EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000006298 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 4227 bases
Position: chrFKLU01000390.1:239849-244075
Accession: 109996900
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000008170	CMS1	PF14617.6	4.5e-30	1	1
ENSLBEP00000008170	DEAD	PF00270.29	7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000008579	-	726	XM_020651237	ENSLBEP00000008170	241 (aa)	XP_020506893	-

Gene Model

Click here to download ENSLBEG00000006298's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000006298's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000006298	cmss1	83	58.128	ENSG00000184220	CMSS1	98	49.383	Homo_sapiens
ENSLBEG00000006298	cmss1	83	81.373	ENSAPOG00000010604	cmss1	97	74.793	Acanthochromis_polyacanthus
ENSLBEG00000006298	cmss1	83	58.333	ENSAMEG00000004092	CMSS1	78	58.333	Ailuropoda_melanoleuca
ENSLBEG00000006298	cmss1	99	65.399	ENSACIG00000021854	cmss1	100	66.160	Amphilophus_citrinellus
ENSLBEG00000006298	cmss1	83	80.882	ENSAOCG00000013361	cmss1	70	80.882	Amphiprion_ocellaris
ENSLBEG00000006298	cmss1	83	80.882	ENSAPEG00000005829	cmss1	91	69.403	Amphiprion_percula
ENSLBEG00000006298	cmss1	96	73.577	ENSATEG00000008209	cmss1	93	70.472	Anabas_testudineus
ENSLBEG00000006298	cmss1	83	60.591	ENSAPLG00000010542	CMSS1	88	60.591	Anas_platyrhynchos
ENSLBEG00000006298	cmss1	93	54.583	ENSACAG00000011065	CMSS1	74	59.113	Anolis_carolinensis
ENSLBEG00000006298	cmss1	83	57.635	ENSANAG00000023565	CMSS1	84	52.500	Aotus_nancymaae
ENSLBEG00000006298	cmss1	92	75.664	ENSACLG00000027294	cmss1	91	67.910	Astatotilapia_calliptera
ENSLBEG00000006298	cmss1	82	65.174	ENSAMXG00000002046	cmss1	69	65.686	Astyanax_mexicanus
ENSLBEG00000006298	cmss1	83	57.635	ENSBTAG00000013663	CMSS1	80	52.500	Bos_taurus
ENSLBEG00000006298	cmss1	83	59.606	ENSCJAG00000000610	CMSS1	84	53.750	Callithrix_jacchus
ENSLBEG00000006298	cmss1	83	59.606	ENSCAFG00000009230	CMSS1	73	59.606	Canis_familiaris
ENSLBEG00000006298	cmss1	83	56.650	ENSCAFG00020024156	-	63	56.650	Canis_lupus_dingo
ENSLBEG00000006298	cmss1	83	59.606	ENSCAFG00020009464	-	74	59.606	Canis_lupus_dingo
ENSLBEG00000006298	cmss1	83	57.635	ENSCHIG00000013003	CMSS1	80	52.500	Capra_hircus
ENSLBEG00000006298	cmss1	83	59.113	ENSTSYG00000009266	CMSS1	85	53.750	Carlito_syrichta
ENSLBEG00000006298	cmss1	76	51.337	ENSCAPG00000013584	CMSS1	87	51.337	Cavia_aperea
ENSLBEG00000006298	cmss1	82	58.706	ENSCPOG00000014680	CMSS1	72	59.113	Cavia_porcellus
ENSLBEG00000006298	cmss1	83	59.113	ENSCCAG00000034685	CMSS1	84	53.750	Cebus_capucinus
ENSLBEG00000006298	cmss1	83	59.113	ENSCATG00000031980	CMSS1	85	53.333	Cercocebus_atys
ENSLBEG00000006298	cmss1	82	57.214	ENSCLAG00000011241	CMSS1	95	51.667	Chinchilla_lanigera
