EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000004480 (Gene tree)
Gene ID: 110000433
Gene Symbol: rnaseh1
Alias: zgc:91971
Full Name: ribonuclease H1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 6801 bases
Position: chrFKLU01000671.1:57513-64313
Accession: 110000433
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000005943	RNase_H	PF00075.24	2.5e-41	1	1
ENSLBEP00000005974	RNase_H	PF00075.24	3.1e-41	1	1
ENSLBEP00000006038	RNase_H	PF00075.24	1.3e-40	1	1
ENSLBEP00000006004	RNase_H	PF00075.24	3e-35	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000006339	-	801	-	ENSLBEP00000006038	266 (aa)	-	-
ENSLBET00000006275	-	846	-	ENSLBEP00000005974	281 (aa)	-	-
ENSLBET00000006244	-	822	-	ENSLBEP00000005943	273 (aa)	-	-
ENSLBET00000006305	-	870	XM_020655701	ENSLBEP00000006004	289 (aa)	XP_020511357	-

Gene Model

Click here to download ENSLBEG00000004480's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000004480's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000004480	rnaseh1	97	53.791	ENSG00000171865	RNASEH1	91	53.430	Homo_sapiens
ENSLBEG00000004480	rnaseh1	97	79.336	ENSAPOG00000000412	rnaseh1	99	77.926	Acanthochromis_polyacanthus
ENSLBEG00000004480	rnaseh1	98	52.222	ENSAMEG00000018433	RNASEH1	99	52.113	Ailuropoda_melanoleuca
ENSLBEG00000004480	rnaseh1	97	81.887	ENSACIG00000014666	rnaseh1	97	78.201	Amphilophus_citrinellus
ENSLBEG00000004480	rnaseh1	97	81.181	ENSAOCG00000015210	rnaseh1	99	79.264	Amphiprion_ocellaris
ENSLBEG00000004480	rnaseh1	97	81.919	ENSAPEG00000014104	rnaseh1	99	79.264	Amphiprion_percula
ENSLBEG00000004480	rnaseh1	100	78.777	ENSATEG00000000598	rnaseh1	98	79.061	Anabas_testudineus
ENSLBEG00000004480	rnaseh1	91	52.734	ENSAPLG00000001961	RNASEH1	100	52.344	Anas_platyrhynchos
ENSLBEG00000004480	rnaseh1	95	47.458	ENSACAG00000016857	rnaseh1	91	45.946	Anolis_carolinensis
ENSLBEG00000004480	rnaseh1	97	52.708	ENSANAG00000024055	RNASEH1	99	49.662	Aotus_nancymaae
ENSLBEG00000004480	rnaseh1	97	78.623	ENSACLG00000006741	rnaseh1	100	74.516	Astatotilapia_calliptera
ENSLBEG00000004480	rnaseh1	96	59.176	ENSAMXG00000042940	rnaseh1	97	59.398	Astyanax_mexicanus
ENSLBEG00000004480	rnaseh1	95	55.894	ENSBTAG00000016235	RNASEH1	99	50.336	Bos_taurus
ENSLBEG00000004480	rnaseh1	97	36.330	WBGene00004382	rnh-1.0	97	36.330	Caenorhabditis_elegans
ENSLBEG00000004480	rnaseh1	97	51.957	ENSCJAG00000035450	RNASEH1	90	53.008	Callithrix_jacchus
ENSLBEG00000004480	rnaseh1	98	52.982	ENSCAFG00000003259	RNASEH1	99	52.632	Canis_familiaris
