EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000005387 (Gene tree)
Gene ID: 110005683
Gene Symbol: -
Alias: -
Full Name: THO complex subunit 4-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 4476 bases
Position: chrFKLU01002326.1:6105-10580
Accession: 110005683
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000006957	RRM_1	PF00076.22	4.1e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000007310	-	1972	XM_020660964	ENSLBEP00000006957	268 (aa)	XP_020516620	UPI0009B4822E

Gene Model

Click here to download ENSLBEG00000005387's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000005387's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000005387	-	100	51.673	ENSLBEG00000023118	alyref	90	50.186
ENSLBEG00000005387	-	99	89.434	ENSLBEG00000012930	-	99	88.302

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000005387	-	100	72.222	ENSAPOG00000000183	-	100	71.852	Acanthochromis_polyacanthus
ENSLBEG00000005387	-	100	61.071	ENSACIG00000020351	-	100	60.142	Amphilophus_citrinellus
ENSLBEG00000005387	-	99	47.387	ENSACIG00000006351	alyref	98	47.603	Amphilophus_citrinellus
ENSLBEG00000005387	-	100	69.004	ENSAOCG00000019305	-	100	69.485	Amphiprion_ocellaris
ENSLBEG00000005387	-	100	49.653	ENSAOCG00000014012	alyref	100	49.485	Amphiprion_ocellaris
ENSLBEG00000005387	-	100	68.635	ENSAPEG00000013527	-	100	69.118	Amphiprion_percula
ENSLBEG00000005387	-	100	49.653	ENSAPEG00000014603	alyref	100	49.485	Amphiprion_percula
ENSLBEG00000005387	-	100	67.391	ENSATEG00000000382	-	100	69.928	Anabas_testudineus
ENSLBEG00000005387	-	66	55.000	ENSATEG00000004307	alyref	100	49.653	Anabas_testudineus
ENSLBEG00000005387	-	57	53.896	ENSAPLG00000014745	-	100	50.633	Anas_platyrhynchos
ENSLBEG00000005387	-	100	64.413	ENSACLG00000010184	-	100	64.769	Astatotilapia_calliptera
ENSLBEG00000005387	-	66	54.040	ENSACLG00000008432	alyref	100	49.829	Astatotilapia_calliptera
ENSLBEG00000005387	-	66	53.922	ENSAMXG00000007359	alyref	100	49.169	Astyanax_mexicanus
ENSLBEG00000005387	-	68	46.632	ENSCING00000013568	-	99	41.176	Ciona_intestinalis
ENSLBEG00000005387	-	65	49.189	ENSCSAVG00000003324	-	99	43.165	Ciona_savignyi
ENSLBEG00000005387	-	100	49.825	ENSCSEG00000017800	alyref	100	51.903	Cynoglossus_semilaevis
ENSLBEG00000005387	-	100	59.854	ENSCVAG00000007789	-	100	62.409	Cyprinodon_variegatus
ENSLBEG00000005387	-	100	50.871	ENSCVAG00000014869	alyref	100	50.347	Cyprinodon_variegatus
ENSLBEG00000005387	-	100	46.006	ENSDARG00000077732	alyref	100	47.492	Danio_rerio
ENSLBEG00000005387	-	99	38.567	FBgn0010774	Ref1	70	41.414	Drosophila_melanogaster
ENSLBEG00000005387	-	62	47.568	ENSEBUG00000008253	alyref	95	42.014	Eptatretus_burgeri
ENSLBEG00000005387	-	100	39.273	ENSEBUG00000006305	alyref	100	40.146	Eptatretus_burgeri
ENSLBEG00000005387	-	100	55.036	ENSELUG00000008849	-	100	57.401	Esox_lucius
ENSLBEG00000005387	-	100	51.724	ENSELUG00000017178	alyref	100	50.000	Esox_lucius
ENSLBEG00000005387	-	64	59.302	ENSFALG00000011923	-	99	55.000	Ficedula_albicollis
ENSLBEG00000005387	-	66	54.271	ENSFHEG00000019426	alyref	100	45.270	Fundulus_heteroclitus