ENSLBEG00000006298	cmss1	83	59.113	ENSCSAG00000006024	CMSS1	90	53.333	Chlorocebus_sabaeus
ENSLBEG00000006298	cmss1	82	47.000	ENSCHOG00000012098	CMSS1	84	44.033	Choloepus_hoffmanni
ENSLBEG00000006298	cmss1	59	45.070	ENSCING00000014848	-	76	45.070	Ciona_intestinalis
ENSLBEG00000006298	cmss1	52	46.825	ENSCSAVG00000002309	-	99	46.825	Ciona_savignyi
ENSLBEG00000006298	cmss1	88	55.605	ENSCANG00000031337	CMSS1	88	54.167	Colobus_angolensis_palliatus
ENSLBEG00000006298	cmss1	83	57.635	ENSCGRG00001014305	Cmss1	73	57.635	Cricetulus_griseus_chok1gshd
ENSLBEG00000006298	cmss1	83	57.635	ENSCGRG00000006722	Cmss1	79	57.635	Cricetulus_griseus_crigri
ENSLBEG00000006298	cmss1	98	61.887	ENSCSEG00000004958	cmss1	91	62.313	Cynoglossus_semilaevis
ENSLBEG00000006298	cmss1	95	65.637	ENSCVAG00000005039	cmss1	93	65.314	Cyprinodon_variegatus
ENSLBEG00000006298	cmss1	83	65.686	ENSDARG00000112579	cmss1	77	57.551	Danio_rerio
ENSLBEG00000006298	cmss1	83	57.635	ENSDNOG00000040418	CMSS1	73	57.635	Dasypus_novemcinctus
ENSLBEG00000006298	cmss1	82	57.711	ENSDORG00000010461	Cmss1	72	58.128	Dipodomys_ordii
ENSLBEG00000006298	cmss1	55	51.515	ENSEBUG00000002156	-	96	51.515	Eptatretus_burgeri
ENSLBEG00000006298	cmss1	82	56.716	ENSEASG00005010966	CMSS1	92	57.143	Equus_asinus_asinus
ENSLBEG00000006298	cmss1	82	56.219	ENSECAG00000015662	CMSS1	97	51.250	Equus_caballus
ENSLBEG00000006298	cmss1	56	61.628	ENSEEUG00000007624	-	51	61.628	Erinaceus_europaeus
ENSLBEG00000006298	cmss1	83	67.647	ENSELUG00000019459	cmss1	68	67.647	Esox_lucius
ENSLBEG00000006298	cmss1	82	58.706	ENSFCAG00000044577	CMSS1	79	53.333	Felis_catus
ENSLBEG00000006298	cmss1	83	60.591	ENSFALG00000005816	CMSS1	85	60.591	Ficedula_albicollis
ENSLBEG00000006298	cmss1	83	58.621	ENSFDAG00000012577	CMSS1	89	58.621	Fukomys_damarensis
ENSLBEG00000006298	cmss1	83	75.980	ENSFHEG00000012008	cmss1	84	75.980	Fundulus_heteroclitus
ENSLBEG00000006298	cmss1	83	71.569	ENSGMOG00000016729	cmss1	73	71.569	Gadus_morhua
ENSLBEG00000006298	cmss1	98	55.118	ENSGALG00000015267	CMSS1	77	62.069	Gallus_gallus
ENSLBEG00000006298	cmss1	99	67.669	ENSGAFG00000021217	cmss1	77	77.451	Gambusia_affinis
ENSLBEG00000006298	cmss1	83	75.980	ENSGACG00000002798	cmss1	88	70.040	Gasterosteus_aculeatus
ENSLBEG00000006298	cmss1	99	49.071	ENSGAGG00000019861	CMSS1	79	59.113	Gopherus_agassizii
ENSLBEG00000006298	cmss1	83	58.621	ENSGGOG00000014125	CMSS1	85	52.917	Gorilla_gorilla
ENSLBEG00000006298	cmss1	98	66.160	ENSHBUG00000008431	cmss1	72	77.941	Haplochromis_burtoni
ENSLBEG00000006298	cmss1	82	58.209	ENSHGLG00000019481	CMSS1	90	53.333	Heterocephalus_glaber_female
ENSLBEG00000006298	cmss1	82	58.209	ENSHGLG00100010314	CMSS1	89	53.333	Heterocephalus_glaber_male
