EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000003601 (Gene tree)
Gene ID: 109991756
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 17600 bases
Position: chrFKLU01000213.1:233292-250891
Accession: 109991756
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000004865	CPSF_A	PF03178.15	1.1e-90	1	1
ENSLBEP00000004789	CPSF_A	PF03178.15	1.1e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000005134	-	4293	-	ENSLBEP00000004865	1430 (aa)	-	-
ENSLBET00000005057	-	4609	XM_020644112	ENSLBEP00000004789	1468 (aa)	XP_020499768	UPI0009B4ADAB

Gene Model

Click here to download ENSLBEG00000003601's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000003601's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000003601	cpsf1	100	77.590	ENSG00000071894	CPSF1	100	79.167	Homo_sapiens
ENSLBEG00000003601	cpsf1	100	92.459	ENSAPOG00000019621	cpsf1	100	92.120	Acanthochromis_polyacanthus
ENSLBEG00000003601	cpsf1	97	76.343	ENSAMEG00000005557	CPSF1	99	76.034	Ailuropoda_melanoleuca
ENSLBEG00000003601	cpsf1	100	88.128	ENSACIG00000006112	cpsf1	100	88.011	Amphilophus_citrinellus
ENSLBEG00000003601	cpsf1	100	89.242	ENSAOCG00000007120	cpsf1	100	89.039	Amphiprion_ocellaris
ENSLBEG00000003601	cpsf1	100	90.122	ENSAPEG00000005755	cpsf1	100	90.122	Amphiprion_percula
ENSLBEG00000003601	cpsf1	100	91.791	ENSATEG00000011097	cpsf1	100	91.859	Anabas_testudineus
ENSLBEG00000003601	cpsf1	93	73.745	ENSACAG00000009655	CPSF1	100	73.275	Anolis_carolinensis
ENSLBEG00000003601	cpsf1	100	77.725	ENSANAG00000036514	CPSF1	100	77.387	Aotus_nancymaae
ENSLBEG00000003601	cpsf1	99	91.352	ENSACLG00000012231	cpsf1	99	91.237	Astatotilapia_calliptera
ENSLBEG00000003601	cpsf1	100	78.162	ENSAMXG00000008485	cpsf1	100	77.893	Astyanax_mexicanus
ENSLBEG00000003601	cpsf1	100	76.611	ENSBTAG00000008355	CPSF1	100	76.826	Bos_taurus
ENSLBEG00000003601	cpsf1	100	32.697	WBGene00022301	cpsf-1	99	41.525	Caenorhabditis_elegans
ENSLBEG00000003601	cpsf1	100	77.686	ENSCJAG00000021421	CPSF1	100	77.319	Callithrix_jacchus
ENSLBEG00000003601	cpsf1	97	77.894	ENSCAFG00000001600	CPSF1	100	78.257	Canis_familiaris
ENSLBEG00000003601	cpsf1	100	77.718	ENSCAFG00020020821	CPSF1	100	77.313	Canis_lupus_dingo
ENSLBEG00000003601	cpsf1	100	74.204	ENSCHIG00000015833	CPSF1	100	73.772	Capra_hircus
ENSLBEG00000003601	cpsf1	100	77.861	ENSTSYG00000028560	CPSF1	100	79.630	Carlito_syrichta
ENSLBEG00000003601	cpsf1	97	76.783	ENSCAPG00000014921	CPSF1	99	76.412	Cavia_aperea
ENSLBEG00000003601	cpsf1	100	76.303	ENSCPOG00000011448	CPSF1	100	75.934	Cavia_porcellus
ENSLBEG00000003601	cpsf1	100	77.893	ENSCCAG00000037658	CPSF1	100	78.899	Cebus_capucinus
ENSLBEG00000003601	cpsf1	100	77.590	ENSCATG00000037234	CPSF1	99	80.299	Cercocebus_atys
ENSLBEG00000003601	cpsf1	100	77.642	ENSCLAG00000012166	CPSF1	100	77.301	Chinchilla_lanigera
ENSLBEG00000003601	cpsf1	100	77.755	ENSCSAG00000008502	CPSF1	100	77.251	Chlorocebus_sabaeus
ENSLBEG00000003601	cpsf1	99	78.933	ENSCPBG00000018910	CPSF1	96	78.701	Chrysemys_picta_bellii
