EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000005981 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 12871 bases
Position: chrFKLU01000499.1:288310-301180
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000007742	MMR_HSR1	PF01926.23	8.6e-07	1	1
ENSLBEP00000007763	MMR_HSR1	PF01926.23	9.7e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000008157	-	603	-	ENSLBEP00000007763	200 (aa)	-	-
ENSLBET00000008132	-	1464	-	ENSLBEP00000007742	160 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000005981's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000005981's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000005981	-	100	56.422	ENSLBEG00000016446	rab25b	100	56.422
ENSLBEG00000005981	-	96	44.231	ENSLBEG00000028426	RAB1A	99	44.231
ENSLBEG00000005981	-	100	89.450	ENSLBEG00000015248	rab11bb	100	89.450
ENSLBEG00000005981	-	71	37.423	ENSLBEG00000017798	-	78	37.423
ENSLBEG00000005981	-	72	31.288	ENSLBEG00000025705	si:ch73-116o1.2	82	32.955
ENSLBEG00000005981	-	73	36.527	ENSLBEG00000020582	rab9a	82	36.527
ENSLBEG00000005981	-	75	42.771	ENSLBEG00000013463	rab15	78	42.771
ENSLBEG00000005981	-	100	79.263	ENSLBEG00000026857	rab11a	100	79.263
ENSLBEG00000005981	-	76	41.520	ENSLBEG00000001313	RAB39B	80	41.520
ENSLBEG00000005981	-	73	30.058	ENSLBEG00000016218	rasl11a	66	30.058
ENSLBEG00000005981	-	60	41.667	ENSLBEG00000027819	rab34b	58	39.316
ENSLBEG00000005981	-	81	34.737	ENSLBEG00000027691	RAB17	79	34.737
ENSLBEG00000005981	-	82	35.135	ENSLBEG00000014427	rab33a	81	35.135
ENSLBEG00000005981	-	79	42.045	ENSLBEG00000022630	-	83	42.045
ENSLBEG00000005981	-	100	92.166	ENSLBEG00000004172	-	100	92.166
ENSLBEG00000005981	-	70	34.395	ENSLBEG00000019372	rab6bb	75	34.395
ENSLBEG00000005981	-	66	32.667	ENSLBEG00000001905	hrasb	85	33.951
ENSLBEG00000005981	-	94	33.654	ENSLBEG00000002926	si:dkey-34d22.5	91	33.654
ENSLBEG00000005981	-	93	40.887	ENSLBEG00000002516	rab5aa	85	40.887
ENSLBEG00000005981	-	70	35.669	ENSLBEG00000003748	rab6a	75	35.669
ENSLBEG00000005981	-	69	32.704	ENSLBEG00000018180	si:dkey-13a21.4	78	32.704
ENSLBEG00000005981	-	68	33.333	ENSLBEG00000003132	rras	81	34.545
ENSLBEG00000005981	-	99	74.419	ENSLBEG00000016417	rab11al	99	74.419
ENSLBEG00000005981	-	72	45.342	ENSLBEG00000004128	rab5c	89	39.901
ENSLBEG00000005981	-	75	50.299	ENSLBEG00000019435	rab14	78	50.299
ENSLBEG00000005981	-	68	34.839	ENSLBEG00000028450	kras	87	35.928
ENSLBEG00000005981	-	75	50.877	ENSLBEG00000003101	rab4a	80	50.877
ENSLBEG00000005981	-	95	30.189	ENSLBEG00000005018	rab32b	95	30.189
ENSLBEG00000005981	-	92	37.313	ENSLBEG00000027539	-	86	37.313