ENSLBEG00000006298	cmss1	83	76.471	ENSHCOG00000003222	cmss1	92	64.207	Hippocampus_comes
ENSLBEG00000006298	cmss1	93	62.343	ENSIPUG00000011591	cmss1	70	68.627	Ictalurus_punctatus
ENSLBEG00000006298	cmss1	83	56.650	ENSSTOG00000019366	CMSS1	73	56.650	Ictidomys_tridecemlineatus
ENSLBEG00000006298	cmss1	83	57.635	ENSJJAG00000014894	Cmss1	90	57.635	Jaculus_jaculus
ENSLBEG00000006298	cmss1	100	69.262	ENSKMAG00000002390	cmss1	100	69.672	Kryptolebias_marmoratus
ENSLBEG00000006298	cmss1	83	60.591	ENSLACG00000009293	CMSS1	88	60.591	Latimeria_chalumnae
ENSLBEG00000006298	cmss1	83	59.606	ENSLOCG00000009391	cmss1	89	53.360	Lepisosteus_oculatus
ENSLBEG00000006298	cmss1	82	57.711	ENSLAFG00000017509	CMSS1	89	58.128	Loxodonta_africana
ENSLBEG00000006298	cmss1	83	58.621	ENSMFAG00000045006	CMSS1	85	52.917	Macaca_fascicularis
ENSLBEG00000006298	cmss1	83	58.128	ENSMMUG00000002939	CMSS1	94	51.739	Macaca_mulatta
ENSLBEG00000006298	cmss1	83	58.621	ENSMNEG00000031315	CMSS1	85	52.917	Macaca_nemestrina
ENSLBEG00000006298	cmss1	83	59.606	ENSMLEG00000033660	CMSS1	85	53.750	Mandrillus_leucophaeus
ENSLBEG00000006298	cmss1	83	82.843	ENSMAMG00000017176	cmss1	92	70.000	Mastacembelus_armatus
ENSLBEG00000006298	cmss1	92	75.664	ENSMZEG00005021886	cmss1	91	67.910	Maylandia_zebra
ENSLBEG00000006298	cmss1	83	62.069	ENSMGAG00000014360	CMSS1	89	62.069	Meleagris_gallopavo
ENSLBEG00000006298	cmss1	83	45.729	ENSMAUG00000020609	Cmss1	66	45.729	Mesocricetus_auratus
ENSLBEG00000006298	cmss1	82	58.706	ENSMICG00000048977	CMSS1	78	59.113	Microcebus_murinus
ENSLBEG00000006298	cmss1	95	53.942	ENSMOCG00000021937	Cmss1	73	58.621	Microtus_ochrogaster
ENSLBEG00000006298	cmss1	97	70.833	ENSMMOG00000019794	cmss1	99	69.456	Mola_mola
ENSLBEG00000006298	cmss1	99	52.869	ENSMODG00000002275	CMSS1	88	52.869	Monodelphis_domestica
ENSLBEG00000006298	cmss1	98	69.202	ENSMALG00000004250	cmss1	91	68.045	Monopterus_albus
ENSLBEG00000006298	cmss1	83	59.113	MGP_CAROLIEiJ_G0020824	Cmss1	73	59.113	Mus_caroli
ENSLBEG00000006298	cmss1	83	58.128	ENSMUSG00000022748	Cmss1	73	58.128	Mus_musculus
ENSLBEG00000006298	cmss1	83	58.621	MGP_PahariEiJ_G0016524	Cmss1	73	58.621	Mus_pahari
ENSLBEG00000006298	cmss1	83	58.128	MGP_SPRETEiJ_G0021724	Cmss1	73	58.128	Mus_spretus
ENSLBEG00000006298	cmss1	81	58.500	ENSMPUG00000011324	CMSS1	85	53.138	Mustela_putorius_furo
ENSLBEG00000006298	cmss1	82	58.621	ENSMLUG00000001131	CMSS1	85	53.306	Myotis_lucifugus
ENSLBEG00000006298	cmss1	83	57.635	ENSNGAG00000020316	Cmss1	72	57.635	Nannospalax_galili
ENSLBEG00000006298	cmss1	92	75.221	ENSNBRG00000003095	cmss1	91	67.537	Neolamprologus_brichardi
ENSLBEG00000006298	cmss1	82	58.706	ENSNLEG00000034172	CMSS1	85	53.333	Nomascus_leucogenys
