EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000005678 (Gene tree)
Gene ID: 110002383
Gene Symbol: snrpb
Alias: zgc:77315
Full Name: small nuclear ribonucleoprotein polypeptides B and B1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 4802 bases
Position: chrFKLU01000946.1:23686-28487
Accession: 110002383
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000007343	LSM	PF01423.22	7.6e-19	1	1
ENSLBEP00000007374	LSM	PF01423.22	9.7e-19	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000007757	-	828	-	ENSLBEP00000007374	275 (aa)	-	-
ENSLBET00000007722	-	1776	XM_020657983	ENSLBEP00000007343	238 (aa)	XP_020513639	UPI00054BCBA9

Gene Model

Click here to download ENSLBEG00000005678's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000005678's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000005678	snrpb	70	94.643	ENSG00000125835	SNRPB	74	98.077	Homo_sapiens
ENSLBEG00000005678	snrpb	100	99.167	ENSAPOG00000019606	snrpb	82	99.167	Acanthochromis_polyacanthus
ENSLBEG00000005678	snrpb	69	94.611	ENSAMEG00000011353	SNRPB	75	92.308	Ailuropoda_melanoleuca
ENSLBEG00000005678	snrpb	92	99.099	ENSACIG00000014480	snrpb	99	99.107	Amphilophus_citrinellus
ENSLBEG00000005678	snrpb	100	98.750	ENSAOCG00000006876	snrpb	100	98.750	Amphiprion_ocellaris
ENSLBEG00000005678	snrpb	100	98.750	ENSAPEG00000021585	snrpb	100	98.750	Amphiprion_percula
ENSLBEG00000005678	snrpb	100	98.333	ENSATEG00000009836	snrpb	100	98.333	Anabas_testudineus
ENSLBEG00000005678	snrpb	66	95.625	ENSACAG00000002053	SNRPB	75	93.103	Anolis_carolinensis
ENSLBEG00000005678	snrpb	96	86.147	ENSANAG00000036271	-	74	84.699	Aotus_nancymaae
ENSLBEG00000005678	snrpb	70	94.643	ENSANAG00000024443	-	79	92.350	Aotus_nancymaae
ENSLBEG00000005678	snrpb	100	99.167	ENSACLG00000014707	snrpb	100	99.167	Astatotilapia_calliptera
ENSLBEG00000005678	snrpb	99	98.729	ENSAMXG00000029434	snrpb	99	98.729	Astyanax_mexicanus
ENSLBEG00000005678	snrpb	91	81.900	ENSBTAG00000001038	SNRPB	79	92.896	Bos_taurus
ENSLBEG00000005678	snrpb	89	85.047	ENSCJAG00000023097	-	76	85.246	Callithrix_jacchus
ENSLBEG00000005678	snrpb	70	94.643	ENSCJAG00000020971	-	79	92.350	Callithrix_jacchus
ENSLBEG00000005678	snrpb	61	84.247	ENSCAFG00000031109	-	76	80.874	Canis_familiaris
ENSLBEG00000005678	snrpb	70	94.643	ENSCAFG00000006693	-	79	92.350	Canis_familiaris
ENSLBEG00000005678	snrpb	70	94.643	ENSCAFG00020016981	-	76	92.350	Canis_lupus_dingo
ENSLBEG00000005678	snrpb	70	94.643	ENSCHIG00000025449	-	79	92.896	Capra_hircus
ENSLBEG00000005678	snrpb	70	94.643	ENSTSYG00000014498	-	79	92.350	Carlito_syrichta
ENSLBEG00000005678	snrpb	96	74.348	ENSTSYG00000032303	-	66	72.928	Carlito_syrichta