ENSLBEG00000003601	cpsf1	96	48.452	ENSCING00000000514	-	100	48.003	Ciona_intestinalis
ENSLBEG00000003601	cpsf1	99	48.730	ENSCSAVG00000002293	-	99	51.163	Ciona_savignyi
ENSLBEG00000003601	cpsf1	98	75.225	ENSCANG00000032760	CPSF1	100	79.167	Colobus_angolensis_palliatus
ENSLBEG00000003601	cpsf1	100	77.575	ENSCGRG00001016344	Cpsf1	100	77.093	Cricetulus_griseus_chok1gshd
ENSLBEG00000003601	cpsf1	100	75.745	ENSCGRG00000003118	Cpsf1	100	75.156	Cricetulus_griseus_crigri
ENSLBEG00000003601	cpsf1	100	86.764	ENSCSEG00000013464	cpsf1	99	88.816	Cynoglossus_semilaevis
ENSLBEG00000003601	cpsf1	85	90.110	ENSCVAG00000014059	cpsf1	100	81.019	Cyprinodon_variegatus
ENSLBEG00000003601	cpsf1	100	85.917	ENSDARG00000034178	cpsf1	100	85.579	Danio_rerio
ENSLBEG00000003601	cpsf1	67	82.081	ENSDNOG00000043654	CPSF1	94	81.792	Dasypus_novemcinctus
ENSLBEG00000003601	cpsf1	97	77.817	ENSDORG00000006278	Cpsf1	99	77.563	Dipodomys_ordii
ENSLBEG00000003601	cpsf1	100	44.118	FBgn0024698	Cpsf160	100	44.326	Drosophila_melanogaster
ENSLBEG00000003601	cpsf1	81	83.221	ENSETEG00000006022	CPSF1	83	83.221	Echinops_telfairi
ENSLBEG00000003601	cpsf1	100	77.688	ENSEASG00005010774	CPSF1	100	77.432	Equus_asinus_asinus
ENSLBEG00000003601	cpsf1	100	77.552	ENSECAG00000022209	CPSF1	100	77.297	Equus_caballus
ENSLBEG00000003601	cpsf1	100	77.193	ENSEEUG00000000471	CPSF1	100	76.923	Erinaceus_europaeus
ENSLBEG00000003601	cpsf1	100	86.079	ENSELUG00000012271	cpsf1	100	86.022	Esox_lucius
ENSLBEG00000003601	cpsf1	100	77.710	ENSFDAG00000016060	CPSF1	100	77.236	Fukomys_damarensis
ENSLBEG00000003601	cpsf1	100	86.137	ENSFHEG00000016801	cpsf1	100	86.477	Fundulus_heteroclitus
ENSLBEG00000003601	cpsf1	100	86.527	ENSGMOG00000000796	cpsf1	100	86.662	Gadus_morhua
ENSLBEG00000003601	cpsf1	96	89.286	ENSGAFG00000018890	cpsf1	100	89.286	Gambusia_affinis
ENSLBEG00000003601	cpsf1	100	89.581	ENSGACG00000008703	cpsf1	100	89.271	Gasterosteus_aculeatus
ENSLBEG00000003601	cpsf1	100	76.300	ENSGAGG00000004276	CPSF1	98	79.163	Gopherus_agassizii
ENSLBEG00000003601	cpsf1	100	77.671	ENSGGOG00000016185	CPSF1	100	79.167	Gorilla_gorilla
ENSLBEG00000003601	cpsf1	100	89.789	ENSHBUG00000018900	cpsf1	100	89.591	Haplochromis_burtoni
ENSLBEG00000003601	cpsf1	100	77.710	ENSHGLG00000016139	CPSF1	100	77.319	Heterocephalus_glaber_female
ENSLBEG00000003601	cpsf1	100	77.642	ENSHGLG00100009750	CPSF1	100	77.232	Heterocephalus_glaber_male
ENSLBEG00000003601	cpsf1	100	89.184	ENSHCOG00000018509	cpsf1	100	88.564	Hippocampus_comes
ENSLBEG00000003601	cpsf1	100	82.155	ENSIPUG00000011259	cpsf1	100	81.868	Ictalurus_punctatus
ENSLBEG00000003601	cpsf1	97	77.266	ENSSTOG00000009957	CPSF1	99	76.864	Ictidomys_tridecemlineatus
ENSLBEG00000003601	cpsf1	100	77.913	ENSJJAG00000023002	Cpsf1	100	77.509	Jaculus_jaculus
ENSLBEG00000003601	cpsf1	91	92.476	ENSKMAG00000001940	cpsf1	99	92.476	Kryptolebias_marmoratus
ENSLBEG00000003601	cpsf1	88	76.576	ENSLACG00000000233	CPSF1	92	76.576	Latimeria_chalumnae
