EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000005203 (Gene tree)
Gene ID: 109987771
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 3272 bases
Position: chrFKLU01000123.1:474253-477524
Accession: 109987771
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000006737	LSM	PF01423.22	1.2e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000007076	-	1177	XM_020638986	ENSLBEP00000006737	103 (aa)	XP_020494642	UPI0009B3AABB

Gene Model

Click here to download ENSLBEG00000005203's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000005203's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000005203	lsm7	66	39.706	ENSLBEG00000016516	snrpg	80	39.706

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000005203	lsm7	100	94.175	ENSG00000130332	LSM7	100	95.918	Homo_sapiens
ENSLBEG00000005203	lsm7	91	100.000	ENSAPOG00000015573	lsm7	81	100.000	Acanthochromis_polyacanthus
ENSLBEG00000005203	lsm7	100	92.233	ENSAMEG00000005484	LSM7	100	92.233	Ailuropoda_melanoleuca
ENSLBEG00000005203	lsm7	95	97.959	ENSACIG00000006498	lsm7	78	97.959	Amphilophus_citrinellus
ENSLBEG00000005203	lsm7	98	100.000	ENSAOCG00000001077	lsm7	92	100.000	Amphiprion_ocellaris
ENSLBEG00000005203	lsm7	100	99.029	ENSAPEG00000000694	lsm7	100	99.029	Amphiprion_percula
ENSLBEG00000005203	lsm7	100	98.058	ENSAPEG00000024447	lsm7	92	100.000	Amphiprion_percula
ENSLBEG00000005203	lsm7	100	99.029	ENSATEG00000008557	lsm7	100	99.029	Anabas_testudineus
ENSLBEG00000005203	lsm7	100	85.437	ENSANAG00000022222	-	100	85.437	Aotus_nancymaae
ENSLBEG00000005203	lsm7	100	94.175	ENSANAG00000037196	-	100	94.175	Aotus_nancymaae
ENSLBEG00000005203	lsm7	100	98.058	ENSACLG00000021021	lsm7	100	98.058	Astatotilapia_calliptera
ENSLBEG00000005203	lsm7	100	97.087	ENSAMXG00000037622	lsm7	100	97.087	Astyanax_mexicanus
ENSLBEG00000005203	lsm7	100	94.175	ENSBTAG00000004521	LSM7	100	94.175	Bos_taurus
ENSLBEG00000005203	lsm7	97	58.000	WBGene00003081	lsm-7	96	58.000	Caenorhabditis_elegans
ENSLBEG00000005203	lsm7	69	76.056	ENSCJAG00000039713	-	87	76.056	Callithrix_jacchus
ENSLBEG00000005203	lsm7	98	94.059	ENSCAFG00000019409	LSM7	98	94.059	Canis_familiaris
ENSLBEG00000005203	lsm7	98	94.059	ENSCAFG00020018168	LSM7	74	95.000	Canis_lupus_dingo
ENSLBEG00000005203	lsm7	100	93.204	ENSCHIG00000023663	LSM7	100	93.204	Capra_hircus
ENSLBEG00000005203	lsm7	69	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSLBEG00000005203	lsm7	100	94.175	ENSCPOG00000014025	LSM7	100	95.050	Cavia_porcellus
ENSLBEG00000005203	lsm7	98	95.050	ENSCCAG00000035456	LSM7	99	95.050	Cebus_capucinus
ENSLBEG00000005203	lsm7	100	94.175	ENSCATG00000023543	LSM7	100	94.175	Cercocebus_atys
ENSLBEG00000005203	lsm7	100	94.175	ENSCLAG00000011635	LSM7	100	94.175	Chinchilla_lanigera
ENSLBEG00000005203	lsm7	100	94.175	ENSCSAG00000011599	LSM7	100	94.175	Chlorocebus_sabaeus
ENSLBEG00000005203	lsm7	70	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSLBEG00000005203	lsm7	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSLBEG00000005203	lsm7	100	94.175	ENSCANG00000035525	LSM7	100	94.175	Colobus_angolensis_palliatus