ENSLBEG00000004480	rnaseh1	58	60.377	ENSCAFG00020004994	RNASEH1	99	60.377	Canis_lupus_dingo
ENSLBEG00000004480	rnaseh1	98	53.521	ENSCHIG00000022264	-	98	53.169	Capra_hircus
ENSLBEG00000004480	rnaseh1	86	43.882	ENSCHIG00000022230	-	99	43.333	Capra_hircus
ENSLBEG00000004480	rnaseh1	96	52.453	ENSTSYG00000012926	RNASEH1	90	52.060	Carlito_syrichta
ENSLBEG00000004480	rnaseh1	88	54.217	ENSCAPG00000004813	RNASEH1	99	53.571	Cavia_aperea
ENSLBEG00000004480	rnaseh1	95	54.135	ENSCPOG00000022278	Rnaseh1	87	53.532	Cavia_porcellus
ENSLBEG00000004480	rnaseh1	97	52.313	ENSCCAG00000038017	RNASEH1	91	51.957	Cebus_capucinus
ENSLBEG00000004480	rnaseh1	97	53.069	ENSCATG00000016515	-	90	54.198	Cercocebus_atys
ENSLBEG00000004480	rnaseh1	98	49.814	ENSCATG00000016818	-	92	49.814	Cercocebus_atys
ENSLBEG00000004480	rnaseh1	97	52.708	ENSCLAG00000002440	RNASEH1	98	49.158	Chinchilla_lanigera
ENSLBEG00000004480	rnaseh1	97	54.579	ENSCSAG00000006943	RNASEH1	90	55.344	Chlorocebus_sabaeus
ENSLBEG00000004480	rnaseh1	66	59.239	ENSCHOG00000008547	RNASEH1	88	58.696	Choloepus_hoffmanni
ENSLBEG00000004480	rnaseh1	97	52.574	ENSCPBG00000021620	RNASEH1	100	52.574	Chrysemys_picta_bellii
ENSLBEG00000004480	rnaseh1	95	33.948	ENSCING00000014054	-	92	35.793	Ciona_intestinalis
ENSLBEG00000004480	rnaseh1	80	37.118	ENSCSAVG00000000009	-	97	36.170	Ciona_savignyi
ENSLBEG00000004480	rnaseh1	97	53.430	ENSCANG00000037763	RNASEH1	91	53.069	Colobus_angolensis_palliatus
ENSLBEG00000004480	rnaseh1	95	52.713	ENSCGRG00001008950	Rnaseh1	94	51.237	Cricetulus_griseus_chok1gshd
ENSLBEG00000004480	rnaseh1	95	52.713	ENSCGRG00000006029	Rnaseh1	94	51.237	Cricetulus_griseus_crigri
ENSLBEG00000004480	rnaseh1	98	69.534	ENSCSEG00000005741	rnaseh1	96	70.251	Cynoglossus_semilaevis
ENSLBEG00000004480	rnaseh1	97	75.556	ENSCVAG00000018717	rnaseh1	99	69.333	Cyprinodon_variegatus
ENSLBEG00000004480	rnaseh1	97	70.741	ENSDARG00000042571	rnaseh1	98	70.370	Danio_rerio
ENSLBEG00000004480	rnaseh1	97	53.480	ENSDNOG00000016056	RNASEH1	90	54.406	Dasypus_novemcinctus
ENSLBEG00000004480	rnaseh1	95	51.751	ENSDORG00000000704	Rnaseh1	96	50.365	Dipodomys_ordii
ENSLBEG00000004480	rnaseh1	96	36.519	FBgn0023171	rnh1	93	37.201	Drosophila_melanogaster
ENSLBEG00000004480	rnaseh1	95	50.758	ENSETEG00000012674	RNASEH1	89	52.510	Echinops_telfairi
ENSLBEG00000004480	rnaseh1	94	41.699	ENSEBUG00000006116	rnaseh1	78	41.603	Eptatretus_burgeri
ENSLBEG00000004480	rnaseh1	95	43.793	ENSEBUG00000008898	rnaseh1	98	43.793	Eptatretus_burgeri
ENSLBEG00000004480	rnaseh1	99	53.684	ENSEASG00005022200	RNASEH1	98	53.633	Equus_asinus_asinus
