EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000005480 (Gene tree)
Gene ID: 109980130
Gene Symbol: -
Alias: -
Full Name: valine--tRNA ligase%2C mitochondrial-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 7833 bases
Position: chrFKLU01010801.1:191-8023
Accession: 109980130
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000007292	tRNA-synt_1g	PF09334.11	7.8e-16	1	2
ENSLBEP00000007292	tRNA-synt_1g	PF09334.11	7.8e-16	2	2
ENSLBEP00000007280	tRNA-synt_1g	PF09334.11	1.5e-15	1	1
ENSLBEP00000007280	tRNA-synt_1	PF00133.22	8.8e-187	1	1
ENSLBEP00000007292	tRNA-synt_1	PF00133.22	3.3e-186	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000007670	-	2040	XM_020628694	ENSLBEP00000007292	680 (aa)	XP_020484350	-
ENSLBET00000007655	-	2400	-	ENSLBEP00000007280	799 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000005480's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000005480's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000005480	-	81	96.552	ENSLBEG00000011949	vars2	51	96.552

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000005480	-	81	83.152	ENSAPOG00000007396	vars2	51	83.514	Acanthochromis_polyacanthus
ENSLBEG00000005480	-	81	64.130	ENSAMEG00000012997	VARS2	51	64.144	Ailuropoda_melanoleuca
ENSLBEG00000005480	-	81	82.790	ENSACIG00000004344	vars2	53	82.826	Amphilophus_citrinellus
ENSLBEG00000005480	-	81	84.058	ENSAOCG00000000476	vars2	51	84.420	Amphiprion_ocellaris
ENSLBEG00000005480	-	81	83.877	ENSAPEG00000008646	vars2	50	84.239	Amphiprion_percula
ENSLBEG00000005480	-	81	84.783	ENSATEG00000012291	vars2	51	85.145	Anabas_testudineus
ENSLBEG00000005480	-	80	66.849	ENSACAG00000022093	VARS2	52	66.487	Anolis_carolinensis
ENSLBEG00000005480	-	82	61.871	ENSANAG00000038018	VARS2	52	62.342	Aotus_nancymaae
ENSLBEG00000005480	-	81	81.522	ENSACLG00000018673	vars2	51	81.736	Astatotilapia_calliptera
ENSLBEG00000005480	-	81	80.909	ENSAMXG00000017773	vars2	54	81.273	Astyanax_mexicanus
ENSLBEG00000005480	-	81	63.587	ENSBTAG00000010698	VARS2	52	63.604	Bos_taurus
ENSLBEG00000005480	-	82	61.691	ENSCJAG00000019826	VARS2	52	62.162	Callithrix_jacchus
ENSLBEG00000005480	-	81	64.312	ENSCAFG00000000454	VARS2	52	64.324	Canis_familiaris
ENSLBEG00000005480	-	82	63.784	ENSCAFG00020019387	VARS2	56	64.324	Canis_lupus_dingo
ENSLBEG00000005480	-	81	63.043	ENSCHIG00000007847	VARS2	52	63.063	Capra_hircus
ENSLBEG00000005480	-	82	62.950	ENSTSYG00000009904	VARS2	52	63.423	Carlito_syrichta
ENSLBEG00000005480	-	81	63.702	ENSCAPG00000017770	VARS2	59	64.065	Cavia_aperea
ENSLBEG00000005480	-	81	62.883	ENSCPOG00000021834	VARS2	52	63.423	Cavia_porcellus
ENSLBEG00000005480	-	82	62.050	ENSCCAG00000037907	VARS2	57	62.523	Cebus_capucinus
ENSLBEG00000005480	-	82	62.410	ENSCATG00000032554	VARS2	52	62.883	Cercocebus_atys