ENSLBEG00000005678	snrpb	69	94.611	ENSCAPG00000012669	SNRPB	79	92.308	Cavia_aperea
ENSLBEG00000005678	snrpb	70	94.643	ENSCPOG00000039408	SNRPB	79	92.350	Cavia_porcellus
ENSLBEG00000005678	snrpb	53	83.465	ENSCCAG00000035140	-	89	84.314	Cebus_capucinus
ENSLBEG00000005678	snrpb	70	94.643	ENSCCAG00000026002	SNRPB	79	92.350	Cebus_capucinus
ENSLBEG00000005678	snrpb	70	94.643	ENSCATG00000030230	SNRPB	79	92.350	Cercocebus_atys
ENSLBEG00000005678	snrpb	70	94.643	ENSCLAG00000012442	SNRPB	77	92.350	Chinchilla_lanigera
ENSLBEG00000005678	snrpb	70	94.643	ENSCSAG00000010840	SNRPB	79	92.350	Chlorocebus_sabaeus
ENSLBEG00000005678	snrpb	70	96.429	ENSCPBG00000026801	SNRPB	80	93.443	Chrysemys_picta_bellii
ENSLBEG00000005678	snrpb	70	94.643	ENSCANG00000019461	SNRPB	79	92.350	Colobus_angolensis_palliatus
ENSLBEG00000005678	snrpb	70	94.643	ENSCGRG00001023046	Snrpb	79	92.350	Cricetulus_griseus_chok1gshd
ENSLBEG00000005678	snrpb	68	94.479	ENSCGRG00000010423	Snrpb	78	92.571	Cricetulus_griseus_crigri
ENSLBEG00000005678	snrpb	100	99.160	ENSCSEG00000020328	snrpb	100	99.160	Cynoglossus_semilaevis
ENSLBEG00000005678	snrpb	100	97.908	ENSDARG00000011125	snrpb	100	97.908	Danio_rerio
ENSLBEG00000005678	snrpb	70	88.690	ENSDNOG00000007896	-	75	86.339	Dasypus_novemcinctus
ENSLBEG00000005678	snrpb	70	94.643	ENSDNOG00000015545	-	76	92.350	Dasypus_novemcinctus
ENSLBEG00000005678	snrpb	67	94.444	ENSDORG00000029558	Snrpb	77	92.655	Dipodomys_ordii
ENSLBEG00000005678	snrpb	77	62.437	FBgn0262601	SmB	74	69.128	Drosophila_melanogaster
ENSLBEG00000005678	snrpb	70	73.810	ENSETEG00000006830	SNRPB	80	72.678	Echinops_telfairi
ENSLBEG00000005678	snrpb	77	79.235	ENSEBUG00000007467	SNRPB	62	87.919	Eptatretus_burgeri
ENSLBEG00000005678	snrpb	70	94.048	ENSEASG00005012991	SNRPB	79	91.803	Equus_asinus_asinus
ENSLBEG00000005678	snrpb	70	94.643	ENSECAG00000011944	SNRPB	79	92.350	Equus_caballus
ENSLBEG00000005678	snrpb	70	94.643	ENSEEUG00000015568	SNRPB	64	92.350	Erinaceus_europaeus
ENSLBEG00000005678	snrpb	99	98.723	ENSELUG00000014564	snrpb	99	98.723	Esox_lucius
ENSLBEG00000005678	snrpb	70	94.643	ENSFCAG00000034090	-	79	92.350	Felis_catus
ENSLBEG00000005678	snrpb	66	96.250	ENSFALG00000004866	SNRPB	75	93.143	Ficedula_albicollis
ENSLBEG00000005678	snrpb	70	94.643	ENSFDAG00000009937	SNRPB	79	92.350	Fukomys_damarensis
ENSLBEG00000005678	snrpb	70	96.429	ENSGALG00000035421	SNRPN	76	92.896	Gallus_gallus
ENSLBEG00000005678	snrpb	94	97.345	ENSGAFG00000019558	snrpb	99	97.345	Gambusia_affinis
ENSLBEG00000005678	snrpb	100	99.160	ENSGACG00000003262	snrpb	100	99.160	Gasterosteus_aculeatus
ENSLBEG00000005678	snrpb	70	96.429	ENSGAGG00000001308	SNRPB	76	93.443	Gopherus_agassizii