ENSLBEG00000004480	rnaseh1	99	53.684	ENSECAG00000020695	RNASEH1	98	53.633	Equus_caballus
ENSLBEG00000004480	rnaseh1	98	71.583	ENSELUG00000010112	rnaseh1	98	69.048	Esox_lucius
ENSLBEG00000004480	rnaseh1	98	53.659	ENSFCAG00000025832	RNASEH1	99	53.310	Felis_catus
ENSLBEG00000004480	rnaseh1	97	55.556	ENSFALG00000002069	RNASEH1	94	55.197	Ficedula_albicollis
ENSLBEG00000004480	rnaseh1	97	51.812	ENSFDAG00000002035	RNASEH1	88	50.699	Fukomys_damarensis
ENSLBEG00000004480	rnaseh1	97	74.242	ENSGMOG00000013818	rnaseh1	98	72.401	Gadus_morhua
ENSLBEG00000004480	rnaseh1	97	54.745	ENSGALG00000016389	RNASEH1	94	54.380	Gallus_gallus
ENSLBEG00000004480	rnaseh1	97	71.004	ENSGAFG00000001776	rnaseh1	99	65.753	Gambusia_affinis
ENSLBEG00000004480	rnaseh1	97	80.443	ENSGACG00000011935	rnaseh1	98	78.201	Gasterosteus_aculeatus
ENSLBEG00000004480	rnaseh1	96	54.779	ENSGAGG00000009150	RNASEH1	62	54.412	Gopherus_agassizii
ENSLBEG00000004480	rnaseh1	97	53.430	ENSGGOG00000034822	RNASEH1	91	53.069	Gorilla_gorilla
ENSLBEG00000004480	rnaseh1	97	77.536	ENSHBUG00000004666	rnaseh1	100	73.871	Haplochromis_burtoni
ENSLBEG00000004480	rnaseh1	97	51.103	ENSHGLG00000002585	Rnaseh1	85	50.730	Heterocephalus_glaber_female
ENSLBEG00000004480	rnaseh1	97	51.103	ENSHGLG00100005105	Rnaseh1	85	50.730	Heterocephalus_glaber_male
ENSLBEG00000004480	rnaseh1	99	73.381	ENSHCOG00000012329	rnaseh1	98	69.900	Hippocampus_comes
ENSLBEG00000004480	rnaseh1	97	62.595	ENSIPUG00000023060	rnaseh1	98	62.595	Ictalurus_punctatus
ENSLBEG00000004480	rnaseh1	97	52.574	ENSSTOG00000012774	RNASEH1	93	52.574	Ictidomys_tridecemlineatus
ENSLBEG00000004480	rnaseh1	86	51.055	ENSJJAG00000020238	Rnaseh1	90	50.633	Jaculus_jaculus
ENSLBEG00000004480	rnaseh1	95	49.035	ENSJJAG00000021481	-	89	48.659	Jaculus_jaculus
ENSLBEG00000004480	rnaseh1	93	44.444	ENSJJAG00000008994	-	89	45.528	Jaculus_jaculus
ENSLBEG00000004480	rnaseh1	97	75.188	ENSKMAG00000001373	rnaseh1	96	70.833	Kryptolebias_marmoratus
ENSLBEG00000004480	rnaseh1	97	54.122	ENSLACG00000007100	RNASEH1	90	54.122	Latimeria_chalumnae
ENSLBEG00000004480	rnaseh1	97	61.091	ENSLOCG00000017212	rnaseh1	99	61.455	Lepisosteus_oculatus
ENSLBEG00000004480	rnaseh1	95	56.154	ENSLAFG00000015091	RNASEH1	90	56.654	Loxodonta_africana
ENSLBEG00000004480	rnaseh1	97	51.128	ENSMFAG00000002323	-	91	51.128	Macaca_fascicularis
ENSLBEG00000004480	rnaseh1	95	53.933	ENSMFAG00000000063	-	98	48.805	Macaca_fascicularis
ENSLBEG00000004480	rnaseh1	97	51.128	ENSMMUG00000019280	-	91	51.128	Macaca_mulatta