ENSLBEG00000005480	-	81	62.795	ENSCLAG00000002889	VARS2	52	62.795	Chinchilla_lanigera
ENSLBEG00000005480	-	82	63.129	ENSCSAG00000008327	VARS2	52	63.604	Chlorocebus_sabaeus
ENSLBEG00000005480	-	81	65.636	ENSCPBG00000021502	VARS2	55	67.742	Chrysemys_picta_bellii
ENSLBEG00000005480	-	81	62.681	ENSCANG00000014991	VARS2	52	62.703	Colobus_angolensis_palliatus
ENSLBEG00000005480	-	81	63.406	ENSCGRG00001021535	Vars2	52	63.423	Cricetulus_griseus_chok1gshd
ENSLBEG00000005480	-	81	63.406	ENSCGRG00000014112	Vars2	52	63.423	Cricetulus_griseus_crigri
ENSLBEG00000005480	-	63	89.000	ENSCSEG00000015432	vars2	54	69.565	Cynoglossus_semilaevis
ENSLBEG00000005480	-	56	79.894	ENSCVAG00000017765	vars2	52	80.423	Cyprinodon_variegatus
ENSLBEG00000005480	-	81	80.692	ENSDARG00000056717	vars2	53	80.322	Danio_rerio
ENSLBEG00000005480	-	67	62.227	ENSDORG00000008516	Vars2	52	60.981	Dipodomys_ordii
ENSLBEG00000005480	-	81	55.717	ENSETEG00000014844	VARS2	52	55.856	Echinops_telfairi
ENSLBEG00000005480	-	81	63.587	ENSEASG00005019997	VARS2	61	63.357	Equus_asinus_asinus
ENSLBEG00000005480	-	81	63.587	ENSECAG00000018202	VARS2	52	63.604	Equus_caballus
ENSLBEG00000005480	-	81	80.072	ENSELUG00000017824	vars2	50	80.435	Esox_lucius
ENSLBEG00000005480	-	81	63.949	ENSFCAG00000010531	VARS2	52	63.964	Felis_catus
ENSLBEG00000005480	-	81	62.613	ENSFDAG00000017216	VARS2	52	62.703	Fukomys_damarensis
ENSLBEG00000005480	-	81	79.891	ENSFHEG00000013932	vars2	57	79.891	Fundulus_heteroclitus
ENSLBEG00000005480	-	81	77.437	ENSGMOG00000018960	vars2	58	77.798	Gadus_morhua
ENSLBEG00000005480	-	81	82.790	ENSGACG00000001464	vars2	57	82.648	Gasterosteus_aculeatus
ENSLBEG00000005480	-	81	66.546	ENSGAGG00000011652	VARS2	56	66.546	Gopherus_agassizii
ENSLBEG00000005480	-	81	62.319	ENSGGOG00000014587	VARS2	52	62.342	Gorilla_gorilla
ENSLBEG00000005480	-	81	80.616	ENSHBUG00000002448	vars2	53	80.832	Haplochromis_burtoni
ENSLBEG00000005480	-	81	63.243	ENSHGLG00000012886	VARS2	50	63.784	Heterocephalus_glaber_female
ENSLBEG00000005480	-	81	63.063	ENSHGLG00100016535	VARS2	52	63.604	Heterocephalus_glaber_male
ENSLBEG00000005480	-	81	80.727	ENSIPUG00000015573	Vars2	51	80.727	Ictalurus_punctatus
ENSLBEG00000005480	-	82	62.410	ENSSTOG00000009924	VARS2	52	62.883	Ictidomys_tridecemlineatus
ENSLBEG00000005480	-	81	61.622	ENSJJAG00000011144	Vars2	52	62.162	Jaculus_jaculus
ENSLBEG00000005480	-	81	80.797	ENSKMAG00000001393	vars2	51	81.159	Kryptolebias_marmoratus
ENSLBEG00000005480	-	76	62.049	ENSLACG00000001576	-	51	62.429	Latimeria_chalumnae
ENSLBEG00000005480	-	82	63.129	ENSLAFG00000015183	VARS2	52	63.423	Loxodonta_africana
ENSLBEG00000005480	-	81	62.681	ENSMFAG00000042367	VARS2	52	62.703	Macaca_fascicularis
ENSLBEG00000005480	-	81	62.681	ENSMMUG00000018609	VARS2	52	62.703	Macaca_mulatta