ENSLBEG00000005678	snrpb	70	94.643	ENSGGOG00000016138	SNRPB	79	92.350	Gorilla_gorilla
ENSLBEG00000005678	snrpb	100	99.167	ENSHBUG00000008369	snrpb	100	99.167	Haplochromis_burtoni
ENSLBEG00000005678	snrpb	70	94.643	ENSHGLG00000016241	-	79	92.350	Heterocephalus_glaber_female
ENSLBEG00000005678	snrpb	63	86.000	ENSHGLG00000016505	-	86	81.111	Heterocephalus_glaber_female
ENSLBEG00000005678	snrpb	63	86.000	ENSHGLG00100004178	-	86	81.111	Heterocephalus_glaber_male
ENSLBEG00000005678	snrpb	70	94.643	ENSHGLG00100012877	-	79	92.350	Heterocephalus_glaber_male
ENSLBEG00000005678	snrpb	100	99.580	ENSHCOG00000014888	snrpb	100	99.580	Hippocampus_comes
ENSLBEG00000005678	snrpb	99	98.305	ENSIPUG00000024569	SNRPB	99	98.305	Ictalurus_punctatus
ENSLBEG00000005678	snrpb	89	78.404	ENSSTOG00000027821	-	63	94.928	Ictidomys_tridecemlineatus
ENSLBEG00000005678	snrpb	70	92.857	ENSSTOG00000033664	-	76	90.710	Ictidomys_tridecemlineatus
ENSLBEG00000005678	snrpb	70	94.643	ENSJJAG00000024170	Snrpb	79	92.350	Jaculus_jaculus
ENSLBEG00000005678	snrpb	95	97.807	ENSKMAG00000014494	snrpb	94	97.380	Kryptolebias_marmoratus
ENSLBEG00000005678	snrpb	99	95.378	ENSLACG00000011459	SNRPB	99	95.378	Latimeria_chalumnae
ENSLBEG00000005678	snrpb	99	98.729	ENSLOCG00000002687	snrpb	99	98.729	Lepisosteus_oculatus
ENSLBEG00000005678	snrpb	69	90.419	ENSLAFG00000017588	SNRPB	78	89.011	Loxodonta_africana
ENSLBEG00000005678	snrpb	70	94.643	ENSMFAG00000038756	SNRPB	79	92.350	Macaca_fascicularis
ENSLBEG00000005678	snrpb	70	94.643	ENSMMUG00000010050	SNRPB	79	92.350	Macaca_mulatta
ENSLBEG00000005678	snrpb	70	94.643	ENSMNEG00000027954	SNRPB	79	92.350	Macaca_nemestrina
ENSLBEG00000005678	snrpb	70	94.643	ENSMLEG00000022346	SNRPB	79	92.350	Mandrillus_leucophaeus
ENSLBEG00000005678	snrpb	99	99.163	ENSMAMG00000009294	snrpb	97	99.163	Mastacembelus_armatus
ENSLBEG00000005678	snrpb	100	99.167	ENSMZEG00005011856	snrpb	100	99.167	Maylandia_zebra
ENSLBEG00000005678	snrpb	75	83.978	ENSMICG00000015983	-	84	82.514	Microcebus_murinus
ENSLBEG00000005678	snrpb	70	94.643	ENSMICG00000016519	SNRPB	79	92.896	Microcebus_murinus
ENSLBEG00000005678	snrpb	58	78.417	ENSMOCG00000021362	-	76	75.138	Microtus_ochrogaster
ENSLBEG00000005678	snrpb	70	94.048	ENSMOCG00000002892	-	79	92.350	Microtus_ochrogaster
ENSLBEG00000005678	snrpb	95	100.000	ENSMMOG00000013226	snrpb	97	100.000	Mola_mola
ENSLBEG00000005678	snrpb	100	98.333	ENSMALG00000020839	snrpb	81	98.333	Monopterus_albus
ENSLBEG00000005678	snrpb	70	94.643	MGP_CAROLIEiJ_G0024293	Snrpb	74	98.077	Mus_caroli
ENSLBEG00000005678	snrpb	70	94.643	ENSMUSG00000027404	Snrpb	74	98.077	Mus_musculus
