EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000006542 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 20028 bases
Position: chrFKLU01000090.1:883695-903722
Accession: 109986035
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000008690	KH_1	PF00013.29	2.1e-41	1	2
ENSLBEP00000008690	KH_1	PF00013.29	2.1e-41	2	2
ENSLBEP00000008710	KH_1	PF00013.29	2.3e-41	1	2
ENSLBEP00000008710	KH_1	PF00013.29	2.3e-41	2	2
ENSLBEP00000008690	KH_2	PF07650.17	2.6e-10	1	1
ENSLBEP00000008710	KH_2	PF07650.17	3.1e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000009143	-	894	-	ENSLBEP00000008690	297 (aa)	-	-
ENSLBET00000009171	-	912	XM_020636549	ENSLBEP00000008710	303 (aa)	XP_020492205	-

Gene Model

Click here to download ENSLBEG00000006542's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000006542's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000006542	-	99	80.000	ENSLBEG00000006201	pcbp3	98	80.000
ENSLBEG00000006542	-	96	65.461	ENSLBEG00000010080	pcbp2	97	65.461
ENSLBEG00000006542	-	98	60.896	ENSLBEG00000023074	zgc:110045	98	60.896
ENSLBEG00000006542	-	74	33.663	ENSLBEG00000003710	IGF2BP2	52	32.692
ENSLBEG00000006542	-	94	55.352	ENSLBEG00000011345	-	72	53.651
ENSLBEG00000006542	-	96	66.667	ENSLBEG00000015211	PCBP2	97	66.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000006542	-	99	80.000	ENSAPOG00000020003	pcbp3	89	80.000	Acanthochromis_polyacanthus
ENSLBEG00000006542	-	100	84.259	ENSAPOG00000016582	-	100	84.259	Acanthochromis_polyacanthus
ENSLBEG00000006542	-	98	76.036	ENSAMEG00000001697	-	99	74.352	Ailuropoda_melanoleuca
ENSLBEG00000006542	-	100	84.098	ENSACIG00000002739	-	100	84.308	Amphilophus_citrinellus
ENSLBEG00000006542	-	100	80.814	ENSACIG00000010933	pcbp3	100	80.523	Amphilophus_citrinellus
ENSLBEG00000006542	-	86	87.218	ENSAOCG00000007806	-	89	87.218	Amphiprion_ocellaris
ENSLBEG00000006542	-	96	80.635	ENSAOCG00000008592	-	98	80.635	Amphiprion_ocellaris
ENSLBEG00000006542	-	100	79.545	ENSAPEG00000008011	pcbp3	100	77.273	Amphiprion_percula
ENSLBEG00000006542	-	100	83.951	ENSAPEG00000005209	-	100	83.951	Amphiprion_percula
ENSLBEG00000006542	-	100	84.520	ENSATEG00000009833	-	100	84.520	Anabas_testudineus
ENSLBEG00000006542	-	96	79.697	ENSATEG00000015787	-	100	77.273	Anabas_testudineus
ENSLBEG00000006542	-	98	77.177	ENSAPLG00000002975	-	98	77.177	Anas_platyrhynchos
ENSLBEG00000006542	-	99	72.059	ENSACAG00000009819	-	99	70.882	Anolis_carolinensis
ENSLBEG00000006542	-	98	74.790	ENSACAG00000004607	-	99	73.389	Anolis_carolinensis
ENSLBEG00000006542	-	82	88.889	ENSANAG00000030702	-	100	88.889	Aotus_nancymaae
ENSLBEG00000006542	-	100	83.282	ENSACLG00000003801	-	100	83.282	Astatotilapia_calliptera
ENSLBEG00000006542	-	100	78.693	ENSACLG00000011835	pcbp3	100	76.420	Astatotilapia_calliptera
ENSLBEG00000006542	-	100	80.857	ENSAMXG00000003440	pcbp3	100	78.857	Astyanax_mexicanus
ENSLBEG00000006542	-	94	63.240	ENSAMXG00000001760	zgc:110045	73	62.733	Astyanax_mexicanus
ENSLBEG00000006542	-	96	79.487	ENSAMXG00000013588	-	100	79.487	Astyanax_mexicanus