ENSLBEG00000005203	lsm7	100	93.204	ENSCGRG00001000807	-	100	93.204	Cricetulus_griseus_chok1gshd
ENSLBEG00000005203	lsm7	87	84.444	ENSCGRG00001016005	-	92	84.444	Cricetulus_griseus_chok1gshd
ENSLBEG00000005203	lsm7	98	94.059	ENSCGRG00000014355	-	97	94.059	Cricetulus_griseus_crigri
ENSLBEG00000005203	lsm7	87	84.444	ENSCGRG00000006821	-	92	84.444	Cricetulus_griseus_crigri
ENSLBEG00000005203	lsm7	99	99.020	ENSCSEG00000014900	lsm7	86	100.000	Cynoglossus_semilaevis
ENSLBEG00000005203	lsm7	99	98.039	ENSCVAG00000021091	lsm7	94	98.039	Cyprinodon_variegatus
ENSLBEG00000005203	lsm7	100	96.117	ENSDARG00000058328	lsm7	100	96.117	Danio_rerio
ENSLBEG00000005203	lsm7	99	92.157	ENSDORG00000024460	Lsm7	100	92.157	Dipodomys_ordii
ENSLBEG00000005203	lsm7	94	73.469	FBgn0261068	LSm7	89	73.469	Drosophila_melanogaster
ENSLBEG00000005203	lsm7	98	92.079	ENSETEG00000012788	LSM7	99	92.079	Echinops_telfairi
ENSLBEG00000005203	lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSLBEG00000005203	lsm7	100	83.495	ENSEBUG00000016992	lsm7	99	83.495	Eptatretus_burgeri
ENSLBEG00000005203	lsm7	100	90.291	ENSECAG00000001440	LSM7	66	90.291	Equus_caballus
ENSLBEG00000005203	lsm7	100	93.204	ENSFCAG00000003445	LSM7	100	93.204	Felis_catus
ENSLBEG00000005203	lsm7	98	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSLBEG00000005203	lsm7	93	94.792	ENSFDAG00000007661	LSM7	100	94.792	Fukomys_damarensis
ENSLBEG00000005203	lsm7	98	99.010	ENSFHEG00000006349	lsm7	90	99.010	Fundulus_heteroclitus
ENSLBEG00000005203	lsm7	100	96.117	ENSGMOG00000013320	lsm7	100	96.117	Gadus_morhua
ENSLBEG00000005203	lsm7	100	98.058	ENSGAFG00000013902	lsm7	100	98.058	Gambusia_affinis
ENSLBEG00000005203	lsm7	100	97.087	ENSGACG00000010390	lsm7	100	97.087	Gasterosteus_aculeatus
ENSLBEG00000005203	lsm7	100	94.175	ENSGGOG00000010172	LSM7	100	94.175	Gorilla_gorilla
ENSLBEG00000005203	lsm7	100	98.058	ENSHBUG00000004616	lsm7	100	98.058	Haplochromis_burtoni
ENSLBEG00000005203	lsm7	100	94.175	ENSHGLG00000010587	LSM7	100	94.175	Heterocephalus_glaber_female
ENSLBEG00000005203	lsm7	100	94.175	ENSHGLG00100000852	LSM7	100	94.175	Heterocephalus_glaber_male
ENSLBEG00000005203	lsm7	98	99.010	ENSHCOG00000020252	lsm7	100	99.010	Hippocampus_comes
ENSLBEG00000005203	lsm7	100	95.146	ENSIPUG00000024724	lsm7	100	95.146	Ictalurus_punctatus
ENSLBEG00000005203	lsm7	98	95.050	ENSSTOG00000028372	LSM7	99	95.050	Ictidomys_tridecemlineatus
ENSLBEG00000005203	lsm7	97	95.000	ENSJJAG00000001936	Lsm7	97	95.000	Jaculus_jaculus
ENSLBEG00000005203	lsm7	100	98.058	ENSKMAG00000022151	lsm7	100	98.058	Kryptolebias_marmoratus
ENSLBEG00000005203	lsm7	90	95.699	ENSLACG00000015700	LSM7	100	94.175	Latimeria_chalumnae
ENSLBEG00000005203	lsm7	98	97.030	ENSLOCG00000004356	lsm7	98	97.030	Lepisosteus_oculatus
ENSLBEG00000005203	lsm7	98	95.050	ENSLAFG00000029302	LSM7	98	95.050	Loxodonta_africana
ENSLBEG00000005203	lsm7	100	94.175	ENSMFAG00000044572	LSM7	100	94.175	Macaca_fascicularis
ENSLBEG00000005203	lsm7	100	94.175	ENSMMUG00000000452	LSM7	100	94.175	Macaca_mulatta
ENSLBEG00000005203	lsm7	100	94.175	ENSMNEG00000004393	LSM7	100	94.175	Macaca_nemestrina