ENSLBEG00000005981	-	71	37.423	ENSLBEG00000001796	RAB7A	78	37.423
ENSLBEG00000005981	-	70	35.669	ENSLBEG00000008746	RAB41	74	35.669
ENSLBEG00000005981	-	82	36.216	ENSLBEG00000005128	-	81	36.216
ENSLBEG00000005981	-	99	41.071	ENSLBEG00000027781	rab1ab	99	43.602
ENSLBEG00000005981	-	72	39.752	ENSLBEG00000003235	rab22a	83	39.752
ENSLBEG00000005981	-	71	30.000	ENSLBEG00000014885	rheb	86	30.000
ENSLBEG00000005981	-	73	31.515	ENSLBEG00000027628	si:cabz01085950.1	82	31.515
ENSLBEG00000005981	-	96	40.580	ENSLBEG00000001618	rab35b	99	40.580
ENSLBEG00000005981	-	64	52.427	ENSLBEG00000005861	rab18a	76	43.210
ENSLBEG00000005981	-	79	38.333	ENSLBEG00000013756	rab12	84	36.019
ENSLBEG00000005981	-	75	50.000	ENSLBEG00000021040	rab1ba	83	50.000
ENSLBEG00000005981	-	78	33.333	ENSLBEG00000013176	rab23	79	34.568
ENSLBEG00000005981	-	71	44.025	ENSLBEG00000026989	RAB15	75	44.025
ENSLBEG00000005981	-	85	40.860	ENSLBEG00000001146	rab30	90	40.860
ENSLBEG00000005981	-	85	30.216	ENSLBEG00000018812	RAB29	91	30.286
ENSLBEG00000005981	-	95	41.148	ENSLBEG00000027226	-	73	46.199
ENSLBEG00000005981	-	94	39.706	ENSLBEG00000026779	rab13	97	39.706
ENSLBEG00000005981	-	77	36.782	ENSLBEG00000026777	rab33ba	76	36.782
ENSLBEG00000005981	-	79	41.618	ENSLBEG00000007681	si:dkey-16l2.16	98	38.164
ENSLBEG00000005981	-	77	39.306	ENSLBEG00000025798	zgc:101559	74	39.306
ENSLBEG00000005981	-	68	38.532	ENSLBEG00000003369	-	92	38.532
ENSLBEG00000005981	-	100	88.479	ENSLBEG00000006087	rab11ba	100	88.479
ENSLBEG00000005981	-	82	39.891	ENSLBEG00000001193	rab42a	84	39.891
ENSLBEG00000005981	-	64	52.427	ENSLBEG00000019428	rab18b	80	42.683
ENSLBEG00000005981	-	75	39.333	ENSLBEG00000015149	-	70	39.333
ENSLBEG00000005981	-	78	37.853	ENSLBEG00000011478	rab9b	80	37.853
ENSLBEG00000005981	-	72	44.099	ENSLBEG00000010408	-	73	44.099
ENSLBEG00000005981	-	62	44.000	ENSLBEG00000018063	-	62	40.667
ENSLBEG00000005981	-	93	31.628	ENSLBEG00000026006	rab34a	77	31.628
ENSLBEG00000005981	-	85	30.216	ENSLBEG00000006152	-	85	30.286
ENSLBEG00000005981	-	89	31.000	ENSLBEG00000026930	rab6ba	92	31.000
ENSLBEG00000005981	-	75	49.102	ENSLBEG00000026790	-	78	49.102
ENSLBEG00000005981	-	98	56.542	ENSLBEG00000002367	rab25a	97	56.542
ENSLBEG00000005981	-	76	30.769	ENSLBEG00000003644	rabl2	72	30.769
ENSLBEG00000005981	-	77	52.047	ENSLBEG00000020796	rab2a	99	45.498
ENSLBEG00000005981	-	96	41.706	ENSLBEG00000005791	-	99	41.706

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000005981	-	100	89.450	ENSAPOG00000023455	rab11bb	100	89.450	Acanthochromis_polyacanthus
ENSLBEG00000005981	-	100	91.743	ENSACIG00000024376	-	100	91.743	Amphilophus_citrinellus