ENSLBEG00000006298	cmss1	83	47.783	ENSMEUG00000014505	CMSS1	89	47.783	Notamacropus_eugenii
ENSLBEG00000006298	cmss1	83	59.606	ENSOPRG00000002986	CMSS1	73	59.606	Ochotona_princeps
ENSLBEG00000006298	cmss1	83	51.471	ENSODEG00000001853	-	71	50.990	Octodon_degus
ENSLBEG00000006298	cmss1	98	47.280	ENSODEG00000009446	-	78	51.232	Octodon_degus
ENSLBEG00000006298	cmss1	83	57.635	ENSODEG00000003558	-	82	52.083	Octodon_degus
ENSLBEG00000006298	cmss1	82	58.706	ENSODEG00000005226	-	72	59.113	Octodon_degus
ENSLBEG00000006298	cmss1	98	65.909	ENSONIG00000006678	cmss1	78	77.451	Oreochromis_niloticus
ENSLBEG00000006298	cmss1	90	57.727	ENSOANG00000007529	CMSS1	87	59.606	Ornithorhynchus_anatinus
ENSLBEG00000006298	cmss1	83	59.606	ENSOCUG00000025366	CMSS1	80	53.750	Oryctolagus_cuniculus
ENSLBEG00000006298	cmss1	100	68.675	ENSORLG00000020340	cmss1	87	69.076	Oryzias_latipes
ENSLBEG00000006298	cmss1	94	62.609	ENSORLG00020012235	cmss1	99	61.224	Oryzias_latipes_hni
ENSLBEG00000006298	cmss1	99	56.929	ENSORLG00015015551	cmss1	76	66.667	Oryzias_latipes_hsok
ENSLBEG00000006298	cmss1	98	65.000	ENSOMEG00000012555	cmss1	70	76.961	Oryzias_melastigma
ENSLBEG00000006298	cmss1	83	58.621	ENSOGAG00000002045	CMSS1	89	58.621	Otolemur_garnettii
ENSLBEG00000006298	cmss1	83	57.353	ENSOARG00000017899	CMSS1	76	52.282	Ovis_aries
ENSLBEG00000006298	cmss1	83	58.621	ENSPPAG00000038515	CMSS1	81	52.917	Pan_paniscus
ENSLBEG00000006298	cmss1	82	58.706	ENSPPRG00000016767	CMSS1	79	53.333	Panthera_pardus
ENSLBEG00000006298	cmss1	82	58.209	ENSPTIG00000018274	CMSS1	79	52.917	Panthera_tigris_altaica
ENSLBEG00000006298	cmss1	83	58.621	ENSPTRG00000015157	CMSS1	90	52.917	Pan_troglodytes
ENSLBEG00000006298	cmss1	83	59.113	ENSPANG00000019980	CMSS1	88	53.333	Papio_anubis
ENSLBEG00000006298	cmss1	100	59.398	ENSPKIG00000012609	cmss1	98	59.398	Paramormyrops_kingsleyae
ENSLBEG00000006298	cmss1	83	61.084	ENSPSIG00000003849	CMSS1	88	61.084	Pelodiscus_sinensis
ENSLBEG00000006298	cmss1	83	76.098	ENSPMGG00000010286	cmss1	88	76.098	Periophthalmus_magnuspinnatus
ENSLBEG00000006298	cmss1	98	52.016	ENSPEMG00000016384	Cmss1	72	58.128	Peromyscus_maniculatus_bairdii
ENSLBEG00000006298	cmss1	83	46.829	ENSPMAG00000001146	cmss1	99	47.059	Petromyzon_marinus
ENSLBEG00000006298	cmss1	97	53.086	ENSPCIG00000015656	CMSS1	77	58.128	Phascolarctos_cinereus
ENSLBEG00000006298	cmss1	83	76.961	ENSPFOG00000016849	cmss1	71	76.961	Poecilia_formosa
ENSLBEG00000006298	cmss1	83	76.471	ENSPLAG00000008323	cmss1	71	76.471	Poecilia_latipinna
ENSLBEG00000006298	cmss1	83	76.471	ENSPMEG00000021020	cmss1	70	76.471	Poecilia_mexicana
ENSLBEG00000006298	cmss1	98	66.038	ENSPREG00000007618	cmss1	69	75.980	Poecilia_reticulata
ENSLBEG00000006298	cmss1	83	59.113	ENSPPYG00000013606	CMSS1	81	53.333	Pongo_abelii