ENSLBEG00000005203	lsm7	100	94.175	ENSMLEG00000030852	LSM7	100	95.050	Mandrillus_leucophaeus
ENSLBEG00000005203	lsm7	100	98.058	ENSMAMG00000005410	lsm7	100	98.058	Mastacembelus_armatus
ENSLBEG00000005203	lsm7	100	98.058	ENSMZEG00005028055	lsm7	100	98.058	Maylandia_zebra
ENSLBEG00000005203	lsm7	100	96.117	ENSMGAG00000000750	LSM7	89	96.117	Meleagris_gallopavo
ENSLBEG00000005203	lsm7	100	93.204	ENSMAUG00000009276	Lsm7	100	93.204	Mesocricetus_auratus
ENSLBEG00000005203	lsm7	100	94.175	ENSMICG00000028619	-	100	94.175	Microcebus_murinus
ENSLBEG00000005203	lsm7	100	93.204	ENSMICG00000009988	-	100	93.204	Microcebus_murinus
ENSLBEG00000005203	lsm7	100	93.204	ENSMOCG00000016925	Lsm7	100	93.204	Microtus_ochrogaster
ENSLBEG00000005203	lsm7	100	99.029	ENSMMOG00000019645	lsm7	98	99.029	Mola_mola
ENSLBEG00000005203	lsm7	100	95.146	ENSMODG00000004722	LSM7	100	95.146	Monodelphis_domestica
ENSLBEG00000005203	lsm7	100	98.058	ENSMALG00000014511	lsm7	79	98.058	Monopterus_albus
ENSLBEG00000005203	lsm7	99	93.137	MGP_CAROLIEiJ_G0015607	Lsm7	99	93.137	Mus_caroli
ENSLBEG00000005203	lsm7	99	93.137	ENSMUSG00000035215	Lsm7	99	93.137	Mus_musculus
ENSLBEG00000005203	lsm7	99	93.137	MGP_PahariEiJ_G0031020	Lsm7	99	93.137	Mus_pahari
ENSLBEG00000005203	lsm7	99	93.137	MGP_SPRETEiJ_G0016425	Lsm7	99	93.137	Mus_spretus
ENSLBEG00000005203	lsm7	100	92.233	ENSMLUG00000013097	-	100	92.233	Myotis_lucifugus
ENSLBEG00000005203	lsm7	99	88.235	ENSMLUG00000024002	-	94	88.235	Myotis_lucifugus
ENSLBEG00000005203	lsm7	100	92.233	ENSNGAG00000021637	Lsm7	100	92.233	Nannospalax_galili
ENSLBEG00000005203	lsm7	100	97.087	ENSNBRG00000001237	-	82	97.087	Neolamprologus_brichardi
ENSLBEG00000005203	lsm7	98	99.010	ENSNBRG00000015770	lsm7	87	99.010	Neolamprologus_brichardi
ENSLBEG00000005203	lsm7	100	94.175	ENSNLEG00000002265	LSM7	100	94.175	Nomascus_leucogenys
ENSLBEG00000005203	lsm7	100	87.379	ENSODEG00000018769	-	100	87.379	Octodon_degus
ENSLBEG00000005203	lsm7	100	74.757	ENSODEG00000008190	-	100	74.757	Octodon_degus
ENSLBEG00000005203	lsm7	100	94.175	ENSODEG00000013590	-	100	94.175	Octodon_degus
ENSLBEG00000005203	lsm7	100	98.058	ENSONIG00000001801	lsm7	89	98.058	Oreochromis_niloticus
ENSLBEG00000005203	lsm7	100	99.029	ENSORLG00000023951	lsm7	100	99.029	Oryzias_latipes
ENSLBEG00000005203	lsm7	100	99.029	ENSORLG00020022226	lsm7	100	99.029	Oryzias_latipes_hni
ENSLBEG00000005203	lsm7	100	98.058	ENSORLG00015020044	lsm7	94	100.000	Oryzias_latipes_hsok
ENSLBEG00000005203	lsm7	100	99.029	ENSOMEG00000012806	lsm7	100	99.029	Oryzias_melastigma
ENSLBEG00000005203	lsm7	98	93.069	ENSOGAG00000000144	-	99	93.069	Otolemur_garnettii
ENSLBEG00000005203	lsm7	100	82.524	ENSOGAG00000024373	-	100	82.524	Otolemur_garnettii
ENSLBEG00000005203	lsm7	100	93.204	ENSOARG00000014013	LSM7	100	93.204	Ovis_aries
ENSLBEG00000005203	lsm7	100	94.175	ENSPPAG00000026500	LSM7	100	94.175	Pan_paniscus
ENSLBEG00000005203	lsm7	100	93.204	ENSPPRG00000008624	LSM7	100	93.204	Panthera_pardus
ENSLBEG00000005203	lsm7	98	94.059	ENSPTIG00000016252	LSM7	98	94.059	Panthera_tigris_altaica