ENSLBEG00000005387	-	100	62.409	ENSFHEG00000004698	-	100	64.599	Fundulus_heteroclitus
ENSLBEG00000005387	-	70	53.431	ENSGMOG00000009882	alyref	75	55.122	Gadus_morhua
ENSLBEG00000005387	-	75	63.725	ENSGMOG00000013122	-	100	62.981	Gadus_morhua
ENSLBEG00000005387	-	100	57.455	ENSGAFG00000007573	-	100	59.643	Gambusia_affinis
ENSLBEG00000005387	-	100	48.299	ENSGAFG00000006014	alyref	100	47.603	Gambusia_affinis
ENSLBEG00000005387	-	66	54.040	ENSHBUG00000020196	alyref	100	49.829	Haplochromis_burtoni
ENSLBEG00000005387	-	100	64.664	ENSHBUG00000001454	-	100	65.018	Haplochromis_burtoni
ENSLBEG00000005387	-	99	65.038	ENSHCOG00000012825	-	95	65.918	Hippocampus_comes
ENSLBEG00000005387	-	100	49.492	ENSIPUG00000009469	alyref	100	48.505	Ictalurus_punctatus
ENSLBEG00000005387	-	66	51.256	ENSKMAG00000008912	alyref	100	46.711	Kryptolebias_marmoratus
ENSLBEG00000005387	-	100	62.409	ENSKMAG00000006462	-	100	60.870	Kryptolebias_marmoratus
ENSLBEG00000005387	-	85	53.913	ENSLOCG00000013879	alyref	83	48.430	Lepisosteus_oculatus
ENSLBEG00000005387	-	100	66.790	ENSMAMG00000005464	-	100	69.004	Mastacembelus_armatus
ENSLBEG00000005387	-	66	56.345	ENSMAMG00000003034	alyref	100	50.173	Mastacembelus_armatus
ENSLBEG00000005387	-	66	54.040	ENSMZEG00005008639	alyref	100	49.829	Maylandia_zebra
ENSLBEG00000005387	-	100	64.057	ENSMZEG00005012096	-	100	64.769	Maylandia_zebra
ENSLBEG00000005387	-	99	53.333	ENSMMOG00000007032	-	98	54.815	Mola_mola
ENSLBEG00000005387	-	100	49.653	ENSMMOG00000012458	alyref	97	47.241	Mola_mola
ENSLBEG00000005387	-	100	71.014	ENSMALG00000006054	-	100	70.330	Monopterus_albus
ENSLBEG00000005387	-	78	47.867	ENSMLUG00000028605	-	98	38.832	Myotis_lucifugus
ENSLBEG00000005387	-	98	37.748	ENSMLUG00000022178	-	98	38.596	Myotis_lucifugus
ENSLBEG00000005387	-	98	41.176	ENSMLUG00000022467	-	98	40.625	Myotis_lucifugus
ENSLBEG00000005387	-	98	40.339	ENSMLUG00000009247	-	98	41.877	Myotis_lucifugus
ENSLBEG00000005387	-	66	48.020	ENSMLUG00000014372	-	100	43.003	Myotis_lucifugus
ENSLBEG00000005387	-	100	46.154	ENSMLUG00000004098	-	100	44.755	Myotis_lucifugus
ENSLBEG00000005387	-	66	48.000	ENSMLUG00000006521	-	100	44.330	Myotis_lucifugus
ENSLBEG00000005387	-	98	36.156	ENSMLUG00000030671	-	99	38.908	Myotis_lucifugus
ENSLBEG00000005387	-	100	48.754	ENSNGAG00000022014	-	100	50.916	Nannospalax_galili
ENSLBEG00000005387	-	100	65.233	ENSNBRG00000017460	-	100	65.714	Neolamprologus_brichardi
ENSLBEG00000005387	-	66	53.500	ENSNBRG00000001747	alyref	100	49.831	Neolamprologus_brichardi
ENSLBEG00000005387	-	100	48.966	ENSONIG00000019434	alyref	100	49.329	Oreochromis_niloticus
ENSLBEG00000005387	-	100	65.591	ENSONIG00000003296	-	100	65.950	Oreochromis_niloticus
ENSLBEG00000005387	-	99	54.487	ENSORLG00000001620	-	88	54.808	Oryzias_latipes
ENSLBEG00000005387	-	100	47.241	ENSORLG00020011942	alyref	100	46.284	Oryzias_latipes_hni
ENSLBEG00000005387	-	100	65.074	ENSORLG00020015673	-	100	65.074	Oryzias_latipes_hni
ENSLBEG00000005387	-	100	64.706	ENSORLG00015015143	-	100	65.074	Oryzias_latipes_hsok
ENSLBEG00000005387	-	100	47.569	ENSORLG00015022664	alyref	100	46.599	Oryzias_latipes_hsok
