EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000004578 (Gene tree)
Gene ID: 109978903
Gene Symbol: -
Alias: -
Full Name: RNA-binding protein 42-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 5184 bases
Position: chrFKLU01007594.1:6080-11263
Accession: 109978903
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000005962	RRM_1	PF00076.22	8.8e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000006263	-	2362	XM_020628078	ENSLBEP00000005962	357 (aa)	XP_020483734	-

Gene Model

Click here to download ENSLBEG00000004578's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000004578's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000004578	-	96	99.128	ENSLBEG00000017547	rbm42	85	99.128

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000004578	-	96	81.503	ENSAPOG00000015109	rbm42	84	84.104	Acanthochromis_polyacanthus
ENSLBEG00000004578	-	96	79.009	ENSACIG00000010771	rbm42	84	79.009	Amphilophus_citrinellus
ENSLBEG00000004578	-	96	82.948	ENSAOCG00000008873	rbm42	84	82.948	Amphiprion_ocellaris
ENSLBEG00000004578	-	96	82.948	ENSAPEG00000012051	rbm42	83	82.948	Amphiprion_percula
ENSLBEG00000004578	-	96	82.659	ENSATEG00000000536	rbm42	85	81.792	Anabas_testudineus
ENSLBEG00000004578	-	96	82.471	ENSACLG00000004988	rbm42	84	81.159	Astatotilapia_calliptera
ENSLBEG00000004578	-	96	71.629	ENSAMXG00000016545	rbm42	85	71.388	Astyanax_mexicanus
ENSLBEG00000004578	-	96	80.114	ENSCSEG00000010248	rbm42	87	80.802	Cynoglossus_semilaevis
ENSLBEG00000004578	-	96	77.208	ENSCVAG00000015589	rbm42	85	76.571	Cyprinodon_variegatus
ENSLBEG00000004578	-	96	67.507	ENSDARG00000039910	rbm42	85	70.893	Danio_rerio
ENSLBEG00000004578	-	96	71.154	ENSELUG00000022403	rbm42	85	66.398	Esox_lucius
ENSLBEG00000004578	-	73	77.903	ENSFHEG00000006764	rbm42	91	77.656	Fundulus_heteroclitus
ENSLBEG00000004578	-	96	70.255	ENSGMOG00000012660	rbm42	86	73.889	Gadus_morhua
ENSLBEG00000004578	-	87	74.841	ENSGAFG00000009059	rbm42	100	77.143	Gambusia_affinis
ENSLBEG00000004578	-	96	86.006	ENSGACG00000004170	rbm42	84	86.006	Gasterosteus_aculeatus
ENSLBEG00000004578	-	96	82.184	ENSHBUG00000011141	rbm42	84	80.870	Haplochromis_burtoni
ENSLBEG00000004578	-	96	76.504	ENSHCOG00000021214	rbm42	84	73.219	Hippocampus_comes
ENSLBEG00000004578	-	96	71.067	ENSIPUG00000022365	rbm42	84	66.120	Ictalurus_punctatus
ENSLBEG00000004578	-	85	75.000	ENSKMAG00000015287	rbm42	83	73.077	Kryptolebias_marmoratus
ENSLBEG00000004578	-	96	68.946	ENSLOCG00000003368	rbm42	83	66.952	Lepisosteus_oculatus
ENSLBEG00000004578	-	96	81.503	ENSMAMG00000006708	rbm42	84	81.503	Mastacembelus_armatus
ENSLBEG00000004578	-	96	82.471	ENSMZEG00005025234	rbm42	84	81.159	Maylandia_zebra
ENSLBEG00000004578	-	96	83.095	ENSMALG00000015720	rbm42	93	83.526	Monopterus_albus
ENSLBEG00000004578	-	96	82.471	ENSONIG00000008029	rbm42	85	81.034	Oreochromis_niloticus
ENSLBEG00000004578	-	86	65.147	ENSORLG00020022507	rbm42	72	65.000	Oryzias_latipes_hni
ENSLBEG00000004578	-	96	74.566	ENSORLG00015000659	rbm42	84	76.812	Oryzias_latipes_hsok
ENSLBEG00000004578	-	71	81.250	ENSOMEG00000014332	rbm42	81	89.767	Oryzias_melastigma
ENSLBEG00000004578	-	96	69.944	ENSPKIG00000015165	rbm42	85	69.296	Paramormyrops_kingsleyae
ENSLBEG00000004578	-	73	65.918	ENSPMGG00000003569	rbm42	55	97.143	Periophthalmus_magnuspinnatus
ENSLBEG00000004578	-	59	57.604	ENSPMAG00000008633	rbm42	98	49.157	Petromyzon_marinus
ENSLBEG00000004578	-	96	75.575	ENSPFOG00000007701	rbm42	85	77.937	Poecilia_formosa
ENSLBEG00000004578	-	96	75.575	ENSPLAG00000009405	rbm42	85	77.937	Poecilia_latipinna
ENSLBEG00000004578	-	96	75.862	ENSPMEG00000010375	rbm42	85	78.223	Poecilia_mexicana
ENSLBEG00000004578	-	96	75.862	ENSPREG00000018102	rbm42	87	78.223	Poecilia_reticulata
ENSLBEG00000004578	-	96	82.184	ENSPNYG00000014460	rbm42	84	80.870	Pundamilia_nyererei
ENSLBEG00000004578	-	96	71.429	ENSPNAG00000009961	rbm42	85	69.663	Pygocentrus_nattereri
ENSLBEG00000004578	-	96	69.505	ENSSFOG00015019227	rbm42	84	67.797	Scleropages_formosus
ENSLBEG00000004578	-	96	83.429	ENSSMAG00000011935	rbm42	84	84.438	Scophthalmus_maximus
ENSLBEG00000004578	-	96	86.416	ENSSDUG00000004033	rbm42	84	85.838	Seriola_dumerili
ENSLBEG00000004578	-	83	85.906	ENSSLDG00000009918	rbm42	79	85.906	Seriola_lalandi_dorsalis
ENSLBEG00000004578	-	96	83.237	ENSSPAG00000019871	rbm42	84	83.237	Stegastes_partitus
ENSLBEG00000004578	-	96	76.968	ENSTRUG00000024586	-	64	79.240	Takifugu_rubripes
ENSLBEG00000004578	-	96	66.406	ENSTNIG00000011669	rbm42	86	65.116	Tetraodon_nigroviridis
ENSLBEG00000004578	-	96	56.378	ENSXETG00000017599	rbm42	87	57.412	Xenopus_tropicalis
ENSLBEG00000004578	-	96	75.000	ENSXMAG00000012827	rbm42	85	77.364	Xiphophorus_maculatus