EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000004598 (Gene tree)
Gene ID: 109981915
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 4864 bases
Position: chrFKLU01000037.1:2275788-2280651
Accession: 109981915
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000005989	SMN	PF06003.12	2.1e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000006290	-	901	XM_020630905	ENSLBEP00000005989	237 (aa)	XP_020486561	UPI0009B36E20

Gene Model

Click here to download ENSLBEG00000004598's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000004598's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000004598	smndc1	100	74.790	ENSG00000119953	SMNDC1	100	74.790	Homo_sapiens
ENSLBEG00000004598	smndc1	100	90.756	ENSAPOG00000021772	smndc1	100	90.756	Acanthochromis_polyacanthus
ENSLBEG00000004598	smndc1	100	74.790	ENSAMEG00000005251	SMNDC1	100	74.790	Ailuropoda_melanoleuca
ENSLBEG00000004598	smndc1	100	89.076	ENSACIG00000004819	smndc1	100	89.076	Amphilophus_citrinellus
ENSLBEG00000004598	smndc1	100	90.336	ENSAOCG00000017869	smndc1	100	90.336	Amphiprion_ocellaris
ENSLBEG00000004598	smndc1	100	90.336	ENSAPEG00000007752	smndc1	100	90.336	Amphiprion_percula
ENSLBEG00000004598	smndc1	100	89.496	ENSATEG00000006830	smndc1	100	89.496	Anabas_testudineus
ENSLBEG00000004598	smndc1	83	74.242	ENSAPLG00000004322	SMNDC1	100	74.242	Anas_platyrhynchos
ENSLBEG00000004598	smndc1	100	76.050	ENSACAG00000005983	SMNDC1	100	76.050	Anolis_carolinensis
ENSLBEG00000004598	smndc1	100	74.790	ENSANAG00000032875	SMNDC1	100	74.790	Aotus_nancymaae
ENSLBEG00000004598	smndc1	100	87.395	ENSACLG00000016360	smndc1	100	87.395	Astatotilapia_calliptera
ENSLBEG00000004598	smndc1	100	79.747	ENSAMXG00000020310	smndc1	100	79.747	Astyanax_mexicanus
ENSLBEG00000004598	smndc1	100	76.569	ENSBTAG00000000551	SMNDC1	100	76.569	Bos_taurus
ENSLBEG00000004598	smndc1	100	74.790	ENSCJAG00000018624	SMNDC1	100	74.790	Callithrix_jacchus
ENSLBEG00000004598	smndc1	100	74.790	ENSCAFG00000010720	SMNDC1	100	74.790	Canis_familiaris
ENSLBEG00000004598	smndc1	100	74.790	ENSCAFG00020011913	SMNDC1	100	74.790	Canis_lupus_dingo
ENSLBEG00000004598	smndc1	100	76.569	ENSCHIG00000010604	SMNDC1	100	76.569	Capra_hircus
ENSLBEG00000004598	smndc1	100	74.790	ENSTSYG00000026454	SMNDC1	100	74.790	Carlito_syrichta
ENSLBEG00000004598	smndc1	100	61.250	ENSCAPG00000009132	SMNDC1	100	71.144	Cavia_aperea
ENSLBEG00000004598	smndc1	100	74.790	ENSCPOG00000031666	SMNDC1	100	74.790	Cavia_porcellus
ENSLBEG00000004598	smndc1	100	74.790	ENSCCAG00000021793	SMNDC1	100	74.790	Cebus_capucinus
ENSLBEG00000004598	smndc1	100	74.370	ENSCATG00000035910	SMNDC1	100	74.370	Cercocebus_atys
ENSLBEG00000004598	smndc1	100	74.790	ENSCLAG00000002838	SMNDC1	100	74.790	Chinchilla_lanigera
ENSLBEG00000004598	smndc1	100	74.790	ENSCSAG00000005169	SMNDC1	100	74.790	Chlorocebus_sabaeus
ENSLBEG00000004598	smndc1	81	69.948	ENSCHOG00000002936	SMNDC1	100	69.948	Choloepus_hoffmanni
ENSLBEG00000004598	smndc1	100	74.790	ENSCPBG00000012837	SMNDC1	100	74.790	Chrysemys_picta_bellii