ENSLBEG00000005387	-	100	47.492	ENSOMEG00000019176	alyref	100	46.897	Oryzias_melastigma
ENSLBEG00000005387	-	99	60.674	ENSOMEG00000007158	-	97	60.440	Oryzias_melastigma
ENSLBEG00000005387	-	75	54.902	ENSPPAG00000036403	-	68	54.902	Pan_paniscus
ENSLBEG00000005387	-	100	51.903	ENSPKIG00000007070	alyref	100	49.329	Paramormyrops_kingsleyae
ENSLBEG00000005387	-	99	51.799	ENSPKIG00000006233	-	81	50.896	Paramormyrops_kingsleyae
ENSLBEG00000005387	-	62	61.765	ENSPMGG00000012994	-	93	57.831	Periophthalmus_magnuspinnatus
ENSLBEG00000005387	-	99	51.228	ENSPMGG00000016600	alyref	91	47.586	Periophthalmus_magnuspinnatus
ENSLBEG00000005387	-	100	51.119	ENSPEMG00000016628	-	100	50.554	Peromyscus_maniculatus_bairdii
ENSLBEG00000005387	-	100	47.797	ENSPFOG00000022825	alyref	99	48.123	Poecilia_formosa
ENSLBEG00000005387	-	100	60.000	ENSPFOG00000017094	-	100	62.182	Poecilia_formosa
ENSLBEG00000005387	-	100	47.959	ENSPLAG00000006948	alyref	100	48.288	Poecilia_latipinna
ENSLBEG00000005387	-	100	60.000	ENSPLAG00000014380	-	100	62.182	Poecilia_latipinna
ENSLBEG00000005387	-	100	47.797	ENSPMEG00000003547	alyref	100	48.123	Poecilia_mexicana
ENSLBEG00000005387	-	100	60.000	ENSPMEG00000023039	-	100	62.182	Poecilia_mexicana
ENSLBEG00000005387	-	100	47.959	ENSPREG00000015795	alyref	100	48.814	Poecilia_reticulata
ENSLBEG00000005387	-	100	59.854	ENSPREG00000003649	-	100	60.949	Poecilia_reticulata
ENSLBEG00000005387	-	99	61.594	ENSPNYG00000002879	-	98	62.590	Pundamilia_nyererei
ENSLBEG00000005387	-	66	54.040	ENSPNYG00000017498	alyref	100	49.829	Pundamilia_nyererei
ENSLBEG00000005387	-	100	49.655	ENSPNAG00000002531	alyref	100	48.464	Pygocentrus_nattereri
ENSLBEG00000005387	-	76	56.522	ENSSBOG00000030924	-	84	55.556	Saimiri_boliviensis_boliviensis
ENSLBEG00000005387	-	99	42.910	ENSSHAG00000000609	-	99	40.942	Sarcophilus_harrisii
ENSLBEG00000005387	-	99	41.489	ENSSHAG00000012866	-	99	39.175	Sarcophilus_harrisii
ENSLBEG00000005387	-	85	54.978	ENSSFOG00015003923	alyref	71	53.333	Scleropages_formosus
ENSLBEG00000005387	-	76	50.935	ENSSFOG00015003678	alyref	83	52.174	Scleropages_formosus
ENSLBEG00000005387	-	100	73.260	ENSSMAG00000011169	-	92	82.738	Scophthalmus_maximus
ENSLBEG00000005387	-	66	54.500	ENSSMAG00000009283	alyref	100	49.831	Scophthalmus_maximus
ENSLBEG00000005387	-	100	50.000	ENSSDUG00000016158	alyref	100	50.853	Seriola_dumerili
ENSLBEG00000005387	-	66	55.051	ENSSLDG00000017803	alyref	100	49.488	Seriola_lalandi_dorsalis
ENSLBEG00000005387	-	99	74.349	ENSSPAG00000017028	-	96	73.978	Stegastes_partitus
ENSLBEG00000005387	-	100	64.945	ENSTRUG00000003051	-	100	58.824	Takifugu_rubripes
ENSLBEG00000005387	-	100	59.559	ENSTNIG00000014136	-	100	56.827	Tetraodon_nigroviridis
ENSLBEG00000005387	-	100	49.822	ENSTNIG00000011595	alyref	100	49.281	Tetraodon_nigroviridis
ENSLBEG00000005387	-	77	56.731	ENSVVUG00000000272	-	82	55.769	Vulpes_vulpes
ENSLBEG00000005387	-	99	47.423	ENSXCOG00000018047	alyref	99	46.233	Xiphophorus_couchianus
ENSLBEG00000005387	-	99	47.423	ENSXMAG00000012218	alyref	99	46.233	Xiphophorus_maculatus
ENSLBEG00000005387	-	100	60.584	ENSXMAG00000018086	-	100	62.774	Xiphophorus_maculatus