ENSLBEG00000006542	-	90	74.359	ENSCAFG00020019472	-	81	74.359	Canis_lupus_dingo
ENSLBEG00000006542	-	98	80.878	ENSCSAG00000007440	-	89	80.878	Chlorocebus_sabaeus
ENSLBEG00000006542	-	99	68.986	ENSCPBG00000000733	-	76	67.826	Chrysemys_picta_bellii
ENSLBEG00000006542	-	98	76.923	ENSCPBG00000012151	-	99	76.106	Chrysemys_picta_bellii
ENSLBEG00000006542	-	100	70.058	ENSCSEG00000016984	-	100	69.477	Cynoglossus_semilaevis
ENSLBEG00000006542	-	96	79.808	ENSCSEG00000000822	pcbp3	99	79.808	Cynoglossus_semilaevis
ENSLBEG00000006542	-	100	83.025	ENSCVAG00000005262	-	100	83.025	Cyprinodon_variegatus
ENSLBEG00000006542	-	100	79.487	ENSCVAG00000014482	pcbp3	100	78.917	Cyprinodon_variegatus
ENSLBEG00000006542	-	100	81.143	ENSDARG00000054378	pcbp3	100	79.651	Danio_rerio
ENSLBEG00000006542	-	98	77.429	ENSETEG00000015988	-	98	77.429	Echinops_telfairi
ENSLBEG00000006542	-	86	67.969	ENSEBUG00000016192	pcbp3	89	67.347	Eptatretus_burgeri
ENSLBEG00000006542	-	97	66.061	ENSEBUG00000007485	-	86	67.081	Eptatretus_burgeri
ENSLBEG00000006542	-	91	54.183	ENSEBUG00000005495	pcbp3	74	53.785	Eptatretus_burgeri
ENSLBEG00000006542	-	100	79.603	ENSELUG00000003521	pcbp3	100	77.337	Esox_lucius
ENSLBEG00000006542	-	100	82.530	ENSELUG00000001560	-	91	82.530	Esox_lucius
ENSLBEG00000006542	-	98	79.937	ENSFALG00000003949	-	98	79.937	Ficedula_albicollis
ENSLBEG00000006542	-	97	80.952	ENSFHEG00000016615	pcbp3	96	80.952	Fundulus_heteroclitus
ENSLBEG00000006542	-	100	83.333	ENSFHEG00000006539	-	100	83.333	Fundulus_heteroclitus
ENSLBEG00000006542	-	96	64.671	ENSGMOG00000008611	-	100	64.671	Gadus_morhua
ENSLBEG00000006542	-	97	66.176	ENSGMOG00000011992	pcbp3	97	66.176	Gadus_morhua
ENSLBEG00000006542	-	97	71.212	ENSGALG00000013155	-	99	70.000	Gallus_gallus
ENSLBEG00000006542	-	98	75.424	ENSGALG00000004394	-	99	74.011	Gallus_gallus
ENSLBEG00000006542	-	100	82.831	ENSGAFG00000010274	-	100	82.831	Gambusia_affinis
ENSLBEG00000006542	-	100	76.540	ENSGAFG00000011430	pcbp3	99	74.194	Gambusia_affinis
ENSLBEG00000006542	-	100	77.233	ENSGACG00000002266	-	100	77.233	Gasterosteus_aculeatus
ENSLBEG00000006542	-	100	68.320	ENSGACG00000014955	-	100	67.493	Gasterosteus_aculeatus
ENSLBEG00000006542	-	78	72.139	ENSGAGG00000006956	-	76	75.543	Gopherus_agassizii
ENSLBEG00000006542	-	81	79.435	ENSGAGG00000000271	-	88	81.250	Gopherus_agassizii
ENSLBEG00000006542	-	100	78.917	ENSHBUG00000010697	pcbp3	100	78.348	Haplochromis_burtoni
ENSLBEG00000006542	-	100	83.282	ENSHBUG00000021782	-	100	83.282	Haplochromis_burtoni
ENSLBEG00000006542	-	100	79.714	ENSHCOG00000017868	pcbp3	100	79.143	Hippocampus_comes
ENSLBEG00000006542	-	100	81.595	ENSHCOG00000006067	-	100	80.982	Hippocampus_comes
ENSLBEG00000006542	-	100	82.663	ENSIPUG00000006238	pcbp3	100	82.663	Ictalurus_punctatus
ENSLBEG00000006542	-	100	83.436	ENSKMAG00000018530	-	100	84.969	Kryptolebias_marmoratus
ENSLBEG00000006542	-	100	79.545	ENSKMAG00000003046	pcbp3	100	77.273	Kryptolebias_marmoratus
ENSLBEG00000006542	-	94	71.714	ENSLACG00000010386	pcbp3	77	64.033	Latimeria_chalumnae