ENSLBEG00000004598	smndc1	100	69.874	ENSCANG00000034620	-	100	69.874	Colobus_angolensis_palliatus
ENSLBEG00000004598	smndc1	100	59.244	ENSCANG00000036994	-	100	59.244	Colobus_angolensis_palliatus
ENSLBEG00000004598	smndc1	100	74.790	ENSCANG00000031720	-	100	74.790	Colobus_angolensis_palliatus
ENSLBEG00000004598	smndc1	100	74.370	ENSCGRG00001012973	Smndc1	100	74.370	Cricetulus_griseus_chok1gshd
ENSLBEG00000004598	smndc1	100	74.370	ENSCGRG00000012396	Smndc1	100	74.370	Cricetulus_griseus_crigri
ENSLBEG00000004598	smndc1	100	84.810	ENSCSEG00000015621	smndc1	100	84.810	Cynoglossus_semilaevis
ENSLBEG00000004598	smndc1	100	86.555	ENSCVAG00000020432	smndc1	100	86.555	Cyprinodon_variegatus
ENSLBEG00000004598	smndc1	100	80.591	ENSDARG00000056235	smndc1	100	80.591	Danio_rerio
ENSLBEG00000004598	smndc1	100	74.790	ENSDNOG00000016387	SMNDC1	83	74.790	Dasypus_novemcinctus
ENSLBEG00000004598	smndc1	100	74.790	ENSDORG00000023715	Smndc1	100	74.790	Dipodomys_ordii
ENSLBEG00000004598	smndc1	93	40.164	FBgn0039977	CG17454	97	41.803	Drosophila_melanogaster
ENSLBEG00000004598	smndc1	100	68.050	ENSEBUG00000010929	smndc1	100	68.724	Eptatretus_burgeri
ENSLBEG00000004598	smndc1	100	74.790	ENSEASG00005014930	SMNDC1	100	74.790	Equus_asinus_asinus
ENSLBEG00000004598	smndc1	100	74.790	ENSECAG00000029973	SMNDC1	100	74.790	Equus_caballus
ENSLBEG00000004598	smndc1	83	51.010	ENSEEUG00000013407	-	100	51.010	Erinaceus_europaeus
ENSLBEG00000004598	smndc1	100	83.122	ENSELUG00000000227	smndc1	100	83.122	Esox_lucius
ENSLBEG00000004598	smndc1	100	74.790	ENSFCAG00000027353	SMNDC1	100	74.790	Felis_catus
ENSLBEG00000004598	smndc1	100	75.630	ENSFALG00000002306	SMNDC1	100	75.630	Ficedula_albicollis
ENSLBEG00000004598	smndc1	100	74.790	ENSFDAG00000006468	SMNDC1	100	74.790	Fukomys_damarensis
ENSLBEG00000004598	smndc1	100	87.815	ENSFHEG00000020150	smndc1	100	87.815	Fundulus_heteroclitus
ENSLBEG00000004598	smndc1	100	82.700	ENSGMOG00000016585	smndc1	100	82.700	Gadus_morhua
ENSLBEG00000004598	smndc1	100	75.630	ENSGALG00000008561	SMNDC1	100	75.630	Gallus_gallus
ENSLBEG00000004598	smndc1	100	89.916	ENSGAFG00000011582	smndc1	100	89.916	Gambusia_affinis
ENSLBEG00000004598	smndc1	100	89.496	ENSGACG00000009468	smndc1	100	89.496	Gasterosteus_aculeatus
ENSLBEG00000004598	smndc1	100	74.790	ENSGAGG00000024547	SMNDC1	100	74.790	Gopherus_agassizii
ENSLBEG00000004598	smndc1	100	74.790	ENSGGOG00000010071	SMNDC1	100	74.790	Gorilla_gorilla
ENSLBEG00000004598	smndc1	100	87.395	ENSHBUG00000017596	smndc1	100	87.395	Haplochromis_burtoni
ENSLBEG00000004598	smndc1	100	54.918	ENSHGLG00000001157	-	100	55.328	Heterocephalus_glaber_female
ENSLBEG00000004598	smndc1	100	74.790	ENSHGLG00000013390	-	100	74.790	Heterocephalus_glaber_female
ENSLBEG00000004598	smndc1	100	74.790	ENSHGLG00100004814	-	100	74.790	Heterocephalus_glaber_male
ENSLBEG00000004598	smndc1	100	60.408	ENSHGLG00100004278	-	100	59.839	Heterocephalus_glaber_male