ENSLBEG00000005981	-	100	77.523	ENSACIG00000019631	rab11bb	100	77.523	Amphilophus_citrinellus
ENSLBEG00000005981	-	100	89.450	ENSAOCG00000018239	rab11bb	100	89.450	Amphiprion_ocellaris
ENSLBEG00000005981	-	100	91.743	ENSAOCG00000018849	-	100	91.743	Amphiprion_ocellaris
ENSLBEG00000005981	-	100	89.450	ENSAPEG00000016590	rab11bb	100	89.450	Amphiprion_percula
ENSLBEG00000005981	-	100	91.284	ENSATEG00000023725	-	100	91.284	Anabas_testudineus
ENSLBEG00000005981	-	100	89.450	ENSATEG00000017696	rab11bb	100	89.450	Anabas_testudineus
ENSLBEG00000005981	-	94	90.291	ENSAPLG00000011046	-	94	90.291	Anas_platyrhynchos
ENSLBEG00000005981	-	100	89.450	ENSACLG00000007076	rab11bb	100	89.450	Astatotilapia_calliptera
ENSLBEG00000005981	-	100	91.743	ENSACLG00000005446	-	100	91.743	Astatotilapia_calliptera
ENSLBEG00000005981	-	100	88.532	ENSAMXG00000037623	-	100	88.532	Astyanax_mexicanus
ENSLBEG00000005981	-	100	90.826	ENSAMXG00000042655	rab11bb	100	90.826	Astyanax_mexicanus
ENSLBEG00000005981	-	100	88.991	ENSBTAG00000002475	RAB11B	100	88.991	Bos_taurus
ENSLBEG00000005981	-	96	87.081	ENSCHIG00000022426	-	93	87.081	Capra_hircus
ENSLBEG00000005981	-	100	88.991	ENSCATG00000029188	-	100	88.991	Cercocebus_atys
ENSLBEG00000005981	-	100	89.908	ENSCPBG00000017056	-	100	89.908	Chrysemys_picta_bellii
ENSLBEG00000005981	-	100	89.450	ENSCSEG00000012149	rab11bb	100	89.450	Cynoglossus_semilaevis
ENSLBEG00000005981	-	100	91.284	ENSCSEG00000007239	-	100	91.284	Cynoglossus_semilaevis
ENSLBEG00000005981	-	100	90.826	ENSCVAG00000019718	-	100	90.826	Cyprinodon_variegatus
ENSLBEG00000005981	-	100	89.450	ENSCVAG00000017021	-	100	89.450	Cyprinodon_variegatus
ENSLBEG00000005981	-	100	87.615	ENSCVAG00000019751	-	100	87.615	Cyprinodon_variegatus
ENSLBEG00000005981	-	100	89.908	ENSDARG00000090086	rab11bb	100	89.908	Danio_rerio
ENSLBEG00000005981	-	99	86.636	ENSETEG00000000905	-	99	86.636	Echinops_telfairi
ENSLBEG00000005981	-	99	86.512	ENSEASG00005003708	-	99	86.512	Equus_asinus_asinus
ENSLBEG00000005981	-	99	86.512	ENSECAG00000000716	RAB11B	99	86.512	Equus_caballus
ENSLBEG00000005981	-	100	91.244	ENSELUG00000020948	-	99	91.244	Esox_lucius
ENSLBEG00000005981	-	100	90.323	ENSELUG00000000916	-	100	90.323	Esox_lucius
ENSLBEG00000005981	-	100	88.940	ENSELUG00000021148	rab11bb	100	88.940	Esox_lucius
ENSLBEG00000005981	-	100	89.908	ENSFALG00000011828	-	100	89.908	Ficedula_albicollis
ENSLBEG00000005981	-	100	89.450	ENSFHEG00000018353	rab11bb	100	89.450	Fundulus_heteroclitus
ENSLBEG00000005981	-	100	91.284	ENSFHEG00000022676	-	100	91.284	Fundulus_heteroclitus
ENSLBEG00000005981	-	100	89.450	ENSGMOG00000009211	rab11bb	100	89.450	Gadus_morhua
