EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000004474 (Gene tree)
Gene ID: 109984127
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 12128 bases
Position: chrFKLU01000065.1:1803753-1815880
Accession: 109984127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000005832	RRM_1	PF00076.22	2.7e-31	1	2
ENSLBEP00000005832	RRM_1	PF00076.22	2.7e-31	2	2
ENSLBEP00000005860	RRM_1	PF00076.22	3.3e-31	1	2
ENSLBEP00000005860	RRM_1	PF00076.22	3.3e-31	2	2
ENSLBEP00000005818	RRM_1	PF00076.22	4e-31	1	2
ENSLBEP00000005818	RRM_1	PF00076.22	4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000006116	-	2396	XM_020634152	ENSLBEP00000005818	533 (aa)	XP_020489808	UPI0009B34E01
ENSLBET00000006160	-	1488	-	ENSLBEP00000005860	495 (aa)	-	-
ENSLBET00000006131	-	2201	-	ENSLBEP00000005832	468 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000004474's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000004474's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000004474	pspc1	67	61.587	ENSLBEG00000003163	sfpq	58	54.333
ENSLBEG00000004474	pspc1	71	64.848	ENSLBEG00000022623	nono	89	60.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000004474	pspc1	71	76.855	ENSG00000121390	PSPC1	94	72.826	Homo_sapiens
ENSLBEG00000004474	pspc1	100	78.839	ENSAPOG00000015946	pspc1	99	79.026	Acanthochromis_polyacanthus
ENSLBEG00000004474	pspc1	78	71.198	ENSAMEG00000017420	PSPC1	92	66.402	Ailuropoda_melanoleuca
ENSLBEG00000004474	pspc1	100	76.227	ENSACIG00000018695	pspc1	98	73.465	Amphilophus_citrinellus
ENSLBEG00000004474	pspc1	100	79.401	ENSAOCG00000005279	pspc1	99	79.401	Amphiprion_ocellaris
ENSLBEG00000004474	pspc1	100	78.839	ENSAPEG00000015927	pspc1	99	78.839	Amphiprion_percula
ENSLBEG00000004474	pspc1	99	73.956	ENSATEG00000004878	pspc1	98	73.956	Anabas_testudineus
ENSLBEG00000004474	pspc1	64	72.316	ENSAPLG00000006246	PSPC1	99	65.796	Anas_platyrhynchos
ENSLBEG00000004474	pspc1	71	64.583	ENSAPLG00000003643	SFPQ	81	54.651	Anas_platyrhynchos
ENSLBEG00000004474	pspc1	72	73.837	ENSACAG00000002093	PSPC1	88	64.463	Anolis_carolinensis
ENSLBEG00000004474	pspc1	71	57.434	ENSACAG00000013307	-	61	53.598	Anolis_carolinensis
ENSLBEG00000004474	pspc1	78	70.698	ENSANAG00000000059	PSPC1	93	71.154	Aotus_nancymaae
ENSLBEG00000004474	pspc1	99	75.100	ENSACLG00000027220	pspc1	98	75.100	Astatotilapia_calliptera
ENSLBEG00000004474	pspc1	98	61.749	ENSAMXG00000036881	pspc1	97	63.956	Astyanax_mexicanus
ENSLBEG00000004474	pspc1	90	59.420	ENSBTAG00000003934	PSPC1	92	65.669	Bos_taurus
ENSLBEG00000004474	pspc1	78	70.698	ENSCJAG00000004554	PSPC1	92	66.004	Callithrix_jacchus
ENSLBEG00000004474	pspc1	70	77.744	ENSCAFG00020002009	PSPC1	94	73.098	Canis_lupus_dingo
ENSLBEG00000004474	pspc1	78	70.737	ENSCHIG00000016708	PSPC1	92	65.669	Capra_hircus