ENSLBEG00000005203	lsm7	100	94.175	ENSPTRG00000010233	LSM7	100	94.175	Pan_troglodytes
ENSLBEG00000005203	lsm7	100	94.175	ENSPANG00000020668	LSM7	100	94.175	Papio_anubis
ENSLBEG00000005203	lsm7	100	97.087	ENSPKIG00000011325	lsm7	100	97.087	Paramormyrops_kingsleyae
ENSLBEG00000005203	lsm7	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSLBEG00000005203	lsm7	100	99.029	ENSPMGG00000006498	lsm7	100	99.029	Periophthalmus_magnuspinnatus
ENSLBEG00000005203	lsm7	100	95.146	ENSPCIG00000030454	LSM7	100	95.146	Phascolarctos_cinereus
ENSLBEG00000005203	lsm7	100	96.117	ENSPFOG00000012467	lsm7	91	96.117	Poecilia_formosa
ENSLBEG00000005203	lsm7	100	96.117	ENSPLAG00000000252	lsm7	94	97.059	Poecilia_latipinna
ENSLBEG00000005203	lsm7	100	96.117	ENSPMEG00000000587	lsm7	94	97.059	Poecilia_mexicana
ENSLBEG00000005203	lsm7	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSLBEG00000005203	lsm7	71	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSLBEG00000005203	lsm7	100	94.175	ENSPCOG00000017177	LSM7	100	94.175	Propithecus_coquereli
ENSLBEG00000005203	lsm7	100	98.058	ENSPNYG00000006938	lsm7	100	98.058	Pundamilia_nyererei
ENSLBEG00000005203	lsm7	100	97.087	ENSPNAG00000010141	lsm7	100	97.087	Pygocentrus_nattereri
ENSLBEG00000005203	lsm7	99	94.118	ENSRNOG00000019552	Lsm7	99	94.118	Rattus_norvegicus
ENSLBEG00000005203	lsm7	100	94.175	ENSRBIG00000035978	LSM7	100	94.175	Rhinopithecus_bieti
ENSLBEG00000005203	lsm7	100	94.175	ENSRROG00000034044	LSM7	100	94.175	Rhinopithecus_roxellana
ENSLBEG00000005203	lsm7	83	48.315	YNL147W	-	77	48.315	Saccharomyces_cerevisiae
ENSLBEG00000005203	lsm7	100	94.175	ENSSBOG00000034899	LSM7	100	94.175	Saimiri_boliviensis_boliviensis
ENSLBEG00000005203	lsm7	100	95.146	ENSSFOG00015006728	lsm7	100	95.146	Scleropages_formosus
ENSLBEG00000005203	lsm7	98	100.000	ENSSMAG00000004195	lsm7	93	100.000	Scophthalmus_maximus
ENSLBEG00000005203	lsm7	100	99.029	ENSSDUG00000001863	lsm7	100	99.029	Seriola_dumerili
ENSLBEG00000005203	lsm7	100	99.029	ENSSLDG00000016339	lsm7	100	99.029	Seriola_lalandi_dorsalis
ENSLBEG00000005203	lsm7	100	99.029	ENSSPAG00000015221	lsm7	100	99.029	Stegastes_partitus
ENSLBEG00000005203	lsm7	98	95.050	ENSSSCG00000013463	LSM7	99	95.050	Sus_scrofa
ENSLBEG00000005203	lsm7	98	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSLBEG00000005203	lsm7	100	97.087	ENSTRUG00000022913	lsm7	100	97.087	Takifugu_rubripes
ENSLBEG00000005203	lsm7	100	97.087	ENSTNIG00000015525	lsm7	100	97.087	Tetraodon_nigroviridis
ENSLBEG00000005203	lsm7	68	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSLBEG00000005203	lsm7	100	92.233	ENSUAMG00000000912	LSM7	86	92.233	Ursus_americanus
ENSLBEG00000005203	lsm7	98	94.059	ENSUMAG00000006556	LSM7	78	95.000	Ursus_maritimus
ENSLBEG00000005203	lsm7	69	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSLBEG00000005203	lsm7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSLBEG00000005203	lsm7	99	98.039	ENSXCOG00000002572	lsm7	100	98.039	Xiphophorus_couchianus
ENSLBEG00000005203	lsm7	100	98.058	ENSXMAG00000018630	lsm7	100	98.058	Xiphophorus_maculatus