ENSLBEG00000005981	-	99	87.037	ENSGMOG00000009668	-	99	87.037	Gadus_morhua
ENSLBEG00000005981	-	100	89.908	ENSGALG00000000613	RAB11B	100	89.908	Gallus_gallus
ENSLBEG00000005981	-	100	89.450	ENSGAFG00000007102	rab11bb	100	89.450	Gambusia_affinis
ENSLBEG00000005981	-	100	88.991	ENSGACG00000015479	rab11bb	100	88.991	Gasterosteus_aculeatus
ENSLBEG00000005981	-	100	87.615	ENSGACG00000013297	-	99	87.615	Gasterosteus_aculeatus
ENSLBEG00000005981	-	100	88.991	ENSGGOG00000014516	RAB11B	100	88.991	Gorilla_gorilla
ENSLBEG00000005981	-	100	91.743	ENSHBUG00000009947	-	100	91.743	Haplochromis_burtoni
ENSLBEG00000005981	-	100	89.450	ENSHBUG00000014777	rab11bb	100	89.450	Haplochromis_burtoni
ENSLBEG00000005981	-	100	88.532	ENSHCOG00000000954	-	100	88.532	Hippocampus_comes
ENSLBEG00000005981	-	100	89.908	ENSHCOG00000002423	rab11bb	100	89.908	Hippocampus_comes
ENSLBEG00000005981	-	100	86.239	ENSHCOG00000000985	-	100	86.239	Hippocampus_comes
ENSLBEG00000005981	-	100	90.367	ENSIPUG00000019927	rab11bb	100	90.367	Ictalurus_punctatus
ENSLBEG00000005981	-	100	88.532	ENSIPUG00000025100	rab11b	100	88.532	Ictalurus_punctatus
ENSLBEG00000005981	-	100	89.450	ENSKMAG00000009033	rab11bb	100	89.450	Kryptolebias_marmoratus
ENSLBEG00000005981	-	100	91.743	ENSKMAG00000006170	-	100	91.743	Kryptolebias_marmoratus
ENSLBEG00000005981	-	100	89.908	ENSLACG00000016857	-	100	89.908	Latimeria_chalumnae
ENSLBEG00000005981	-	100	88.991	ENSMFAG00000003654	RAB11B	100	88.991	Macaca_fascicularis
ENSLBEG00000005981	-	100	88.991	ENSMLEG00000030601	-	100	88.991	Mandrillus_leucophaeus
ENSLBEG00000005981	-	100	88.991	ENSMAMG00000006378	rab11bb	100	88.991	Mastacembelus_armatus
ENSLBEG00000005981	-	100	90.367	ENSMAMG00000018533	-	100	90.367	Mastacembelus_armatus
ENSLBEG00000005981	-	100	91.743	ENSMZEG00005010975	-	100	91.743	Maylandia_zebra
ENSLBEG00000005981	-	100	89.450	ENSMZEG00005003352	rab11bb	100	89.450	Maylandia_zebra
ENSLBEG00000005981	-	100	88.991	ENSMICG00000034065	-	100	88.991	Microcebus_murinus
ENSLBEG00000005981	-	100	91.743	ENSMMOG00000001250	-	100	91.743	Mola_mola
ENSLBEG00000005981	-	99	87.558	ENSMMOG00000001238	-	99	87.558	Mola_mola
ENSLBEG00000005981	-	94	88.780	ENSMMOG00000007917	rab11bb	100	88.780	Mola_mola
ENSLBEG00000005981	-	100	89.908	ENSMODG00000003841	-	100	89.908	Monodelphis_domestica
ENSLBEG00000005981	-	100	89.450	ENSMALG00000022187	rab11bb	100	89.450	Monopterus_albus
ENSLBEG00000005981	-	94	80.676	ENSMLUG00000006677	-	100	80.676	Myotis_lucifugus
ENSLBEG00000005981	-	100	89.450	ENSNBRG00000000372	rab11bb	100	89.450	Neolamprologus_brichardi
ENSLBEG00000005981	-	100	91.743	ENSNBRG00000023885	-	100	91.743	Neolamprologus_brichardi