ENSLBEG00000006542	-	99	65.217	ENSLACG00000010804	zgc:110045	77	60.705	Latimeria_chalumnae
ENSLBEG00000006542	-	94	70.859	ENSLOCG00000005058	zgc:110045	80	70.552	Lepisosteus_oculatus
ENSLBEG00000006542	-	98	79.525	ENSLOCG00000009369	pcbp3	99	78.338	Lepisosteus_oculatus
ENSLBEG00000006542	-	100	83.282	ENSMAMG00000011620	-	100	83.282	Mastacembelus_armatus
ENSLBEG00000006542	-	97	80.635	ENSMAMG00000022336	pcbp3	93	81.090	Mastacembelus_armatus
ENSLBEG00000006542	-	100	86.866	ENSMZEG00005014882	-	100	86.866	Maylandia_zebra
ENSLBEG00000006542	-	100	79.429	ENSMZEG00005008993	pcbp3	100	77.143	Maylandia_zebra
ENSLBEG00000006542	-	94	67.826	ENSMGAG00000001883	-	96	67.147	Meleagris_gallopavo
ENSLBEG00000006542	-	100	82.972	ENSMMOG00000005216	-	100	82.972	Mola_mola
ENSLBEG00000006542	-	96	79.180	ENSMMOG00000000730	pcbp3	88	79.180	Mola_mola
ENSLBEG00000006542	-	87	75.701	ENSMODG00000027884	-	93	71.963	Monodelphis_domestica
ENSLBEG00000006542	-	100	80.172	ENSMALG00000000691	pcbp3	100	77.874	Monopterus_albus
ENSLBEG00000006542	-	98	73.353	ENSMPUG00000001779	-	90	73.353	Mustela_putorius_furo
ENSLBEG00000006542	-	100	80.058	ENSNBRG00000016409	-	100	79.480	Neolamprologus_brichardi
ENSLBEG00000006542	-	100	86.866	ENSNBRG00000016714	-	100	86.866	Neolamprologus_brichardi
ENSLBEG00000006542	-	95	74.203	ENSOPRG00000003431	-	99	72.754	Ochotona_princeps
ENSLBEG00000006542	-	96	74.148	ENSONIG00000012122	-	98	73.580	Oreochromis_niloticus
ENSLBEG00000006542	-	100	82.515	ENSONIG00000004611	-	100	82.515	Oreochromis_niloticus
ENSLBEG00000006542	-	98	79.937	ENSOCUG00000002696	-	89	79.937	Oryctolagus_cuniculus
ENSLBEG00000006542	-	96	80.635	ENSORLG00000000059	pcbp3	100	80.635	Oryzias_latipes
ENSLBEG00000006542	-	100	82.515	ENSORLG00000022739	-	100	82.515	Oryzias_latipes
ENSLBEG00000006542	-	99	79.630	ENSORLG00020012671	pcbp3	97	80.635	Oryzias_latipes_hni
ENSLBEG00000006542	-	100	83.282	ENSORLG00020006124	-	100	83.282	Oryzias_latipes_hni
ENSLBEG00000006542	-	99	79.630	ENSORLG00015000429	pcbp3	97	80.635	Oryzias_latipes_hsok
ENSLBEG00000006542	-	99	82.175	ENSORLG00015008051	-	99	82.175	Oryzias_latipes_hsok
ENSLBEG00000006542	-	89	80.756	ENSOMEG00000020811	pcbp3	98	80.756	Oryzias_melastigma
ENSLBEG00000006542	-	100	82.663	ENSOMEG00000020162	-	100	82.663	Oryzias_melastigma
ENSLBEG00000006542	-	98	71.866	ENSOGAG00000008044	-	99	70.752	Otolemur_garnettii
ENSLBEG00000006542	-	100	82.663	ENSPKIG00000019329	pcbp3	100	82.663	Paramormyrops_kingsleyae
ENSLBEG00000006542	-	74	73.370	ENSPKIG00000020913	-	80	73.370	Paramormyrops_kingsleyae
ENSLBEG00000006542	-	77	77.959	ENSPSIG00000008350	-	72	73.462	Pelodiscus_sinensis
ENSLBEG00000006542	-	98	68.155	ENSPSIG00000014970	-	98	68.750	Pelodiscus_sinensis
ENSLBEG00000006542	-	100	79.429	ENSPMGG00000022383	pcbp3	100	78.000	Periophthalmus_magnuspinnatus
ENSLBEG00000006542	-	74	71.277	ENSPMAG00000004637	-	97	71.277	Petromyzon_marinus
ENSLBEG00000006542	-	97	59.215	ENSPMAG00000004551	pcbp3	91	60.062	Petromyzon_marinus
ENSLBEG00000006542	-	98	78.932	ENSPCIG00000028092	-	99	77.448	Phascolarctos_cinereus