ENSLBEG00000004480	rnaseh1	97	50.752	ENSMNEG00000029676	-	91	50.185	Macaca_nemestrina
ENSLBEG00000004480	rnaseh1	95	54.307	ENSMNEG00000040183	-	98	49.147	Macaca_nemestrina
ENSLBEG00000004480	rnaseh1	90	53.846	ENSMLEG00000039352	-	99	55.102	Mandrillus_leucophaeus
ENSLBEG00000004480	rnaseh1	95	52.734	ENSMLEG00000028662	-	91	51.661	Mandrillus_leucophaeus
ENSLBEG00000004480	rnaseh1	97	77.941	ENSMAMG00000019725	rnaseh1	100	73.443	Mastacembelus_armatus
ENSLBEG00000004480	rnaseh1	97	78.623	ENSMZEG00005013006	rnaseh1	100	74.516	Maylandia_zebra
ENSLBEG00000004480	rnaseh1	86	53.878	ENSMGAG00000013979	RNASEH1	99	53.909	Meleagris_gallopavo
ENSLBEG00000004480	rnaseh1	95	53.992	ENSMAUG00000014957	Rnaseh1	90	53.208	Mesocricetus_auratus
ENSLBEG00000004480	rnaseh1	97	53.933	ENSMICG00000033156	RNASEH1	89	54.615	Microcebus_murinus
ENSLBEG00000004480	rnaseh1	95	52.963	ENSMOCG00000015522	Rnaseh1	93	50.173	Microtus_ochrogaster
ENSLBEG00000004480	rnaseh1	98	78.067	ENSMMOG00000015902	rnaseh1	98	75.085	Mola_mola
ENSLBEG00000004480	rnaseh1	85	47.325	ENSMODG00000028814	-	98	49.593	Monodelphis_domestica
ENSLBEG00000004480	rnaseh1	95	54.054	ENSMODG00000014491	-	91	53.383	Monodelphis_domestica
ENSLBEG00000004480	rnaseh1	97	78.967	ENSMALG00000010565	rnaseh1	99	73.443	Monopterus_albus
ENSLBEG00000004480	rnaseh1	97	53.846	MGP_CAROLIEiJ_G0017660	Rnaseh1	96	52.297	Mus_caroli
ENSLBEG00000004480	rnaseh1	97	54.212	ENSMUSG00000020630	Rnaseh1	96	52.650	Mus_musculus
ENSLBEG00000004480	rnaseh1	95	51.550	MGP_PahariEiJ_G0029418	Rnaseh1	96	51.590	Mus_pahari
ENSLBEG00000004480	rnaseh1	97	53.846	MGP_SPRETEiJ_G0018502	Rnaseh1	96	52.297	Mus_spretus
ENSLBEG00000004480	rnaseh1	64	55.682	ENSMPUG00000012984	RNASEH1	86	55.932	Mustela_putorius_furo
ENSLBEG00000004480	rnaseh1	97	52.347	ENSNGAG00000015966	Rnaseh1	86	52.174	Nannospalax_galili
ENSLBEG00000004480	rnaseh1	97	77.899	ENSNBRG00000008739	rnaseh1	100	73.226	Neolamprologus_brichardi
ENSLBEG00000004480	rnaseh1	87	49.789	ENSNLEG00000000059	-	88	49.569	Nomascus_leucogenys
ENSLBEG00000004480	rnaseh1	97	47.292	ENSNLEG00000015400	RNASEH1	89	47.037	Nomascus_leucogenys
ENSLBEG00000004480	rnaseh1	69	42.188	ENSMEUG00000003610	-	65	44.624	Notamacropus_eugenii
ENSLBEG00000004480	rnaseh1	97	50.175	ENSOPRG00000005072	RNASEH1	98	50.175	Ochotona_princeps
ENSLBEG00000004480	rnaseh1	96	55.639	ENSODEG00000000235	Rnaseh1	94	53.091	Octodon_degus
ENSLBEG00000004480	rnaseh1	97	78.261	ENSONIG00000018697	rnaseh1	99	77.536	Oreochromis_niloticus
ENSLBEG00000004480	rnaseh1	97	52.206	ENSOCUG00000006117	RNASEH1	95	51.601	Oryctolagus_cuniculus