ENSLBEG00000004598	smndc1	100	85.356	ENSHCOG00000000783	smndc1	100	85.356	Hippocampus_comes
ENSLBEG00000004598	smndc1	100	80.591	ENSIPUG00000004217	smndc1	100	80.591	Ictalurus_punctatus
ENSLBEG00000004598	smndc1	100	74.790	ENSSTOG00000006088	SMNDC1	100	74.790	Ictidomys_tridecemlineatus
ENSLBEG00000004598	smndc1	100	74.790	ENSJJAG00000019974	Smndc1	100	74.790	Jaculus_jaculus
ENSLBEG00000004598	smndc1	100	87.815	ENSKMAG00000020134	smndc1	100	87.815	Kryptolebias_marmoratus
ENSLBEG00000004598	smndc1	100	76.891	ENSLACG00000007784	SMNDC1	100	76.891	Latimeria_chalumnae
ENSLBEG00000004598	smndc1	100	80.169	ENSLOCG00000012355	smndc1	100	80.169	Lepisosteus_oculatus
ENSLBEG00000004598	smndc1	100	74.370	ENSLAFG00000014353	SMNDC1	100	74.370	Loxodonta_africana
ENSLBEG00000004598	smndc1	100	74.790	ENSMFAG00000002433	-	100	74.790	Macaca_fascicularis
ENSLBEG00000004598	smndc1	100	64.135	ENSMFAG00000038381	-	100	64.135	Macaca_fascicularis
ENSLBEG00000004598	smndc1	100	64.135	ENSMMUG00000045875	-	100	64.135	Macaca_mulatta
ENSLBEG00000004598	smndc1	100	74.790	ENSMMUG00000007775	SMNDC1	100	74.790	Macaca_mulatta
ENSLBEG00000004598	smndc1	100	65.546	ENSMNEG00000033853	-	100	65.546	Macaca_nemestrina
ENSLBEG00000004598	smndc1	100	74.790	ENSMNEG00000042963	-	100	74.790	Macaca_nemestrina
ENSLBEG00000004598	smndc1	100	70.248	ENSMLEG00000040236	SMNDC1	100	69.874	Mandrillus_leucophaeus
ENSLBEG00000004598	smndc1	89	85.915	ENSMAMG00000018233	smndc1	87	85.915	Mastacembelus_armatus
ENSLBEG00000004598	smndc1	100	87.395	ENSMZEG00005027510	smndc1	100	87.395	Maylandia_zebra
ENSLBEG00000004598	smndc1	84	74.500	ENSMGAG00000010777	SMNDC1	84	74.500	Meleagris_gallopavo
ENSLBEG00000004598	smndc1	100	74.790	ENSMAUG00000012243	-	100	74.790	Mesocricetus_auratus
ENSLBEG00000004598	smndc1	99	61.864	ENSMAUG00000005459	-	93	62.025	Mesocricetus_auratus
ENSLBEG00000004598	smndc1	100	74.370	ENSMICG00000027336	-	100	74.370	Microcebus_murinus
ENSLBEG00000004598	smndc1	100	64.557	ENSMICG00000031640	-	100	64.557	Microcebus_murinus
ENSLBEG00000004598	smndc1	100	74.370	ENSMOCG00000002458	Smndc1	100	74.370	Microtus_ochrogaster
ENSLBEG00000004598	smndc1	100	89.076	ENSMMOG00000008856	smndc1	100	89.076	Mola_mola
ENSLBEG00000004598	smndc1	100	74.790	ENSMODG00000010542	SMNDC1	100	74.790	Monodelphis_domestica
ENSLBEG00000004598	smndc1	100	87.815	ENSMALG00000017598	smndc1	100	87.815	Monopterus_albus
ENSLBEG00000004598	smndc1	100	74.370	MGP_CAROLIEiJ_G0023072	Smndc1	100	74.370	Mus_caroli
ENSLBEG00000004598	smndc1	100	74.370	ENSMUSG00000025024	Smndc1	100	74.370	Mus_musculus
ENSLBEG00000004598	smndc1	100	74.370	MGP_PahariEiJ_G0014560	Smndc1	100	74.370	Mus_pahari
ENSLBEG00000004598	smndc1	100	74.370	MGP_SPRETEiJ_G0023993	Smndc1	100	74.370	Mus_spretus
ENSLBEG00000004598	smndc1	100	74.790	ENSMPUG00000002089	SMNDC1	100	74.790	Mustela_putorius_furo
ENSLBEG00000004598	smndc1	100	74.790	ENSMLUG00000016007	SMNDC1	100	74.790	Myotis_lucifugus
ENSLBEG00000004598	smndc1	100	75.210	ENSNGAG00000006833	Smndc1	100	75.210	Nannospalax_galili