ENSLBEG00000003601	cpsf1	100	80.621	ENSLOCG00000008484	cpsf1	100	81.014	Lepisosteus_oculatus
ENSLBEG00000003601	cpsf1	97	77.723	ENSLAFG00000022601	CPSF1	100	77.165	Loxodonta_africana
ENSLBEG00000003601	cpsf1	100	77.617	ENSMFAG00000037013	CPSF1	99	80.299	Macaca_fascicularis
ENSLBEG00000003601	cpsf1	100	77.617	ENSMMUG00000007380	CPSF1	98	81.470	Macaca_mulatta
ENSLBEG00000003601	cpsf1	97	77.920	ENSMNEG00000043564	CPSF1	100	79.167	Macaca_nemestrina
ENSLBEG00000003601	cpsf1	100	77.617	ENSMLEG00000043010	CPSF1	99	80.299	Mandrillus_leucophaeus
ENSLBEG00000003601	cpsf1	100	93.071	ENSMAMG00000003803	cpsf1	100	92.799	Mastacembelus_armatus
ENSLBEG00000003601	cpsf1	100	86.512	ENSMZEG00005001168	cpsf1	100	86.240	Maylandia_zebra
ENSLBEG00000003601	cpsf1	100	77.575	ENSMAUG00000003601	Cpsf1	100	77.168	Mesocricetus_auratus
ENSLBEG00000003601	cpsf1	100	77.671	ENSMICG00000015767	CPSF1	100	77.168	Microcebus_murinus
ENSLBEG00000003601	cpsf1	100	77.464	ENSMOCG00000022758	Cpsf1	100	77.024	Microtus_ochrogaster
ENSLBEG00000003601	cpsf1	100	89.834	ENSMMOG00000021245	cpsf1	100	89.514	Mola_mola
ENSLBEG00000003601	cpsf1	100	78.311	ENSMODG00000010755	CPSF1	100	77.958	Monodelphis_domestica
ENSLBEG00000003601	cpsf1	100	91.973	ENSMALG00000020545	cpsf1	100	91.156	Monopterus_albus
ENSLBEG00000003601	cpsf1	100	77.913	MGP_CAROLIEiJ_G0019936	Cpsf1	100	77.454	Mus_caroli
ENSLBEG00000003601	cpsf1	100	77.913	ENSMUSG00000034022	Cpsf1	100	77.454	Mus_musculus
ENSLBEG00000003601	cpsf1	100	77.913	MGP_PahariEiJ_G0019946	Cpsf1	100	77.454	Mus_pahari
ENSLBEG00000003601	cpsf1	100	77.981	MGP_SPRETEiJ_G0020839	Cpsf1	100	77.522	Mus_spretus
ENSLBEG00000003601	cpsf1	94	78.107	ENSMPUG00000006419	CPSF1	93	77.673	Mustela_putorius_furo
ENSLBEG00000003601	cpsf1	100	77.710	ENSNGAG00000022460	Cpsf1	100	77.301	Nannospalax_galili
ENSLBEG00000003601	cpsf1	100	83.786	ENSNBRG00000000813	cpsf1	100	83.549	Neolamprologus_brichardi
ENSLBEG00000003601	cpsf1	86	69.955	ENSNLEG00000010633	-	100	78.704	Nomascus_leucogenys
ENSLBEG00000003601	cpsf1	82	85.465	ENSMEUG00000014922	CPSF1	85	85.465	Notamacropus_eugenii
ENSLBEG00000003601	cpsf1	61	90.000	ENSOPRG00000004693	-	70	90.000	Ochotona_princeps
ENSLBEG00000003601	cpsf1	100	77.602	ENSODEG00000013995	CPSF1	100	77.387	Octodon_degus
ENSLBEG00000003601	cpsf1	100	89.973	ENSONIG00000007676	cpsf1	100	90.021	Oreochromis_niloticus
ENSLBEG00000003601	cpsf1	60	77.857	ENSOANG00000010716	CPSF1	91	77.857	Ornithorhynchus_anatinus
ENSLBEG00000003601	cpsf1	100	88.571	ENSORLG00000013544	cpsf1	100	87.679	Oryzias_latipes
ENSLBEG00000003601	cpsf1	100	88.503	ENSORLG00020021693	cpsf1	100	87.679	Oryzias_latipes_hni
ENSLBEG00000003601	cpsf1	100	88.707	ENSORLG00015009979	cpsf1	100	87.679	Oryzias_latipes_hsok
ENSLBEG00000003601	cpsf1	100	88.171	ENSOMEG00000011849	cpsf1	100	87.883	Oryzias_melastigma
ENSLBEG00000003601	cpsf1	100	77.943	ENSOGAG00000000315	CPSF1	100	77.454	Otolemur_garnettii
ENSLBEG00000003601	cpsf1	100	77.686	ENSPPAG00000019280	CPSF1	100	80.090	Pan_paniscus