ENSLBEG00000004480	rnaseh1	97	77.444	ENSORLG00000018127	rnaseh1	96	77.444	Oryzias_latipes
ENSLBEG00000004480	rnaseh1	97	77.444	ENSORLG00020013660	rnaseh1	99	71.096	Oryzias_latipes_hni
ENSLBEG00000004480	rnaseh1	97	77.444	ENSORLG00015011338	rnaseh1	99	71.096	Oryzias_latipes_hsok
ENSLBEG00000004480	rnaseh1	88	75.620	ENSOMEG00000004710	rnaseh1	99	71.103	Oryzias_melastigma
ENSLBEG00000004480	rnaseh1	95	52.239	ENSOGAG00000017176	RNASEH1	98	48.000	Otolemur_garnettii
ENSLBEG00000004480	rnaseh1	98	46.823	ENSOARG00000005386	RNASEH1	98	46.488	Ovis_aries
ENSLBEG00000004480	rnaseh1	97	53.791	ENSPPAG00000034221	RNASEH1	91	53.430	Pan_paniscus
ENSLBEG00000004480	rnaseh1	98	53.659	ENSPPRG00000015513	RNASEH1	99	53.310	Panthera_pardus
ENSLBEG00000004480	rnaseh1	90	54.054	ENSPTIG00000019034	RNASEH1	85	53.668	Panthera_tigris_altaica
ENSLBEG00000004480	rnaseh1	88	46.825	ENSPTRG00000043403	-	91	46.825	Pan_troglodytes
ENSLBEG00000004480	rnaseh1	97	53.791	ENSPTRG00000011614	RNASEH1	91	53.430	Pan_troglodytes
ENSLBEG00000004480	rnaseh1	97	54.212	ENSPANG00000000443	RNASEH1	98	55.285	Papio_anubis
ENSLBEG00000004480	rnaseh1	97	50.000	ENSPANG00000018246	-	90	49.446	Papio_anubis
ENSLBEG00000004480	rnaseh1	97	61.372	ENSPKIG00000003146	rnaseh1	99	62.030	Paramormyrops_kingsleyae
ENSLBEG00000004480	rnaseh1	97	51.838	ENSPSIG00000002937	RNASEH1	100	50.735	Pelodiscus_sinensis
ENSLBEG00000004480	rnaseh1	98	68.045	ENSPMGG00000017463	rnaseh1	99	67.391	Periophthalmus_magnuspinnatus
ENSLBEG00000004480	rnaseh1	97	51.481	ENSPEMG00000022465	-	93	51.439	Peromyscus_maniculatus_bairdii
ENSLBEG00000004480	rnaseh1	97	53.030	ENSPCIG00000023334	-	90	53.282	Phascolarctos_cinereus
ENSLBEG00000004480	rnaseh1	59	36.585	ENSPCIG00000026047	-	87	36.364	Phascolarctos_cinereus
ENSLBEG00000004480	rnaseh1	97	71.747	ENSPFOG00000002841	rnaseh1	99	66.553	Poecilia_formosa
ENSLBEG00000004480	rnaseh1	73	54.717	ENSPLAG00000021349	-	77	59.788	Poecilia_latipinna
ENSLBEG00000004480	rnaseh1	97	71.747	ENSPMEG00000016826	rnaseh1	99	66.553	Poecilia_mexicana
ENSLBEG00000004480	rnaseh1	97	70.073	ENSPREG00000012197	rnaseh1	99	64.883	Poecilia_reticulata
ENSLBEG00000004480	rnaseh1	97	46.182	ENSPPYG00000025873	RNASEH1	100	45.833	Pongo_abelii
ENSLBEG00000004480	rnaseh1	87	48.988	ENSPPYG00000008067	-	90	48.583	Pongo_abelii
ENSLBEG00000004480	rnaseh1	95	53.462	ENSPCAG00000002500	RNASEH1	90	52.852	Procavia_capensis
ENSLBEG00000004480	rnaseh1	95	49.412	ENSPCOG00000019444	RNASEH1	89	49.612	Propithecus_coquereli