ENSLBEG00000005981	-	100	89.908	ENSMEUG00000003686	-	100	89.908	Notamacropus_eugenii
ENSLBEG00000005981	-	100	89.450	ENSONIG00000010435	rab11bb	100	89.450	Oreochromis_niloticus
ENSLBEG00000005981	-	100	91.743	ENSONIG00000002544	-	100	91.743	Oreochromis_niloticus
ENSLBEG00000005981	-	65	93.269	ENSOANG00000031567	-	75	93.269	Ornithorhynchus_anatinus
ENSLBEG00000005981	-	99	89.862	ENSORLG00000015284	-	72	89.862	Oryzias_latipes
ENSLBEG00000005981	-	100	88.991	ENSORLG00000013938	rab11bb	100	88.991	Oryzias_latipes
ENSLBEG00000005981	-	100	88.991	ENSORLG00020019393	rab11bb	100	88.991	Oryzias_latipes_hni
ENSLBEG00000005981	-	99	89.862	ENSORLG00020020844	RAB11B	99	89.862	Oryzias_latipes_hni
ENSLBEG00000005981	-	99	89.862	ENSORLG00015016999	RAB11B	99	89.862	Oryzias_latipes_hsok
ENSLBEG00000005981	-	100	88.991	ENSORLG00015020173	rab11bb	100	88.991	Oryzias_latipes_hsok
ENSLBEG00000005981	-	100	89.450	ENSOMEG00000017806	-	100	89.450	Oryzias_melastigma
ENSLBEG00000005981	-	100	90.826	ENSOMEG00000002562	-	100	90.826	Oryzias_melastigma
ENSLBEG00000005981	-	100	88.991	ENSPPAG00000028589	-	100	88.991	Pan_paniscus
ENSLBEG00000005981	-	100	88.991	ENSPTRG00000010422	RAB11B	100	88.991	Pan_troglodytes
ENSLBEG00000005981	-	100	88.991	ENSPANG00000007765	-	100	88.991	Papio_anubis
ENSLBEG00000005981	-	100	89.450	ENSPKIG00000011640	rab11bb	100	89.450	Paramormyrops_kingsleyae
ENSLBEG00000005981	-	98	88.785	ENSPKIG00000001389	-	69	88.785	Paramormyrops_kingsleyae
ENSLBEG00000005981	-	100	88.991	ENSPKIG00000011703	-	100	88.991	Paramormyrops_kingsleyae
ENSLBEG00000005981	-	98	85.845	ENSPSIG00000010242	-	85	85.845	Pelodiscus_sinensis
ENSLBEG00000005981	-	100	90.367	ENSPMGG00000014333	-	100	90.367	Periophthalmus_magnuspinnatus
ENSLBEG00000005981	-	99	86.636	ENSPMGG00000014336	-	99	86.636	Periophthalmus_magnuspinnatus
ENSLBEG00000005981	-	100	89.450	ENSPMGG00000009435	rab11bb	100	89.450	Periophthalmus_magnuspinnatus
ENSLBEG00000005981	-	97	89.151	ENSPCIG00000020371	-	99	89.151	Phascolarctos_cinereus
ENSLBEG00000005981	-	100	89.450	ENSPFOG00000024114	-	100	89.450	Poecilia_formosa
ENSLBEG00000005981	-	100	91.743	ENSPFOG00000006224	-	100	91.743	Poecilia_formosa
ENSLBEG00000005981	-	100	89.450	ENSPLAG00000001598	rab11bb	100	89.450	Poecilia_latipinna
ENSLBEG00000005981	-	100	91.743	ENSPLAG00000014207	-	100	91.743	Poecilia_latipinna
ENSLBEG00000005981	-	100	89.450	ENSPMEG00000012389	rab11bb	100	89.450	Poecilia_mexicana
ENSLBEG00000005981	-	100	91.743	ENSPMEG00000007842	-	100	91.743	Poecilia_mexicana
ENSLBEG00000005981	-	100	91.284	ENSPREG00000006336	-	100	91.284	Poecilia_reticulata