ENSLBEG00000004598	smndc1	100	87.815	ENSNBRG00000017089	smndc1	100	87.815	Neolamprologus_brichardi
ENSLBEG00000004598	smndc1	100	74.790	ENSNLEG00000015471	SMNDC1	100	74.790	Nomascus_leucogenys
ENSLBEG00000004598	smndc1	70	60.000	ENSMEUG00000010120	-	98	53.807	Notamacropus_eugenii
ENSLBEG00000004598	smndc1	100	74.790	ENSOPRG00000015348	SMNDC1	100	74.790	Ochotona_princeps
ENSLBEG00000004598	smndc1	100	54.852	ENSODEG00000007594	-	100	53.165	Octodon_degus
ENSLBEG00000004598	smndc1	100	87.815	ENSONIG00000000434	smndc1	100	87.815	Oreochromis_niloticus
ENSLBEG00000004598	smndc1	100	74.790	ENSOANG00000001598	SMNDC1	100	74.790	Ornithorhynchus_anatinus
ENSLBEG00000004598	smndc1	100	55.274	ENSOCUG00000012274	-	100	56.962	Oryctolagus_cuniculus
ENSLBEG00000004598	smndc1	100	74.790	ENSOCUG00000008145	-	100	74.790	Oryctolagus_cuniculus
ENSLBEG00000004598	smndc1	100	82.353	ENSORLG00000005934	smndc1	95	82.353	Oryzias_latipes
ENSLBEG00000004598	smndc1	100	82.353	ENSORLG00020008796	smndc1	95	82.353	Oryzias_latipes_hni
ENSLBEG00000004598	smndc1	100	81.933	ENSORLG00015013666	smndc1	100	81.933	Oryzias_latipes_hsok
ENSLBEG00000004598	smndc1	100	80.591	ENSOMEG00000007590	smndc1	100	80.591	Oryzias_melastigma
ENSLBEG00000004598	smndc1	100	76.569	ENSOGAG00000000571	SMNDC1	100	76.569	Otolemur_garnettii
ENSLBEG00000004598	smndc1	100	76.569	ENSOARG00000009500	SMNDC1	100	76.569	Ovis_aries
ENSLBEG00000004598	smndc1	100	74.790	ENSPPAG00000027815	SMNDC1	100	74.790	Pan_paniscus
ENSLBEG00000004598	smndc1	100	74.790	ENSPPRG00000013749	SMNDC1	100	74.790	Panthera_pardus
ENSLBEG00000004598	smndc1	100	74.790	ENSPTIG00000011451	SMNDC1	100	74.790	Panthera_tigris_altaica
ENSLBEG00000004598	smndc1	100	74.790	ENSPTRG00000002937	SMNDC1	100	74.790	Pan_troglodytes
ENSLBEG00000004598	smndc1	100	70.886	ENSPANG00000031346	-	100	70.886	Papio_anubis
ENSLBEG00000004598	smndc1	100	74.790	ENSPANG00000020805	-	100	74.790	Papio_anubis
ENSLBEG00000004598	smndc1	100	78.903	ENSPKIG00000017164	smndc1	100	78.903	Paramormyrops_kingsleyae
ENSLBEG00000004598	smndc1	100	74.790	ENSPSIG00000012257	SMNDC1	100	74.790	Pelodiscus_sinensis
ENSLBEG00000004598	smndc1	100	80.591	ENSPMGG00000015651	smndc1	100	80.591	Periophthalmus_magnuspinnatus
ENSLBEG00000004598	smndc1	100	74.790	ENSPEMG00000022058	Smndc1	100	74.790	Peromyscus_maniculatus_bairdii
ENSLBEG00000004598	smndc1	100	65.560	ENSPMAG00000007705	smndc1	100	65.560	Petromyzon_marinus
ENSLBEG00000004598	smndc1	100	74.790	ENSPCIG00000018419	SMNDC1	100	74.790	Phascolarctos_cinereus
ENSLBEG00000004598	smndc1	95	57.778	ENSPCIG00000009693	-	98	57.778	Phascolarctos_cinereus
ENSLBEG00000004598	smndc1	100	89.496	ENSPFOG00000017113	smndc1	100	89.496	Poecilia_formosa
ENSLBEG00000004598	smndc1	100	89.076	ENSPLAG00000010372	smndc1	100	89.076	Poecilia_latipinna
ENSLBEG00000004598	smndc1	100	89.076	ENSPMEG00000012288	smndc1	100	89.076	Poecilia_mexicana
ENSLBEG00000004598	smndc1	100	87.395	ENSPREG00000012279	smndc1	100	87.395	Poecilia_reticulata