ENSLBEG00000006542	-	100	72.346	ENSPLAG00000011449	pcbp3	100	68.782	Poecilia_latipinna
ENSLBEG00000006542	-	99	79.518	ENSPLAG00000004074	-	92	79.518	Poecilia_latipinna
ENSLBEG00000006542	-	100	82.891	ENSPMEG00000006653	-	99	83.284	Poecilia_mexicana
ENSLBEG00000006542	-	100	78.814	ENSPMEG00000021239	pcbp3	100	76.554	Poecilia_mexicana
ENSLBEG00000006542	-	100	82.972	ENSPREG00000020585	-	100	82.972	Poecilia_reticulata
ENSLBEG00000006542	-	96	79.487	ENSPREG00000015736	pcbp3	99	79.487	Poecilia_reticulata
ENSLBEG00000006542	-	100	83.282	ENSPNYG00000013205	-	100	83.282	Pundamilia_nyererei
ENSLBEG00000006542	-	96	80.635	ENSPNYG00000012326	pcbp3	95	80.635	Pundamilia_nyererei
ENSLBEG00000006542	-	100	78.286	ENSPNAG00000008541	-	98	80.000	Pygocentrus_nattereri
ENSLBEG00000006542	-	100	82.515	ENSPNAG00000015104	pcbp3	100	82.515	Pygocentrus_nattereri
ENSLBEG00000006542	-	98	80.564	ENSRNOG00000001245	Pcbp3	98	80.564	Rattus_norvegicus
ENSLBEG00000006542	-	98	71.779	ENSRBIG00000028177	-	99	65.289	Rhinopithecus_bieti
ENSLBEG00000006542	-	98	75.516	ENSSHAG00000007890	-	99	75.516	Sarcophilus_harrisii
ENSLBEG00000006542	-	100	79.154	ENSSFOG00015014706	pcbp3	100	78.248	Scleropages_formosus
ENSLBEG00000006542	-	100	82.530	ENSSFOG00015010205	pcbp3	100	82.530	Scleropages_formosus
ENSLBEG00000006542	-	97	71.692	ENSSFOG00015007118	-	93	74.183	Scleropages_formosus
ENSLBEG00000006542	-	100	83.591	ENSSMAG00000003135	-	100	83.591	Scophthalmus_maximus
ENSLBEG00000006542	-	96	81.410	ENSSMAG00000011929	pcbp3	97	81.410	Scophthalmus_maximus
ENSLBEG00000006542	-	96	79.154	ENSSDUG00000011608	pcbp3	99	78.550	Seriola_dumerili
ENSLBEG00000006542	-	100	86.018	ENSSDUG00000008502	-	100	86.018	Seriola_dumerili
ENSLBEG00000006542	-	100	83.434	ENSSLDG00000020161	-	100	83.434	Seriola_lalandi_dorsalis
ENSLBEG00000006542	-	96	79.154	ENSSLDG00000008518	pcbp3	99	78.550	Seriola_lalandi_dorsalis
ENSLBEG00000006542	-	97	65.278	ENSSPUG00000013214	-	83	76.538	Sphenodon_punctatus
ENSLBEG00000006542	-	86	87.594	ENSSPAG00000004190	-	89	87.594	Stegastes_partitus
ENSLBEG00000006542	-	100	70.349	ENSSPAG00000023341	-	100	70.058	Stegastes_partitus
ENSLBEG00000006542	-	98	73.981	ENSTGUG00000008158	-	99	73.981	Taeniopygia_guttata
ENSLBEG00000006542	-	98	73.156	ENSTGUG00000003316	-	99	73.156	Taeniopygia_guttata
ENSLBEG00000006542	-	99	78.125	ENSTRUG00000006280	-	99	78.125	Takifugu_rubripes
ENSLBEG00000006542	-	100	81.121	ENSTRUG00000013604	pcbp3	100	81.121	Takifugu_rubripes
ENSLBEG00000006542	-	98	73.596	ENSTTRG00000015075	-	99	72.191	Tursiops_truncatus
ENSLBEG00000006542	-	98	74.336	ENSXETG00000011483	pcbp1	99	74.336	Xenopus_tropicalis
ENSLBEG00000006542	-	93	63.173	ENSXETG00000010491	pcbp2	74	60.767	Xenopus_tropicalis
ENSLBEG00000006542	-	100	78.814	ENSXCOG00000020481	pcbp3	100	76.554	Xiphophorus_couchianus
ENSLBEG00000006542	-	100	79.545	ENSXMAG00000008175	pcbp3	100	77.273	Xiphophorus_maculatus
ENSLBEG00000006542	-	100	83.133	ENSXMAG00000028711	-	100	83.133	Xiphophorus_maculatus