ENSLBEG00000004474	pspc1	75	57.538	ENSTSYG00000032882	PSPC1	90	60.599	Carlito_syrichta
ENSLBEG00000004474	pspc1	71	76.855	ENSCPOG00000000395	PSPC1	89	75.358	Cavia_porcellus
ENSLBEG00000004474	pspc1	78	70.698	ENSCCAG00000033498	PSPC1	92	66.004	Cebus_capucinus
ENSLBEG00000004474	pspc1	72	75.510	ENSCATG00000036434	PSPC1	95	76.232	Cercocebus_atys
ENSLBEG00000004474	pspc1	65	71.781	ENSCLAG00000005241	PSPC1	91	65.278	Chinchilla_lanigera
ENSLBEG00000004474	pspc1	77	73.352	ENSCHOG00000008913	PSPC1	96	60.845	Choloepus_hoffmanni
ENSLBEG00000004474	pspc1	75	70.913	ENSCPBG00000020859	PSPC1	90	65.041	Chrysemys_picta_bellii
ENSLBEG00000004474	pspc1	62	56.357	ENSCSAVG00000003533	-	53	57.554	Ciona_savignyi
ENSLBEG00000004474	pspc1	56	81.298	ENSCANG00000018948	PSPC1	87	81.298	Colobus_angolensis_palliatus
ENSLBEG00000004474	pspc1	80	70.942	ENSCGRG00001018368	Pspc1	92	65.415	Cricetulus_griseus_chok1gshd
ENSLBEG00000004474	pspc1	80	70.942	ENSCGRG00000011724	Pspc1	92	65.415	Cricetulus_griseus_crigri
ENSLBEG00000004474	pspc1	100	68.539	ENSCVAG00000007679	-	99	68.539	Cyprinodon_variegatus
ENSLBEG00000004474	pspc1	95	64.038	ENSDARG00000006621	pspc1	100	65.349	Danio_rerio
ENSLBEG00000004474	pspc1	76	72.381	ENSDNOG00000011078	PSPC1	96	64.368	Dasypus_novemcinctus
ENSLBEG00000004474	pspc1	82	65.714	ENSDORG00000016050	Pspc1	96	60.795	Dipodomys_ordii
ENSLBEG00000004474	pspc1	72	41.322	ENSEBUG00000010133	pspc1	85	43.072	Eptatretus_burgeri
ENSLBEG00000004474	pspc1	91	47.257	ENSEBUG00000003964	-	72	59.398	Eptatretus_burgeri
ENSLBEG00000004474	pspc1	70	77.744	ENSEASG00005000119	PSPC1	85	77.039	Equus_asinus_asinus
ENSLBEG00000004474	pspc1	70	77.744	ENSECAG00000017286	PSPC1	85	77.039	Equus_caballus
ENSLBEG00000004474	pspc1	56	66.923	ENSEEUG00000011288	-	57	63.918	Erinaceus_europaeus
ENSLBEG00000004474	pspc1	96	64.378	ENSELUG00000003746	pspc1	97	65.863	Esox_lucius
ENSLBEG00000004474	pspc1	71	77.477	ENSFCAG00000027841	PSPC1	89	75.645	Felis_catus
ENSLBEG00000004474	pspc1	77	70.163	ENSFALG00000008750	PSPC1	90	64.919	Ficedula_albicollis
ENSLBEG00000004474	pspc1	80	70.789	ENSFDAG00000002617	PSPC1	95	63.969	Fukomys_damarensis
ENSLBEG00000004474	pspc1	100	58.867	ENSGMOG00000015074	pspc1	99	59.704	Gadus_morhua
ENSLBEG00000004474	pspc1	75	71.154	ENSGALG00000017142	PSPC1	90	64.646	Gallus_gallus
ENSLBEG00000004474	pspc1	83	75.321	ENSGAFG00000006327	pspc1	80	75.321	Gambusia_affinis
ENSLBEG00000004474	pspc1	100	71.402	ENSGACG00000014901	pspc1	99	81.818	Gasterosteus_aculeatus
ENSLBEG00000004474	pspc1	75	62.712	ENSGAGG00000017325	-	64	55.344	Gopherus_agassizii
ENSLBEG00000004474	pspc1	75	70.913	ENSGAGG00000019164	PSPC1	90	65.041	Gopherus_agassizii
ENSLBEG00000004474	pspc1	71	76.855	ENSGGOG00000003414	PSPC1	94	72.826	Gorilla_gorilla