ENSLBEG00000005678	snrpb	70	94.643	MGP_PahariEiJ_G0025738	Snrpb	74	98.077	Mus_pahari
ENSLBEG00000005678	snrpb	70	94.643	MGP_SPRETEiJ_G0025213	Snrpb	79	92.350	Mus_spretus
ENSLBEG00000005678	snrpb	70	94.643	ENSMPUG00000009283	SNRPB	79	92.350	Mustela_putorius_furo
ENSLBEG00000005678	snrpb	92	88.235	ENSMLUG00000016951	SNRPB	77	89.305	Myotis_lucifugus
ENSLBEG00000005678	snrpb	70	94.643	ENSNGAG00000012051	Snrpb	79	92.350	Nannospalax_galili
ENSLBEG00000005678	snrpb	95	96.930	ENSNBRG00000006353	snrpb	90	95.319	Neolamprologus_brichardi
ENSLBEG00000005678	snrpb	70	94.643	ENSNLEG00000029067	SNRPB	77	92.308	Nomascus_leucogenys
ENSLBEG00000005678	snrpb	69	94.611	ENSMEUG00000015625	SNRPB	81	92.308	Notamacropus_eugenii
ENSLBEG00000005678	snrpb	70	89.286	ENSODEG00000016060	-	77	87.432	Octodon_degus
ENSLBEG00000005678	snrpb	70	94.643	ENSODEG00000004305	-	79	92.350	Octodon_degus
ENSLBEG00000005678	snrpb	100	99.167	ENSONIG00000000248	snrpb	100	99.167	Oreochromis_niloticus
ENSLBEG00000005678	snrpb	88	90.141	ENSOCUG00000028215	-	76	90.164	Oryctolagus_cuniculus
ENSLBEG00000005678	snrpb	74	88.827	ENSOCUG00000022423	-	92	86.592	Oryctolagus_cuniculus
ENSLBEG00000005678	snrpb	88	65.566	ENSOCUG00000026813	-	78	63.889	Oryctolagus_cuniculus
ENSLBEG00000005678	snrpb	89	88.372	ENSOCUG00000021456	-	76	87.978	Oryctolagus_cuniculus
ENSLBEG00000005678	snrpb	70	94.643	ENSOCUG00000014042	-	76	92.350	Oryctolagus_cuniculus
ENSLBEG00000005678	snrpb	100	98.333	ENSORLG00000021862	snrpb	100	98.333	Oryzias_latipes
ENSLBEG00000005678	snrpb	70	94.643	ENSOGAG00000016149	SNRPB	76	92.350	Otolemur_garnettii
ENSLBEG00000005678	snrpb	70	94.643	ENSOARG00000006740	SNRPB	79	92.896	Ovis_aries
ENSLBEG00000005678	snrpb	70	94.643	ENSPPAG00000036314	SNRPB	79	92.350	Pan_paniscus
ENSLBEG00000005678	snrpb	70	94.643	ENSPPRG00000003233	-	79	92.350	Panthera_pardus
ENSLBEG00000005678	snrpb	69	94.611	ENSPTIG00000007468	SNRPB	79	92.308	Panthera_tigris_altaica
ENSLBEG00000005678	snrpb	70	94.643	ENSPTRG00000013176	SNRPB	79	92.350	Pan_troglodytes
ENSLBEG00000005678	snrpb	70	94.643	ENSPANG00000020362	SNRPB	76	92.350	Papio_anubis
ENSLBEG00000005678	snrpb	99	97.458	ENSPKIG00000002865	snrpb	99	97.458	Paramormyrops_kingsleyae
ENSLBEG00000005678	snrpb	69	96.407	ENSPSIG00000014125	SNRPB	75	93.407	Pelodiscus_sinensis
ENSLBEG00000005678	snrpb	83	96.035	ENSPMGG00000016349	snrpb	97	96.035	Periophthalmus_magnuspinnatus
ENSLBEG00000005678	snrpb	70	94.643	ENSPEMG00000007948	Snrpb	79	92.350	Peromyscus_maniculatus_bairdii
ENSLBEG00000005678	snrpb	69	94.012	ENSPCIG00000004694	SNRPB	76	91.758	Phascolarctos_cinereus
ENSLBEG00000005678	snrpb	63	100.000	ENSPFOG00000011802	snrpb	63	100.000	Poecilia_formosa