ENSLBEG00000005981	-	100	89.450	ENSPREG00000014269	rab11bb	100	89.450	Poecilia_reticulata
ENSLBEG00000005981	-	100	89.450	ENSPNYG00000004098	rab11bb	100	89.450	Pundamilia_nyererei
ENSLBEG00000005981	-	100	91.743	ENSPNYG00000019611	-	100	91.743	Pundamilia_nyererei
ENSLBEG00000005981	-	100	88.991	ENSRROG00000037812	-	100	88.991	Rhinopithecus_roxellana
ENSLBEG00000005981	-	97	88.679	ENSSHAG00000006816	-	97	88.679	Sarcophilus_harrisii
ENSLBEG00000005981	-	100	88.991	ENSSFOG00015009042	rab11bb	100	88.991	Scleropages_formosus
ENSLBEG00000005981	-	100	77.073	ENSSFOG00015006245	-	100	77.073	Scleropages_formosus
ENSLBEG00000005981	-	100	88.073	ENSSMAG00000018613	-	100	88.073	Scophthalmus_maximus
ENSLBEG00000005981	-	100	88.991	ENSSMAG00000004922	rab11bb	100	88.991	Scophthalmus_maximus
ENSLBEG00000005981	-	100	91.743	ENSSDUG00000002934	-	100	91.743	Seriola_dumerili
ENSLBEG00000005981	-	100	89.450	ENSSDUG00000013558	rab11bb	100	89.450	Seriola_dumerili
ENSLBEG00000005981	-	100	91.743	ENSSLDG00000005275	-	100	91.743	Seriola_lalandi_dorsalis
ENSLBEG00000005981	-	100	89.450	ENSSLDG00000020676	rab11bb	100	89.450	Seriola_lalandi_dorsalis
ENSLBEG00000005981	-	100	89.908	ENSSPUG00000002243	-	100	89.908	Sphenodon_punctatus
ENSLBEG00000005981	-	100	91.743	ENSSPAG00000014559	-	100	91.743	Stegastes_partitus
ENSLBEG00000005981	-	100	89.450	ENSSPAG00000011419	rab11bb	100	89.450	Stegastes_partitus
ENSLBEG00000005981	-	100	89.908	ENSTGUG00000000084	-	100	89.908	Taeniopygia_guttata
ENSLBEG00000005981	-	100	89.450	ENSTRUG00000022029	rab11bb	100	89.450	Takifugu_rubripes
ENSLBEG00000005981	-	99	87.558	ENSTRUG00000021614	-	99	87.558	Takifugu_rubripes
ENSLBEG00000005981	-	99	91.204	ENSTRUG00000021619	-	100	91.204	Takifugu_rubripes
ENSLBEG00000005981	-	99	91.204	ENSTNIG00000013182	-	100	91.204	Tetraodon_nigroviridis
ENSLBEG00000005981	-	99	87.097	ENSTNIG00000013184	-	99	87.097	Tetraodon_nigroviridis
ENSLBEG00000005981	-	93	88.177	ENSTNIG00000002003	-	100	88.177	Tetraodon_nigroviridis
ENSLBEG00000005981	-	100	88.532	ENSTNIG00000011081	rab11bb	100	88.532	Tetraodon_nigroviridis
ENSLBEG00000005981	-	94	89.268	ENSUAMG00000006639	-	99	89.268	Ursus_americanus
ENSLBEG00000005981	-	100	89.041	ENSXETG00000025484	rab11b.1	99	89.041	Xenopus_tropicalis
ENSLBEG00000005981	-	100	89.450	ENSXCOG00000008042	-	100	89.450	Xiphophorus_couchianus
ENSLBEG00000005981	-	100	91.743	ENSXCOG00000009190	-	100	91.743	Xiphophorus_couchianus
ENSLBEG00000005981	-	100	91.284	ENSXMAG00000024840	-	100	91.284	Xiphophorus_maculatus
ENSLBEG00000005981	-	100	89.450	ENSXMAG00000011926	rab11bb	100	89.450	Xiphophorus_maculatus