ENSLBEG00000004474	pspc1	100	76.923	ENSHBUG00000001139	pspc1	99	77.903	Haplochromis_burtoni
ENSLBEG00000004474	pspc1	79	70.413	ENSHGLG00000018811	PSPC1	93	65.606	Heterocephalus_glaber_female
ENSLBEG00000004474	pspc1	66	74.204	ENSHGLG00100007962	PSPC1	95	74.679	Heterocephalus_glaber_male
ENSLBEG00000004474	pspc1	78	77.198	ENSHCOG00000013251	pspc1	97	71.818	Hippocampus_comes
ENSLBEG00000004474	pspc1	99	62.842	ENSIPUG00000013192	pspc1	98	66.111	Ictalurus_punctatus
ENSLBEG00000004474	pspc1	78	72.826	ENSSTOG00000026833	PSPC1	94	72.826	Ictidomys_tridecemlineatus
ENSLBEG00000004474	pspc1	73	74.716	ENSJJAG00000018334	Pspc1	90	66.395	Jaculus_jaculus
ENSLBEG00000004474	pspc1	96	61.504	ENSKMAG00000013525	-	95	62.203	Kryptolebias_marmoratus
ENSLBEG00000004474	pspc1	74	70.905	ENSLACG00000010762	PSPC1	88	64.815	Latimeria_chalumnae
ENSLBEG00000004474	pspc1	73	77.746	ENSLOCG00000010832	pspc1	95	66.732	Lepisosteus_oculatus
ENSLBEG00000004474	pspc1	75	74.302	ENSLAFG00000010968	PSPC1	90	66.802	Loxodonta_africana
ENSLBEG00000004474	pspc1	71	77.545	ENSMFAG00000032728	PSPC1	97	76.590	Macaca_fascicularis
ENSLBEG00000004474	pspc1	71	77.477	ENSMMUG00000020262	PSPC1	94	76.369	Macaca_mulatta
ENSLBEG00000004474	pspc1	73	74.716	ENSMNEG00000027401	PSPC1	94	69.752	Macaca_nemestrina
ENSLBEG00000004474	pspc1	64	73.088	ENSMLEG00000039043	PSPC1	94	67.143	Mandrillus_leucophaeus
ENSLBEG00000004474	pspc1	99	76.648	ENSMAMG00000004333	pspc1	99	77.024	Mastacembelus_armatus
ENSLBEG00000004474	pspc1	99	75.100	ENSMZEG00005005726	pspc1	98	75.100	Maylandia_zebra
ENSLBEG00000004474	pspc1	65	71.389	ENSMGAG00000015134	PSPC1	99	65.105	Meleagris_gallopavo
ENSLBEG00000004474	pspc1	80	64.921	ENSMAUG00000021067	Pspc1	94	61.798	Mesocricetus_auratus
ENSLBEG00000004474	pspc1	89	66.260	ENSMICG00000013970	PSPC1	94	73.098	Microcebus_murinus
ENSLBEG00000004474	pspc1	72	75.510	ENSMOCG00000006060	Pspc1	90	65.854	Microtus_ochrogaster
ENSLBEG00000004474	pspc1	81	85.714	ENSMMOG00000004352	pspc1	71	85.714	Mola_mola
ENSLBEG00000004474	pspc1	76	70.794	ENSMODG00000008029	PSPC1	69	71.262	Monodelphis_domestica
ENSLBEG00000004474	pspc1	99	73.258	ENSMALG00000008914	pspc1	99	72.932	Monopterus_albus
ENSLBEG00000004474	pspc1	72	75.291	MGP_CAROLIEiJ_G0019341	Pspc1	88	71.498	Mus_caroli
ENSLBEG00000004474	pspc1	72	75.291	ENSMUSG00000021938	Pspc1	88	71.498	Mus_musculus
ENSLBEG00000004474	pspc1	72	75.291	MGP_PahariEiJ_G0030359	Pspc1	88	71.498	Mus_pahari
ENSLBEG00000004474	pspc1	72	75.291	MGP_SPRETEiJ_G0020232	Pspc1	94	68.397	Mus_spretus
ENSLBEG00000004474	pspc1	76	71.934	ENSMPUG00000013347	PSPC1	92	66.402	Mustela_putorius_furo
ENSLBEG00000004474	pspc1	75	71.770	ENSMLUG00000017663	PSPC1	93	65.551	Myotis_lucifugus
ENSLBEG00000004474	pspc1	74	74.504	ENSNGAG00000011271	Pspc1	98	61.993	Nannospalax_galili