ENSLBEG00000005480	-	81	62.319	ENSMNEG00000043163	VARS2	52	62.342	Macaca_nemestrina
ENSLBEG00000005480	-	82	62.590	ENSMLEG00000041728	VARS2	51	63.063	Mandrillus_leucophaeus
ENSLBEG00000005480	-	81	81.884	ENSMAMG00000020339	vars2	51	82.098	Mastacembelus_armatus
ENSLBEG00000005480	-	81	81.522	ENSMZEG00005017669	vars2	51	81.736	Maylandia_zebra
ENSLBEG00000005480	-	81	62.862	ENSMAUG00000018946	Vars2	52	62.996	Mesocricetus_auratus
ENSLBEG00000005480	-	82	62.590	ENSMICG00000005365	VARS2	62	63.063	Microcebus_murinus
ENSLBEG00000005480	-	81	63.043	ENSMOCG00000014607	Vars2	56	63.063	Microtus_ochrogaster
ENSLBEG00000005480	-	81	81.159	ENSMMOG00000012122	vars2	52	81.159	Mola_mola
ENSLBEG00000005480	-	82	60.971	ENSMODG00000015848	VARS2	51	61.664	Monodelphis_domestica
ENSLBEG00000005480	-	81	82.640	ENSMALG00000009217	vars2	55	82.821	Monopterus_albus
ENSLBEG00000005480	-	81	62.681	MGP_CAROLIEiJ_G0021529	Vars2	83	65.591	Mus_caroli
ENSLBEG00000005480	-	81	62.319	ENSMUSG00000038838	Vars2	83	64.516	Mus_musculus
ENSLBEG00000005480	-	81	62.681	MGP_PahariEiJ_G0020523	Vars2	83	64.516	Mus_pahari
ENSLBEG00000005480	-	81	62.681	MGP_SPRETEiJ_G0022436	Vars2	83	65.591	Mus_spretus
ENSLBEG00000005480	-	82	64.209	ENSMPUG00000011643	VARS2	52	64.685	Mustela_putorius_furo
ENSLBEG00000005480	-	81	63.043	ENSMLUG00000002356	VARS2	51	62.791	Myotis_lucifugus
ENSLBEG00000005480	-	82	56.115	ENSNGAG00000020607	Vars2	51	56.577	Nannospalax_galili
ENSLBEG00000005480	-	81	60.507	ENSNLEG00000005625	VARS2	51	60.541	Nomascus_leucogenys
ENSLBEG00000005480	-	81	56.884	ENSMEUG00000014475	VARS2	59	56.884	Notamacropus_eugenii
ENSLBEG00000005480	-	81	62.613	ENSODEG00000017965	VARS2	52	62.703	Octodon_degus
ENSLBEG00000005480	-	81	78.261	ENSORLG00000010632	vars2	51	78.261	Oryzias_latipes
ENSLBEG00000005480	-	81	78.261	ENSORLG00020018584	vars2	51	78.261	Oryzias_latipes_hni
ENSLBEG00000005480	-	81	78.442	ENSORLG00015010408	vars2	51	78.442	Oryzias_latipes_hsok
ENSLBEG00000005480	-	81	79.891	ENSOMEG00000008360	vars2	51	79.891	Oryzias_melastigma
ENSLBEG00000005480	-	82	62.366	ENSOGAG00000006087	VARS2	51	62.837	Otolemur_garnettii
ENSLBEG00000005480	-	81	62.206	ENSOARG00000010844	VARS2	51	62.230	Ovis_aries
ENSLBEG00000005480	-	81	62.319	ENSPPAG00000041141	VARS2	52	62.342	Pan_paniscus
ENSLBEG00000005480	-	81	63.587	ENSPPRG00000006751	VARS2	51	63.604	Panthera_pardus
ENSLBEG00000005480	-	81	63.768	ENSPTIG00000017799	VARS2	55	63.784	Panthera_tigris_altaica
ENSLBEG00000005480	-	81	62.319	ENSPTRG00000034497	VARS2	52	62.342	Pan_troglodytes
ENSLBEG00000005480	-	82	62.590	ENSPANG00000018481	VARS2	54	63.063	Papio_anubis
ENSLBEG00000005480	-	81	78.545	ENSPKIG00000011372	vars2	51	78.909	Paramormyrops_kingsleyae
ENSLBEG00000005480	-	75	65.692	ENSPSIG00000006206	VARS2	73	66.082	Pelodiscus_sinensis
