EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000005742 (Gene tree)
Gene ID: 109985420
Gene Symbol: rnaseh2c
Alias: fc08g11|im:5617510|si:dkey-147f20.5|wu:fc08g11
Full Name: ribonuclease H2 subunit C
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 3969 bases
Position: chrFKLU01000082.1:346484-350452
Accession: 109985420
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000007450	RNase_H2_suC	PF08615.11	1.7e-17	1	1
ENSLBEP00000007429	RNase_H2_suC	PF08615.11	3.9e-17	1	1
ENSLBEP00000007531	RNase_H2_suC	PF08615.11	4.2e-17	1	1
ENSLBEP00000007485	RNase_H2_suC	PF08615.11	1.4e-15	1	1
ENSLBEP00000007495	RNase_H2_suC	PF08615.11	1.8e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000007886	-	441	-	ENSLBEP00000007495	146 (aa)	-	-
ENSLBET00000007924	-	468	-	ENSLBEP00000007531	155 (aa)	-	-
ENSLBET00000007841	-	414	XM_020635746	ENSLBEP00000007450	137 (aa)	XP_020491402	UPI0009B39FA8
ENSLBET00000007820	-	459	-	ENSLBEP00000007429	152 (aa)	-	-
ENSLBET00000007877	-	414	-	ENSLBEP00000007485	137 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000005742's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000005742's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000005742	rnaseh2c	100	87.591	ENSAPOG00000012901	rnaseh2c	99	87.591	Acanthochromis_polyacanthus
ENSLBEG00000005742	rnaseh2c	100	80.292	ENSACIG00000022433	rnaseh2c	100	80.292	Amphilophus_citrinellus
ENSLBEG00000005742	rnaseh2c	100	86.861	ENSAOCG00000016855	rnaseh2c	100	86.861	Amphiprion_ocellaris
ENSLBEG00000005742	rnaseh2c	100	87.591	ENSAPEG00000009850	rnaseh2c	100	87.591	Amphiprion_percula
ENSLBEG00000005742	rnaseh2c	100	83.212	ENSATEG00000014395	rnaseh2c	100	83.212	Anabas_testudineus
ENSLBEG00000005742	rnaseh2c	100	80.292	ENSACLG00000016950	rnaseh2c	100	80.292	Astatotilapia_calliptera
ENSLBEG00000005742	rnaseh2c	99	64.706	ENSAMXG00000001210	rnaseh2c	100	64.706	Astyanax_mexicanus
ENSLBEG00000005742	rnaseh2c	99	51.111	ENSCPBG00000023408	-	96	51.111	Chrysemys_picta_bellii
ENSLBEG00000005742	rnaseh2c	100	78.102	ENSCSEG00000005808	rnaseh2c	99	78.102	Cynoglossus_semilaevis
ENSLBEG00000005742	rnaseh2c	100	79.562	ENSCVAG00000006337	rnaseh2c	100	79.562	Cyprinodon_variegatus
ENSLBEG00000005742	rnaseh2c	100	64.234	ENSDARG00000089637	rnaseh2c	99	64.234	Danio_rerio
ENSLBEG00000005742	rnaseh2c	77	52.778	ENSEBUG00000014939	rnaseh2c	75	50.000	Eptatretus_burgeri
ENSLBEG00000005742	rnaseh2c	99	67.647	ENSELUG00000007345	rnaseh2c	99	67.647	Esox_lucius
ENSLBEG00000005742	rnaseh2c	96	79.389	ENSFHEG00000002419	rnaseh2c	95	80.153	Fundulus_heteroclitus
ENSLBEG00000005742	rnaseh2c	66	74.444	ENSGMOG00000008727	rnaseh2c	100	74.725	Gadus_morhua
ENSLBEG00000005742	rnaseh2c	100	78.102	ENSGAFG00000016755	rnaseh2c	83	78.102	Gambusia_affinis
ENSLBEG00000005742	rnaseh2c	99	52.174	ENSGAGG00000008193	-	96	51.852	Gopherus_agassizii
ENSLBEG00000005742	rnaseh2c	100	81.752	ENSHBUG00000012806	rnaseh2c	100	81.752	Haplochromis_burtoni
ENSLBEG00000005742	rnaseh2c	100	75.182	ENSHCOG00000007177	rnaseh2c	100	75.182	Hippocampus_comes