ENSLBEG00000004598	smndc1	100	74.790	ENSPPYG00000002643	SMNDC1	100	74.790	Pongo_abelii
ENSLBEG00000004598	smndc1	81	69.948	ENSPCAG00000016183	SMNDC1	100	69.948	Procavia_capensis
ENSLBEG00000004598	smndc1	100	74.370	ENSPCOG00000024343	SMNDC1	100	74.370	Propithecus_coquereli
ENSLBEG00000004598	smndc1	100	57.143	ENSPVAG00000004368	SMNDC1	100	57.143	Pteropus_vampyrus
ENSLBEG00000004598	smndc1	83	86.364	ENSPNYG00000024093	smndc1	86	86.364	Pundamilia_nyererei
ENSLBEG00000004598	smndc1	100	78.903	ENSPNAG00000025285	smndc1	100	78.903	Pygocentrus_nattereri
ENSLBEG00000004598	smndc1	100	74.370	ENSRNOG00000014833	Smndc1	100	74.370	Rattus_norvegicus
ENSLBEG00000004598	smndc1	100	61.603	ENSRBIG00000032452	-	100	61.603	Rhinopithecus_bieti
ENSLBEG00000004598	smndc1	100	74.370	ENSRBIG00000000224	-	100	74.370	Rhinopithecus_bieti
ENSLBEG00000004598	smndc1	100	74.790	ENSRROG00000044992	-	100	74.790	Rhinopithecus_roxellana
ENSLBEG00000004598	smndc1	100	61.603	ENSRROG00000039125	-	100	61.603	Rhinopithecus_roxellana
ENSLBEG00000004598	smndc1	100	74.790	ENSSBOG00000026789	SMNDC1	100	74.790	Saimiri_boliviensis_boliviensis
ENSLBEG00000004598	smndc1	100	74.790	ENSSHAG00000015189	SMNDC1	100	74.790	Sarcophilus_harrisii
ENSLBEG00000004598	smndc1	100	76.793	ENSSFOG00015008311	smndc1	100	76.793	Scleropages_formosus
ENSLBEG00000004598	smndc1	100	90.756	ENSSMAG00000020118	smndc1	100	90.756	Scophthalmus_maximus
ENSLBEG00000004598	smndc1	100	90.756	ENSSDUG00000015330	smndc1	100	90.756	Seriola_dumerili
ENSLBEG00000004598	smndc1	100	91.176	ENSSLDG00000017325	smndc1	100	91.176	Seriola_lalandi_dorsalis
ENSLBEG00000004598	smndc1	100	74.790	ENSSARG00000006063	SMNDC1	100	74.790	Sorex_araneus
ENSLBEG00000004598	smndc1	100	75.630	ENSSPUG00000004574	SMNDC1	100	75.630	Sphenodon_punctatus
ENSLBEG00000004598	smndc1	100	91.597	ENSSPAG00000000338	smndc1	100	91.597	Stegastes_partitus
ENSLBEG00000004598	smndc1	100	74.790	ENSSSCG00000030507	SMNDC1	100	74.790	Sus_scrofa
ENSLBEG00000004598	smndc1	100	75.630	ENSTGUG00000010599	SMNDC1	100	75.630	Taeniopygia_guttata
ENSLBEG00000004598	smndc1	100	83.613	ENSTRUG00000023281	smndc1	100	83.613	Takifugu_rubripes
ENSLBEG00000004598	smndc1	100	83.613	ENSTNIG00000013331	smndc1	100	83.613	Tetraodon_nigroviridis
ENSLBEG00000004598	smndc1	100	74.790	ENSTBEG00000014337	SMNDC1	100	74.790	Tupaia_belangeri
ENSLBEG00000004598	smndc1	100	74.790	ENSUAMG00000008142	SMNDC1	100	74.790	Ursus_americanus
ENSLBEG00000004598	smndc1	100	74.790	ENSUMAG00000023722	SMNDC1	100	74.790	Ursus_maritimus
ENSLBEG00000004598	smndc1	83	73.737	ENSVPAG00000003402	SMNDC1	100	73.737	Vicugna_pacos
ENSLBEG00000004598	smndc1	100	74.790	ENSVVUG00000007820	SMNDC1	100	74.790	Vulpes_vulpes
ENSLBEG00000004598	smndc1	59	61.268	ENSXETG00000015415	SMNDC1	100	61.268	Xenopus_tropicalis
ENSLBEG00000004598	smndc1	100	88.608	ENSXCOG00000009159	smndc1	100	88.608	Xiphophorus_couchianus
ENSLBEG00000004598	smndc1	100	89.076	ENSXMAG00000012755	smndc1	100	89.076	Xiphophorus_maculatus