ENSLBEG00000006298	cmss1	82	58.209	ENSPCOG00000020035	CMSS1	85	52.917	Propithecus_coquereli
ENSLBEG00000006298	cmss1	82	48.259	ENSPVAG00000017031	CMSS1	72	48.768	Pteropus_vampyrus
ENSLBEG00000006298	cmss1	81	76.000	ENSPNYG00000013428	cmss1	86	68.201	Pundamilia_nyererei
ENSLBEG00000006298	cmss1	83	66.176	ENSPNAG00000007912	cmss1	76	60.082	Pygocentrus_nattereri
ENSLBEG00000006298	cmss1	83	58.128	ENSRNOG00000027888	Cmss1	79	58.128	Rattus_norvegicus
ENSLBEG00000006298	cmss1	83	58.621	ENSRBIG00000037931	CMSS1	85	52.917	Rhinopithecus_bieti
ENSLBEG00000006298	cmss1	83	58.621	ENSRROG00000042910	CMSS1	85	52.917	Rhinopithecus_roxellana
ENSLBEG00000006298	cmss1	83	58.621	ENSSBOG00000030980	CMSS1	84	53.333	Saimiri_boliviensis_boliviensis
ENSLBEG00000006298	cmss1	83	58.128	ENSSHAG00000009321	CMSS1	91	52.917	Sarcophilus_harrisii
ENSLBEG00000006298	cmss1	83	71.569	ENSSFOG00015001509	cmss1	93	59.779	Scleropages_formosus
ENSLBEG00000006298	cmss1	96	71.538	ENSSMAG00000001653	cmss1	91	71.375	Scophthalmus_maximus
ENSLBEG00000006298	cmss1	98	71.863	ENSSDUG00000007719	cmss1	92	71.805	Seriola_dumerili
ENSLBEG00000006298	cmss1	85	83.654	ENSSLDG00000012300	cmss1	92	67.883	Seriola_lalandi_dorsalis
ENSLBEG00000006298	cmss1	83	48.276	ENSSARG00000003584	CMSS1	72	48.276	Sorex_araneus
ENSLBEG00000006298	cmss1	83	57.143	ENSSPUG00000003865	CMSS1	98	50.622	Sphenodon_punctatus
ENSLBEG00000006298	cmss1	99	74.806	ENSSPAG00000019182	cmss1	79	75.097	Stegastes_partitus
ENSLBEG00000006298	cmss1	82	57.214	ENSSSCG00000011970	CMSS1	79	52.083	Sus_scrofa
ENSLBEG00000006298	cmss1	83	60.099	ENSTGUG00000013635	CMSS1	88	60.099	Taeniopygia_guttata
ENSLBEG00000006298	cmss1	99	64.286	ENSTRUG00000015265	cmss1	72	75.980	Takifugu_rubripes
ENSLBEG00000006298	cmss1	83	69.118	ENSTNIG00000002880	cmss1	74	69.118	Tetraodon_nigroviridis
ENSLBEG00000006298	cmss1	60	65.000	ENSTBEG00000016722	CMSS1	52	65.000	Tupaia_belangeri
ENSLBEG00000006298	cmss1	83	56.716	ENSTTRG00000001562	CMSS1	79	51.681	Tursiops_truncatus
ENSLBEG00000006298	cmss1	83	58.621	ENSUAMG00000024209	CMSS1	91	58.621	Ursus_americanus
ENSLBEG00000006298	cmss1	83	58.621	ENSUMAG00000001983	CMSS1	78	58.621	Ursus_maritimus
ENSLBEG00000006298	cmss1	64	57.419	ENSVPAG00000000263	CMSS1	55	57.419	Vicugna_pacos
ENSLBEG00000006298	cmss1	82	59.204	ENSVVUG00000021647	-	82	59.606	Vulpes_vulpes
ENSLBEG00000006298	cmss1	83	58.621	ENSVVUG00000007776	-	80	58.621	Vulpes_vulpes
ENSLBEG00000006298	cmss1	83	53.431	ENSXETG00000011858	cmss1	73	53.431	Xenopus_tropicalis
ENSLBEG00000006298	cmss1	99	66.667	ENSXCOG00000018724	cmss1	70	76.961	Xiphophorus_couchianus
ENSLBEG00000006298	cmss1	99	66.667	ENSXMAG00000011243	cmss1	76	76.961	Xiphophorus_maculatus