EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000003547 (Gene tree)
Gene ID: 110002325
Gene Symbol: -
Alias: -
Full Name: probable ribonuclease ZC3H12C
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 15586 bases
Position: chrFKLU01000934.1:43965-59550
Accession: 110002325
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000004583	RNase_Zc3h12a	PF11977.8	5.5e-65	1	1
ENSLBEP00000004595	RNase_Zc3h12a	PF11977.8	5.5e-65	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000004831	-	6265	XM_020657921	ENSLBEP00000004583	956 (aa)	XP_020513577	UPI0009B344FD
ENSLBET00000004844	-	6614	XM_020657922	ENSLBEP00000004595	956 (aa)	XP_020513578	UPI0009B344FD

Gene Model

Click here to download ENSLBEG00000003547's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000003547's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000003547	-	97	97.849	ENSLBEG00000012554	-	99	99.620
ENSLBEG00000003547	-	89	43.645	ENSLBEG00000006448	zc3h12b	86	44.578

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000003547	-	82	47.482	ENSAPOG00000001632	-	93	62.332	Acanthochromis_polyacanthus
ENSLBEG00000003547	-	79	84.785	ENSAPOG00000015355	-	83	83.615	Acanthochromis_polyacanthus
ENSLBEG00000003547	-	94	74.814	ENSACIG00000001362	-	97	68.275	Amphilophus_citrinellus
ENSLBEG00000003547	-	99	82.480	ENSAOCG00000003866	-	88	94.068	Amphiprion_ocellaris
ENSLBEG00000003547	-	71	79.683	ENSAPEG00000018582	-	99	79.395	Amphiprion_percula
ENSLBEG00000003547	-	100	75.667	ENSAPEG00000005727	-	99	85.025	Amphiprion_percula
ENSLBEG00000003547	-	100	82.924	ENSATEG00000004134	-	100	83.436	Anabas_testudineus
ENSLBEG00000003547	-	82	46.871	ENSATEG00000002260	-	83	80.426	Anabas_testudineus
ENSLBEG00000003547	-	100	79.695	ENSACLG00000027924	-	100	79.939	Astatotilapia_calliptera
ENSLBEG00000003547	-	86	77.207	ENSCSEG00000010073	-	99	78.079	Cynoglossus_semilaevis
ENSLBEG00000003547	-	100	75.182	ENSCVAG00000002328	-	100	74.508	Cyprinodon_variegatus
ENSLBEG00000003547	-	84	56.829	ENSELUG00000009319	-	95	57.160	Esox_lucius
ENSLBEG00000003547	-	50	63.158	ENSELUG00000005470	-	95	52.257	Esox_lucius
ENSLBEG00000003547	-	91	83.333	ENSFHEG00000021225	-	100	72.303	Fundulus_heteroclitus
ENSLBEG00000003547	-	71	45.389	ENSGMOG00000017975	-	100	45.821	Gadus_morhua
ENSLBEG00000003547	-	100	73.765	ENSGAFG00000005290	-	100	73.018	Gambusia_affinis
ENSLBEG00000003547	-	71	46.861	ENSGACG00000001339	-	99	46.356	Gasterosteus_aculeatus
ENSLBEG00000003547	-	68	79.478	ENSGACG00000014201	-	100	80.348	Gasterosteus_aculeatus
ENSLBEG00000003547	-	100	79.391	ENSHBUG00000006831	-	100	79.633	Haplochromis_burtoni
ENSLBEG00000003547	-	93	83.333	ENSHCOG00000008878	-	99	83.333	Hippocampus_comes
ENSLBEG00000003547	-	100	76.275	ENSKMAG00000011694	-	100	76.422	Kryptolebias_marmoratus
ENSLBEG00000003547	-	82	49.512	ENSMAMG00000020372	-	83	49.635	Mastacembelus_armatus
ENSLBEG00000003547	-	97	76.842	ENSMAMG00000021794	-	94	88.312	Mastacembelus_armatus
ENSLBEG00000003547	-	100	79.594	ENSMZEG00005007718	-	100	79.837	Maylandia_zebra
ENSLBEG00000003547	-	82	46.377	ENSMMOG00000019526	-	79	47.115	Mola_mola
ENSLBEG00000003547	-	96	74.436	ENSMMOG00000005728	-	98	84.539	Mola_mola
ENSLBEG00000003547	-	100	80.000	ENSMALG00000010501	-	100	80.103	Monopterus_albus
ENSLBEG00000003547	-	100	79.492	ENSNBRG00000006978	-	100	79.735	Neolamprologus_brichardi
ENSLBEG00000003547	-	100	80.918	ENSONIG00000012268	-	100	80.816	Oreochromis_niloticus
ENSLBEG00000003547	-	100	69.330	ENSORLG00000029243	-	96	79.577	Oryzias_latipes
ENSLBEG00000003547	-	100	73.389	ENSORLG00020017005	-	100	74.428	Oryzias_latipes_hni
ENSLBEG00000003547	-	100	72.765	ENSORLG00015015211	-	100	73.395	Oryzias_latipes_hsok
ENSLBEG00000003547	-	100	72.103	ENSOMEG00000006666	-	100	73.231	Oryzias_melastigma
ENSLBEG00000003547	-	66	79.743	ENSPMGG00000009790	-	96	81.188	Periophthalmus_magnuspinnatus
ENSLBEG00000003547	-	50	60.164	ENSPMGG00000020126	-	50	61.220	Periophthalmus_magnuspinnatus
ENSLBEG00000003547	-	100	74.819	ENSPLAG00000009867	-	100	74.768	Poecilia_latipinna
ENSLBEG00000003547	-	83	48.344	ENSPMEG00000011676	-	83	47.590	Poecilia_mexicana
ENSLBEG00000003547	-	100	75.851	ENSPMEG00000006624	-	100	75.180	Poecilia_mexicana
ENSLBEG00000003547	-	83	48.238	ENSPREG00000001607	-	73	80.349	Poecilia_reticulata
ENSLBEG00000003547	-	100	74.793	ENSPREG00000010838	-	100	74.845	Poecilia_reticulata
ENSLBEG00000003547	-	82	49.940	ENSSMAG00000007258	-	83	49.940	Scophthalmus_maximus
ENSLBEG00000003547	-	100	80.977	ENSSMAG00000007545	-	100	80.671	Scophthalmus_maximus
ENSLBEG00000003547	-	100	83.300	ENSSDUG00000021864	-	100	82.895	Seriola_dumerili
ENSLBEG00000003547	-	83	50.120	ENSSDUG00000013237	-	90	66.447	Seriola_dumerili
ENSLBEG00000003547	-	84	49.231	ENSSLDG00000004886	-	83	50.363	Seriola_lalandi_dorsalis
ENSLBEG00000003547	-	100	82.895	ENSSLDG00000012268	-	100	83.300	Seriola_lalandi_dorsalis
ENSLBEG00000003547	-	99	44.091	ENSSPAG00000001850	-	84	48.980	Stegastes_partitus
ENSLBEG00000003547	-	100	82.877	ENSSPAG00000009485	-	100	82.347	Stegastes_partitus
ENSLBEG00000003547	-	99	76.732	ENSTRUG00000022519	-	99	76.756	Takifugu_rubripes
ENSLBEG00000003547	-	71	76.831	ENSTNIG00000014519	-	100	76.821	Tetraodon_nigroviridis
ENSLBEG00000003547	-	100	74.742	ENSXMAG00000027171	-	100	74.433	Xiphophorus_maculatus