ENSLBEG00000004474	pspc1	83	76.289	ENSNBRG00000014059	pspc1	90	79.101	Neolamprologus_brichardi
ENSLBEG00000004474	pspc1	73	74.716	ENSNLEG00000001294	PSPC1	96	64.559	Nomascus_leucogenys
ENSLBEG00000004474	pspc1	55	71.014	ENSMEUG00000000476	PSPC1	75	71.014	Notamacropus_eugenii
ENSLBEG00000004474	pspc1	89	54.492	ENSODEG00000007817	-	92	55.602	Octodon_degus
ENSLBEG00000004474	pspc1	88	56.652	ENSODEG00000019012	-	92	60.392	Octodon_degus
ENSLBEG00000004474	pspc1	100	78.464	ENSONIG00000012010	pspc1	99	79.026	Oreochromis_niloticus
ENSLBEG00000004474	pspc1	84	54.048	ENSOANG00000011381	-	99	48.485	Ornithorhynchus_anatinus
ENSLBEG00000004474	pspc1	63	73.926	ENSOANG00000009017	-	99	66.905	Ornithorhynchus_anatinus
ENSLBEG00000004474	pspc1	76	71.734	ENSOCUG00000006153	PSPC1	96	64.491	Oryctolagus_cuniculus
ENSLBEG00000004474	pspc1	98	72.190	ENSORLG00000004232	-	97	69.260	Oryzias_latipes
ENSLBEG00000004474	pspc1	98	72.952	ENSORLG00020000578	PSPC1	97	70.019	Oryzias_latipes_hni
ENSLBEG00000004474	pspc1	100	71.402	ENSORLG00015017480	pspc1	99	68.529	Oryzias_latipes_hsok
ENSLBEG00000004474	pspc1	78	70.766	ENSOGAG00000012643	PSPC1	96	64.751	Otolemur_garnettii
ENSLBEG00000004474	pspc1	74	72.155	ENSOARG00000014163	PSPC1	94	64.583	Ovis_aries
ENSLBEG00000004474	pspc1	70	78.354	ENSPPAG00000009836	PSPC1	93	78.354	Pan_paniscus
ENSLBEG00000004474	pspc1	73	74.716	ENSPPRG00000008833	PSPC1	92	66.203	Panthera_pardus
ENSLBEG00000004474	pspc1	64	73.088	ENSPTIG00000016917	PSPC1	84	67.143	Panthera_tigris_altaica
ENSLBEG00000004474	pspc1	71	76.855	ENSPTRG00000005677	PSPC1	94	72.826	Pan_troglodytes
ENSLBEG00000004474	pspc1	71	77.545	ENSPANG00000001992	PSPC1	95	76.590	Papio_anubis
ENSLBEG00000004474	pspc1	97	65.458	ENSPKIG00000003578	pspc1	98	66.858	Paramormyrops_kingsleyae
ENSLBEG00000004474	pspc1	78	69.070	ENSPSIG00000005168	PSPC1	90	63.221	Pelodiscus_sinensis
ENSLBEG00000004474	pspc1	74	71.552	ENSPMGG00000015135	pspc1	94	71.429	Periophthalmus_magnuspinnatus
ENSLBEG00000004474	pspc1	72	75.510	ENSPEMG00000015214	Pspc1	96	63.916	Peromyscus_maniculatus_bairdii
ENSLBEG00000004474	pspc1	63	40.264	ENSPMAG00000004618	pspc1	89	40.264	Petromyzon_marinus
ENSLBEG00000004474	pspc1	76	70.960	ENSPCIG00000017680	PSPC1	90	66.194	Phascolarctos_cinereus
ENSLBEG00000004474	pspc1	100	72.171	ENSPFOG00000003362	pspc1	100	72.913	Poecilia_formosa
ENSLBEG00000004474	pspc1	100	72.171	ENSPLAG00000011540	pspc1	99	72.913	Poecilia_latipinna
ENSLBEG00000004474	pspc1	81	50.114	ENSPLAG00000004407	-	59	51.136	Poecilia_latipinna
ENSLBEG00000004474	pspc1	100	72.171	ENSPMEG00000008322	pspc1	99	72.913	Poecilia_mexicana
ENSLBEG00000004474	pspc1	81	50.797	ENSPMEG00000001025	-	57	51.591	Poecilia_mexicana
ENSLBEG00000004474	pspc1	100	71.800	ENSPREG00000007786	pspc1	99	72.542	Poecilia_reticulata