ENSLBEG00000004480	rnaseh1	97	48.944	ENSPVAG00000002070	RNASEH1	98	48.944	Pteropus_vampyrus
ENSLBEG00000004480	rnaseh1	97	77.536	ENSPNYG00000001292	rnaseh1	100	73.871	Pundamilia_nyererei
ENSLBEG00000004480	rnaseh1	97	66.914	ENSPNAG00000022344	rnaseh1	98	63.636	Pygocentrus_nattereri
ENSLBEG00000004480	rnaseh1	98	51.579	ENSRNOG00000008584	Rnaseh1	97	51.370	Rattus_norvegicus
ENSLBEG00000004480	rnaseh1	97	53.069	ENSRBIG00000034222	RNASEH1	99	48.185	Rhinopithecus_bieti
ENSLBEG00000004480	rnaseh1	97	53.069	ENSRROG00000041761	RNASEH1	99	48.185	Rhinopithecus_roxellana
ENSLBEG00000004480	rnaseh1	98	50.000	YMR234W	-	88	50.000	Saccharomyces_cerevisiae
ENSLBEG00000004480	rnaseh1	97	52.313	ENSSBOG00000025411	RNASEH1	99	50.169	Saimiri_boliviensis_boliviensis
ENSLBEG00000004480	rnaseh1	97	53.532	ENSSHAG00000013051	RNASEH1	89	53.731	Sarcophilus_harrisii
ENSLBEG00000004480	rnaseh1	98	60.357	ENSSFOG00015002709	rnaseh1	98	61.511	Scleropages_formosus
ENSLBEG00000004480	rnaseh1	97	81.919	ENSSMAG00000007586	rnaseh1	99	76.898	Scophthalmus_maximus
ENSLBEG00000004480	rnaseh1	97	81.852	ENSSDUG00000008217	rnaseh1	98	79.783	Seriola_dumerili
ENSLBEG00000004480	rnaseh1	90	81.600	ENSSLDG00000000442	rnaseh1	95	80.709	Seriola_lalandi_dorsalis
ENSLBEG00000004480	rnaseh1	96	51.471	ENSSPUG00000006644	RNASEH1	93	51.471	Sphenodon_punctatus
ENSLBEG00000004480	rnaseh1	97	78.967	ENSSPAG00000009353	rnaseh1	99	77.000	Stegastes_partitus
ENSLBEG00000004480	rnaseh1	95	53.612	ENSSSCG00000025305	RNASEH1	98	52.098	Sus_scrofa
ENSLBEG00000004480	rnaseh1	97	53.571	ENSTGUG00000012980	RNASEH1	94	53.929	Taeniopygia_guttata
ENSLBEG00000004480	rnaseh1	97	72.426	ENSTRUG00000015774	rnaseh1	97	72.426	Takifugu_rubripes
ENSLBEG00000004480	rnaseh1	97	75.836	ENSTNIG00000010715	rnaseh1	97	75.836	Tetraodon_nigroviridis
ENSLBEG00000004480	rnaseh1	98	50.175	ENSTTRG00000001615	RNASEH1	98	49.825	Tursiops_truncatus
ENSLBEG00000004480	rnaseh1	58	60.377	ENSUAMG00000018254	RNASEH1	80	60.377	Ursus_americanus
ENSLBEG00000004480	rnaseh1	73	53.266	ENSUMAG00000003941	RNASEH1	65	53.266	Ursus_maritimus
ENSLBEG00000004480	rnaseh1	97	46.316	ENSVPAG00000011589	RNASEH1	98	45.965	Vicugna_pacos
ENSLBEG00000004480	rnaseh1	97	53.704	ENSVVUG00000008633	RNASEH1	89	50.842	Vulpes_vulpes
ENSLBEG00000004480	rnaseh1	95	38.281	ENSXETG00000030371	-	97	46.809	Xenopus_tropicalis
ENSLBEG00000004480	rnaseh1	96	52.963	ENSXETG00000001212	rnaseh1	95	51.773	Xenopus_tropicalis
ENSLBEG00000004480	rnaseh1	97	72.015	ENSXMAG00000002357	rnaseh1	99	66.781	Xiphophorus_maculatus