ENSLBEG00000003601	cpsf1	100	76.371	ENSPTRG00000051253	-	100	80.090	Pan_troglodytes
ENSLBEG00000003601	cpsf1	100	77.686	ENSPTRG00000049288	-	100	80.090	Pan_troglodytes
ENSLBEG00000003601	cpsf1	97	77.991	ENSPANG00000015005	CPSF1	100	78.704	Papio_anubis
ENSLBEG00000003601	cpsf1	100	84.573	ENSPKIG00000002582	cpsf1	100	84.716	Paramormyrops_kingsleyae
ENSLBEG00000003601	cpsf1	100	78.446	ENSPCIG00000009035	CPSF1	100	78.093	Phascolarctos_cinereus
ENSLBEG00000003601	cpsf1	100	88.639	ENSPFOG00000012870	cpsf1	100	88.571	Poecilia_formosa
ENSLBEG00000003601	cpsf1	100	88.783	ENSPREG00000016307	cpsf1	100	88.647	Poecilia_reticulata
ENSLBEG00000003601	cpsf1	100	70.568	ENSPPYG00000018973	CPSF1	100	70.365	Pongo_abelii
ENSLBEG00000003601	cpsf1	91	84.659	ENSPCAG00000011541	CPSF1	94	84.659	Procavia_capensis
ENSLBEG00000003601	cpsf1	100	74.408	ENSPCOG00000020001	CPSF1	100	78.704	Propithecus_coquereli
ENSLBEG00000003601	cpsf1	91	87.714	ENSPVAG00000006761	CPSF1	91	87.714	Pteropus_vampyrus
ENSLBEG00000003601	cpsf1	100	91.570	ENSPNYG00000004906	cpsf1	100	91.230	Pundamilia_nyererei
ENSLBEG00000003601	cpsf1	100	80.567	ENSPNAG00000024395	cpsf1	100	80.258	Pygocentrus_nattereri
ENSLBEG00000003601	cpsf1	100	77.847	ENSRNOG00000030705	Cpsf1	100	77.370	Rattus_norvegicus
ENSLBEG00000003601	cpsf1	100	77.657	ENSRBIG00000044907	CPSF1	100	79.167	Rhinopithecus_bieti
ENSLBEG00000003601	cpsf1	100	77.725	ENSRROG00000044861	CPSF1	100	79.167	Rhinopithecus_roxellana
ENSLBEG00000003601	cpsf1	97	77.960	ENSSBOG00000027177	CPSF1	99	77.575	Saimiri_boliviensis_boliviensis
ENSLBEG00000003601	cpsf1	100	78.378	ENSSHAG00000006500	CPSF1	100	78.026	Sarcophilus_harrisii
ENSLBEG00000003601	cpsf1	100	83.024	ENSSFOG00015004606	cpsf1	100	85.185	Scleropages_formosus
ENSLBEG00000003601	cpsf1	100	92.255	ENSSMAG00000020547	cpsf1	100	92.323	Scophthalmus_maximus
ENSLBEG00000003601	cpsf1	100	90.978	ENSSDUG00000001100	cpsf1	100	90.562	Seriola_dumerili
ENSLBEG00000003601	cpsf1	100	90.840	ENSSLDG00000003619	cpsf1	100	90.632	Seriola_lalandi_dorsalis
ENSLBEG00000003601	cpsf1	89	74.214	ENSSARG00000003643	CPSF1	92	73.862	Sorex_araneus
ENSLBEG00000003601	cpsf1	96	79.713	ENSSPUG00000014396	CPSF1	99	79.640	Sphenodon_punctatus
ENSLBEG00000003601	cpsf1	100	92.658	ENSSPAG00000005349	cpsf1	100	92.522	Stegastes_partitus
ENSLBEG00000003601	cpsf1	100	77.079	ENSSSCG00000005906	CPSF1	100	76.689	Sus_scrofa
ENSLBEG00000003601	cpsf1	96	89.444	ENSTRUG00000013134	cpsf1	99	88.740	Takifugu_rubripes
ENSLBEG00000003601	cpsf1	100	87.458	ENSTNIG00000014027	cpsf1	100	87.256	Tetraodon_nigroviridis
ENSLBEG00000003601	cpsf1	78	71.195	ENSTBEG00000001756	CPSF1	91	70.812	Tupaia_belangeri
ENSLBEG00000003601	cpsf1	90	83.448	ENSTTRG00000001937	CPSF1	90	83.276	Tursiops_truncatus
ENSLBEG00000003601	cpsf1	97	78.003	ENSUAMG00000006476	CPSF1	98	77.730	Ursus_americanus
ENSLBEG00000003601	cpsf1	100	86.875	ENSXCOG00000003608	cpsf1	100	86.875	Xiphophorus_couchianus
ENSLBEG00000003601	cpsf1	100	86.736	ENSXMAG00000005798	cpsf1	100	86.528	Xiphophorus_maculatus