ENSLBEG00000005678	snrpb	68	78.756	ENSPLAG00000014130	snrpb	59	100.000	Poecilia_latipinna
ENSLBEG00000005678	snrpb	89	71.698	ENSPREG00000015515	snrpb	62	100.000	Poecilia_reticulata
ENSLBEG00000005678	snrpb	70	94.643	ENSPPYG00000010841	SNRPB	79	92.350	Pongo_abelii
ENSLBEG00000005678	snrpb	70	94.643	ENSPCOG00000013686	SNRPB	79	92.350	Propithecus_coquereli
ENSLBEG00000005678	snrpb	70	93.452	ENSPVAG00000017013	SNRPB	64	90.710	Pteropus_vampyrus
ENSLBEG00000005678	snrpb	100	99.167	ENSPNYG00000014788	snrpb	100	99.167	Pundamilia_nyererei
ENSLBEG00000005678	snrpb	99	98.305	ENSPNAG00000016126	snrpb	99	98.305	Pygocentrus_nattereri
ENSLBEG00000005678	snrpb	70	94.643	ENSRNOG00000006961	Snrpb	79	92.350	Rattus_norvegicus
ENSLBEG00000005678	snrpb	70	94.643	ENSRBIG00000040505	SNRPB	79	93.407	Rhinopithecus_bieti
ENSLBEG00000005678	snrpb	70	94.643	ENSRROG00000036094	SNRPB	79	92.350	Rhinopithecus_roxellana
ENSLBEG00000005678	snrpb	70	94.643	ENSSBOG00000027310	SNRPB	79	92.350	Saimiri_boliviensis_boliviensis
ENSLBEG00000005678	snrpb	70	95.238	ENSSHAG00000010394	SNRPB	76	92.896	Sarcophilus_harrisii
ENSLBEG00000005678	snrpb	99	97.034	ENSSFOG00015002870	snrpb	99	97.034	Scleropages_formosus
ENSLBEG00000005678	snrpb	100	99.580	ENSSMAG00000006766	snrpb	100	99.580	Scophthalmus_maximus
ENSLBEG00000005678	snrpb	100	99.167	ENSSDUG00000018539	snrpb	100	99.167	Seriola_dumerili
ENSLBEG00000005678	snrpb	100	99.167	ENSSLDG00000022391	snrpb	100	99.167	Seriola_lalandi_dorsalis
ENSLBEG00000005678	snrpb	69	79.042	ENSSARG00000003084	SNRPB	78	78.022	Sorex_araneus
ENSLBEG00000005678	snrpb	69	96.407	ENSSPUG00000015659	SNRPB	76	93.407	Sphenodon_punctatus
ENSLBEG00000005678	snrpb	100	99.167	ENSSPAG00000021992	snrpb	100	99.167	Stegastes_partitus
ENSLBEG00000005678	snrpb	95	73.362	ENSSSCG00000011966	-	77	69.399	Sus_scrofa
ENSLBEG00000005678	snrpb	70	94.643	ENSSSCG00000040857	-	79	92.896	Sus_scrofa
ENSLBEG00000005678	snrpb	71	83.529	ENSTGUG00000005684	SNRPB	59	97.143	Taeniopygia_guttata
ENSLBEG00000005678	snrpb	95	99.558	ENSTRUG00000023094	snrpb	99	99.558	Takifugu_rubripes
ENSLBEG00000005678	snrpb	100	99.580	ENSTNIG00000002991	snrpb	100	99.580	Tetraodon_nigroviridis
ENSLBEG00000005678	snrpb	70	94.643	ENSUAMG00000005984	-	88	91.803	Ursus_americanus
ENSLBEG00000005678	snrpb	90	78.037	ENSUMAG00000002123	-	63	95.588	Ursus_maritimus
ENSLBEG00000005678	snrpb	70	94.048	ENSVVUG00000025654	-	76	91.803	Vulpes_vulpes
ENSLBEG00000005678	snrpb	93	75.330	ENSVVUG00000010086	-	78	74.725	Vulpes_vulpes
ENSLBEG00000005678	snrpb	63	98.000	ENSXETG00000027266	snrpb	77	92.896	Xenopus_tropicalis
ENSLBEG00000005678	snrpb	89	68.075	ENSXMAG00000028767	snrpb	58	100.000	Xiphophorus_maculatus