ENSLBEG00000004474	pspc1	72	75.510	ENSPPYG00000005186	PSPC1	93	69.526	Pongo_abelii
ENSLBEG00000004474	pspc1	50	82.716	ENSPCAG00000008314	-	50	82.716	Procavia_capensis
ENSLBEG00000004474	pspc1	89	62.834	ENSPCOG00000014364	PSPC1	95	62.008	Propithecus_coquereli
ENSLBEG00000004474	pspc1	72	75.219	ENSPVAG00000005036	PSPC1	92	65.010	Pteropus_vampyrus
ENSLBEG00000004474	pspc1	99	75.301	ENSPNYG00000008893	pspc1	98	75.301	Pundamilia_nyererei
ENSLBEG00000004474	pspc1	89	65.720	ENSPNAG00000016511	pspc1	99	64.286	Pygocentrus_nattereri
ENSLBEG00000004474	pspc1	72	75.510	ENSRNOG00000020782	Pspc1	88	71.671	Rattus_norvegicus
ENSLBEG00000004474	pspc1	79	70.872	ENSRBIG00000036057	PSPC1	99	75.284	Rhinopithecus_bieti
ENSLBEG00000004474	pspc1	78	70.901	ENSRROG00000036334	PSPC1	94	73.098	Rhinopithecus_roxellana
ENSLBEG00000004474	pspc1	56	81.298	ENSSBOG00000028172	PSPC1	90	77.536	Saimiri_boliviensis_boliviensis
ENSLBEG00000004474	pspc1	83	59.956	ENSSHAG00000004696	PSPC1	90	61.492	Sarcophilus_harrisii
ENSLBEG00000004474	pspc1	88	69.311	ENSSFOG00015001395	pspc1	99	69.897	Scleropages_formosus
ENSLBEG00000004474	pspc1	100	79.798	ENSSMAG00000001761	pspc1	99	76.059	Scophthalmus_maximus
ENSLBEG00000004474	pspc1	100	82.463	ENSSDUG00000010651	pspc1	99	82.649	Seriola_dumerili
ENSLBEG00000004474	pspc1	99	72.233	ENSSLDG00000004284	pspc1	98	74.648	Seriola_lalandi_dorsalis
ENSLBEG00000004474	pspc1	83	60.811	ENSSARG00000000888	PSPC1	98	57.885	Sorex_araneus
ENSLBEG00000004474	pspc1	80	60.287	ENSSPUG00000008550	PSPC1	90	59.101	Sphenodon_punctatus
ENSLBEG00000004474	pspc1	86	41.964	ENSSPUG00000001136	-	59	48.883	Sphenodon_punctatus
ENSLBEG00000004474	pspc1	100	82.732	ENSSPAG00000001921	pspc1	99	81.461	Stegastes_partitus
ENSLBEG00000004474	pspc1	72	75.219	ENSSSCG00000009569	PSPC1	89	75.723	Sus_scrofa
ENSLBEG00000004474	pspc1	75	71.154	ENSTGUG00000011295	PSPC1	99	65.631	Taeniopygia_guttata
ENSLBEG00000004474	pspc1	99	70.076	ENSTRUG00000011335	pspc1	98	69.886	Takifugu_rubripes
ENSLBEG00000004474	pspc1	99	71.347	ENSTNIG00000010358	pspc1	98	71.591	Tetraodon_nigroviridis
ENSLBEG00000004474	pspc1	88	57.113	ENSTBEG00000002361	PSPC1	78	64.662	Tupaia_belangeri
ENSLBEG00000004474	pspc1	79	70.481	ENSTTRG00000003343	PSPC1	91	66.667	Tursiops_truncatus
ENSLBEG00000004474	pspc1	65	75.325	ENSUAMG00000012309	PSPC1	93	72.699	Ursus_americanus
ENSLBEG00000004474	pspc1	79	70.872	ENSUMAG00000013993	PSPC1	98	75.358	Ursus_maritimus
ENSLBEG00000004474	pspc1	64	73.371	ENSVPAG00000010029	PSPC1	99	66.905	Vicugna_pacos
ENSLBEG00000004474	pspc1	70	77.744	ENSVVUG00000006414	PSPC1	94	73.626	Vulpes_vulpes
ENSLBEG00000004474	pspc1	83	76.607	ENSXCOG00000017438	pspc1	91	76.607	Xiphophorus_couchianus
ENSLBEG00000004474	pspc1	83	76.864	ENSXMAG00000007929	pspc1	91	76.864	Xiphophorus_maculatus