologus_brichardi
ENSLBEG00000003493	smarcal1	72	62.802	ENSMEUG00000004395	SMARCAL1	73	61.860	Notamacropus_eugenii
ENSLBEG00000003493	smarcal1	100	78.337	ENSONIG00000009036	smarcal1	92	86.825	Oreochromis_niloticus
ENSLBEG00000003493	smarcal1	100	72.131	ENSORLG00000016455	SMARCAL1	90	71.897	Oryzias_latipes
ENSLBEG00000003493	smarcal1	100	72.014	ENSORLG00020001610	SMARCAL1	90	71.780	Oryzias_latipes_hni
ENSLBEG00000003493	smarcal1	100	72.014	ENSORLG00015001865	SMARCAL1	90	71.780	Oryzias_latipes_hsok
ENSLBEG00000003493	smarcal1	100	72.281	ENSOMEG00000001845	smarcal1	89	78.984	Oryzias_melastigma
ENSLBEG00000003493	smarcal1	100	72.112	ENSPMGG00000019092	SMARCAL1	90	71.879	Periophthalmus_magnuspinnatus
ENSLBEG00000003493	smarcal1	100	50.677	ENSPCIG00000022514	SMARCAL1	98	50.677	Phascolarctos_cinereus
ENSLBEG00000003493	smarcal1	99	74.035	ENSPFOG00000000560	SMARCAL1	90	73.801	Poecilia_formosa
ENSLBEG00000003493	smarcal1	99	74.035	ENSPMEG00000018146	SMARCAL1	90	73.801	Poecilia_mexicana
ENSLBEG00000003493	smarcal1	65	86.341	ENSPREG00000009591	SMARCAL1	94	86.341	Poecilia_reticulata
ENSLBEG00000003493	smarcal1	100	65.146	ENSPNAG00000014900	smarcal1	86	65.146	Pygocentrus_nattereri
ENSLBEG00000003493	smarcal1	100	48.546	ENSSHAG00000013538	SMARCAL1	91	48.546	Sarcophilus_harrisii
ENSLBEG00000003493	smarcal1	100	78.023	ENSSMAG00000010427	SMARCAL1	91	78.023	Scophthalmus_maximus
ENSLBEG00000003493	smarcal1	100	81.988	ENSSDUG00000017470	SMARCAL1	89	81.988	Seriola_dumerili
ENSLBEG00000003493	smarcal1	100	81.637	ENSSLDG00000007224	SMARCAL1	91	81.637	Seriola_lalandi_dorsalis
ENSLBEG00000003493	smarcal1	85	59.892	ENSSPUG00000015369	SMARCAL1	73	59.892	Sphenodon_punctatus
ENSLBEG00000003493	smarcal1	86	87.611	ENSSPAG00000003742	smarcal1	96	81.757	Stegastes_partitus
ENSLBEG00000003493	smarcal1	75	58.307	ENSSSCG00000035501	SMARCAL1	70	58.621	Sus_scrofa
ENSLBEG00000003493	smarcal1	73	62.620	ENSTGUG00000005079	SMARCAL1	92	62.620	Taeniopygia_guttata
ENSLBEG00000003493	smarcal1	100	63.127	ENSTRUG00000010701	SMARCAL1	90	62.980	Takifugu_rubripes
ENSLBEG00000003493	smarcal1	62	59.813	ENSTTRG00000009001	SMARCAL1	56	60.112	Tursiops_truncatus
ENSLBEG00000003493	smarcal1	100	56.439	ENSXETG00000000465	smarcal1	68	68.118	Xenopus_tropicalis