ENSLBEG00000005742	rnaseh2c	100	63.504	ENSIPUG00000018044	rnaseh2c	100	63.504	Ictalurus_punctatus
ENSLBEG00000005742	rnaseh2c	100	78.102	ENSKMAG00000004184	rnaseh2c	100	78.102	Kryptolebias_marmoratus
ENSLBEG00000005742	rnaseh2c	95	54.615	ENSLACG00000010120	-	93	54.135	Latimeria_chalumnae
ENSLBEG00000005742	rnaseh2c	100	78.832	ENSMAMG00000021610	rnaseh2c	100	78.832	Mastacembelus_armatus
ENSLBEG00000005742	rnaseh2c	100	81.022	ENSMZEG00005004796	rnaseh2c	100	81.022	Maylandia_zebra
ENSLBEG00000005742	rnaseh2c	100	83.942	ENSMMOG00000002869	rnaseh2c	100	83.942	Mola_mola
ENSLBEG00000005742	rnaseh2c	100	84.058	ENSMALG00000012198	rnaseh2c	100	84.058	Monopterus_albus
ENSLBEG00000005742	rnaseh2c	100	81.752	ENSNBRG00000001462	rnaseh2c	100	81.752	Neolamprologus_brichardi
ENSLBEG00000005742	rnaseh2c	100	81.022	ENSONIG00000005338	rnaseh2c	99	81.022	Oreochromis_niloticus
ENSLBEG00000005742	rnaseh2c	100	75.182	ENSORLG00000023473	rnaseh2c	100	75.182	Oryzias_latipes
ENSLBEG00000005742	rnaseh2c	100	75.182	ENSORLG00020019053	rnaseh2c	91	75.182	Oryzias_latipes_hni
ENSLBEG00000005742	rnaseh2c	100	75.912	ENSORLG00015017067	rnaseh2c	91	75.912	Oryzias_latipes_hsok
ENSLBEG00000005742	rnaseh2c	100	74.453	ENSOMEG00000018607	rnaseh2c	100	74.453	Oryzias_melastigma
ENSLBEG00000005742	rnaseh2c	100	60.584	ENSPKIG00000019331	rnaseh2c	100	60.584	Paramormyrops_kingsleyae
ENSLBEG00000005742	rnaseh2c	100	77.372	ENSPFOG00000009415	rnaseh2c	100	77.372	Poecilia_formosa
ENSLBEG00000005742	rnaseh2c	100	76.642	ENSPLAG00000023330	rnaseh2c	100	76.642	Poecilia_latipinna
ENSLBEG00000005742	rnaseh2c	100	78.102	ENSPMEG00000003696	rnaseh2c	100	78.102	Poecilia_mexicana
ENSLBEG00000005742	rnaseh2c	100	70.946	ENSPREG00000015384	rnaseh2c	73	70.946	Poecilia_reticulata
ENSLBEG00000005742	rnaseh2c	100	81.752	ENSPNYG00000014766	rnaseh2c	100	81.752	Pundamilia_nyererei
ENSLBEG00000005742	rnaseh2c	99	63.235	ENSPNAG00000019111	rnaseh2c	99	63.235	Pygocentrus_nattereri
ENSLBEG00000005742	rnaseh2c	99	67.647	ENSSFOG00015005760	rnaseh2c	99	68.421	Scleropages_formosus
ENSLBEG00000005742	rnaseh2c	100	85.401	ENSSMAG00000017738	rnaseh2c	100	85.401	Scophthalmus_maximus
ENSLBEG00000005742	rnaseh2c	100	85.401	ENSSDUG00000017285	rnaseh2c	100	85.401	Seriola_dumerili
ENSLBEG00000005742	rnaseh2c	100	86.861	ENSSLDG00000016030	rnaseh2c	100	86.861	Seriola_lalandi_dorsalis
ENSLBEG00000005742	rnaseh2c	94	49.242	ENSSPUG00000000842	-	87	48.872	Sphenodon_punctatus
ENSLBEG00000005742	rnaseh2c	100	86.131	ENSSPAG00000007536	rnaseh2c	100	86.131	Stegastes_partitus
ENSLBEG00000005742	rnaseh2c	100	75.912	ENSTRUG00000021845	rnaseh2c	100	75.912	Takifugu_rubripes
ENSLBEG00000005742	rnaseh2c	100	80.292	ENSTNIG00000000431	rnaseh2c	100	80.292	Tetraodon_nigroviridis
ENSLBEG00000005742	rnaseh2c	99	48.148	ENSXETG00000032466	-	98	48.148	Xenopus_tropicalis
ENSLBEG00000005742	rnaseh2c	100	77.372	ENSXCOG00000001611	rnaseh2c	100	77.372	Xiphophorus_couchianus
ENSLBEG00000005742	rnaseh2c	100	80.292	ENSXMAG00000003147	rnaseh2c	83	80.292	Xiphophorus_maculatus