ENSLBEG00000005480	-	81	83.333	ENSPMGG00000000465	vars2	53	83.152	Periophthalmus_magnuspinnatus
ENSLBEG00000005480	-	81	63.043	ENSPEMG00000014691	Vars2	52	63.063	Peromyscus_maniculatus_bairdii
ENSLBEG00000005480	-	82	62.770	ENSPCIG00000015040	VARS2	55	63.243	Phascolarctos_cinereus
ENSLBEG00000005480	-	81	79.603	ENSPFOG00000017616	vars2	52	79.501	Poecilia_formosa
ENSLBEG00000005480	-	81	79.891	ENSPLAG00000019778	vars2	52	79.785	Poecilia_latipinna
ENSLBEG00000005480	-	81	79.891	ENSPMEG00000011123	vars2	52	79.785	Poecilia_mexicana
ENSLBEG00000005480	-	81	67.210	ENSPREG00000014998	vars2	51	67.263	Poecilia_reticulata
ENSLBEG00000005480	-	81	62.319	ENSPPYG00000016424	VARS2	52	62.342	Pongo_abelii
ENSLBEG00000005480	-	81	62.862	ENSPCOG00000014839	VARS2	51	62.883	Propithecus_coquereli
ENSLBEG00000005480	-	81	63.225	ENSPVAG00000004197	VARS2	52	63.243	Pteropus_vampyrus
ENSLBEG00000005480	-	74	79.882	ENSPNYG00000010314	vars2	53	79.532	Pundamilia_nyererei
ENSLBEG00000005480	-	81	81.273	ENSPNAG00000026793	vars2	51	81.636	Pygocentrus_nattereri
ENSLBEG00000005480	-	81	63.225	ENSRNOG00000000833	Vars2	52	63.243	Rattus_norvegicus
ENSLBEG00000005480	-	81	62.319	ENSRBIG00000032725	VARS2	52	62.342	Rhinopithecus_bieti
ENSLBEG00000005480	-	81	62.500	ENSRROG00000043847	VARS2	52	62.523	Rhinopithecus_roxellana
ENSLBEG00000005480	-	82	61.871	ENSSBOG00000033240	VARS2	50	62.342	Saimiri_boliviensis_boliviensis
ENSLBEG00000005480	-	82	63.129	ENSSHAG00000009307	VARS2	52	63.604	Sarcophilus_harrisii
ENSLBEG00000005480	-	81	77.495	ENSSFOG00015016187	vars2	51	77.495	Scleropages_formosus
ENSLBEG00000005480	-	81	84.058	ENSSMAG00000020842	vars2	52	84.058	Scophthalmus_maximus
ENSLBEG00000005480	-	81	84.964	ENSSDUG00000011598	vars2	51	85.326	Seriola_dumerili
ENSLBEG00000005480	-	81	85.401	ENSSLDG00000015492	vars2	53	84.767	Seriola_lalandi_dorsalis
ENSLBEG00000005480	-	82	65.225	ENSSPUG00000014700	VARS2	57	65.884	Sphenodon_punctatus
ENSLBEG00000005480	-	81	80.254	ENSSPAG00000004654	vars2	51	80.616	Stegastes_partitus
ENSLBEG00000005480	-	81	64.493	ENSSSCG00000001384	VARS2	56	64.505	Sus_scrofa
ENSLBEG00000005480	-	81	81.736	ENSTRUG00000005264	vars2	53	81.753	Takifugu_rubripes
ENSLBEG00000005480	-	81	79.492	ENSTNIG00000005916	vars2	51	79.818	Tetraodon_nigroviridis
ENSLBEG00000005480	-	81	63.949	ENSUAMG00000026124	VARS2	59	64.140	Ursus_americanus
ENSLBEG00000005480	-	81	64.130	ENSUMAG00000019894	VARS2	52	64.144	Ursus_maritimus
ENSLBEG00000005480	-	82	63.489	ENSVVUG00000010754	VARS2	50	63.964	Vulpes_vulpes
ENSLBEG00000005480	-	81	61.041	ENSXETG00000003036	vars2	58	61.041	Xenopus_tropicalis
ENSLBEG00000005480	-	81	80.072	ENSXCOG00000003455	vars2	54	79.964	Xiphophorus_couchianus
ENSLBEG00000005480	-	81	80.435	ENSXMAG00000013523	vars2	52	80.322	Xiphophorus_maculatus