EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000006603 (Gene tree)
Gene ID: 109995941
Gene Symbol: gfi1aa
Alias: gfi1.1|gfi1a|zgc:113277
Full Name: zinc finger protein Gfi-1-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 2199 bases
Position: chrFKLU01000011.1:1421889-1424087
Accession: 109995941
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000008546	zf-C2H2	PF00096.26	7.9e-28	1	6
ENSLBEP00000008546	zf-C2H2	PF00096.26	7.9e-28	2	6
ENSLBEP00000008546	zf-C2H2	PF00096.26	7.9e-28	3	6
ENSLBEP00000008546	zf-C2H2	PF00096.26	7.9e-28	4	6
ENSLBEP00000008546	zf-C2H2	PF00096.26	7.9e-28	5	6
ENSLBEP00000008546	zf-C2H2	PF00096.26	7.9e-28	6	6
ENSLBEP00000008546	zf-met	PF12874.7	1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000008982	-	1265	XM_020649853	ENSLBEP00000008546	395 (aa)	XP_020505509	UPI0009B304A0

Gene Model

Click here to download ENSLBEG00000006603's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000006603's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000006603	gfi1aa	51	41.212	ENSLBEG00000001920	-	92	42.537
ENSLBEG00000006603	gfi1aa	52	49.180	ENSLBEG00000008909	-	91	49.180
ENSLBEG00000006603	gfi1aa	52	46.154	ENSLBEG00000009580	-	70	46.154
ENSLBEG00000006603	gfi1aa	54	45.161	ENSLBEG00000005307	znf236	61	45.161
ENSLBEG00000006603	gfi1aa	68	44.118	ENSLBEG00000024509	-	99	44.118
ENSLBEG00000006603	gfi1aa	63	40.828	ENSLBEG00000008115	-	90	41.096
ENSLBEG00000006603	gfi1aa	62	45.395	ENSLBEG00000013570	-	99	44.643
ENSLBEG00000006603	gfi1aa	100	61.713	ENSLBEG00000027776	gfi1ab	100	61.209
ENSLBEG00000006603	gfi1aa	59	44.138	ENSLBEG00000011040	-	56	44.138
ENSLBEG00000006603	gfi1aa	54	42.657	ENSLBEG00000010278	-	95	41.844
ENSLBEG00000006603	gfi1aa	50	32.778	ENSLBEG00000014195	-	51	33.889
ENSLBEG00000006603	gfi1aa	53	41.104	ENSLBEG00000018509	-	99	41.104
ENSLBEG00000006603	gfi1aa	60	40.845	ENSLBEG00000015694	-	95	40.845

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000006603	gfi1aa	100	82.836	ENSAPOG00000005043	gfi1aa	100	82.836	Acanthochromis_polyacanthus
ENSLBEG00000006603	gfi1aa	100	78.894	ENSACIG00000021378	gfi1aa	100	78.894	Amphilophus_citrinellus
ENSLBEG00000006603	gfi1aa	100	82.836	ENSAOCG00000022957	gfi1aa	100	82.836	Amphiprion_ocellaris
ENSLBEG00000006603	gfi1aa	100	82.587	ENSAPEG00000014539	gfi1aa	100	82.587	Amphiprion_percula
ENSLBEG00000006603	gfi1aa	100	79.353	ENSATEG00000019026	gfi1aa	99	84.099	Anabas_testudineus
ENSLBEG00000006603	gfi1aa	100	79.302	ENSACLG00000008641	gfi1aa	100	79.302	Astatotilapia_calliptera
ENSLBEG00000006603	gfi1aa	100	62.814	ENSDARG00000020746	gfi1aa	100	62.657	Danio_rerio
ENSLBEG00000006603	gfi1aa	100	77.889	ENSHBUG00000007389	gfi1aa	100	77.889	Haplochromis_burtoni
ENSLBEG00000006603	gfi1aa	100	74.177	ENSKMAG00000002148	gfi1aa	100	74.177	Kryptolebias_marmoratus
ENSLBEG00000006603	gfi1aa	100	75.500	ENSMAMG00000004896	gfi1aa	100	76.750	Mastacembelus_armatus
ENSLBEG00000006603	gfi1aa	100	79.302	ENSMZEG00005004578	gfi1aa	100	79.302	Maylandia_zebra
ENSLBEG00000006603	gfi1aa	84	78.716	ENSMMOG00000006167	gfi1aa	100	64.662	Mola_mola
ENSLBEG00000006603	gfi1aa	100	79.052	ENSNBRG00000002673	gfi1aa	100	79.052	Neolamprologus_brichardi
ENSLBEG00000006603	gfi1aa	100	78.000	ENSPNYG00000002189	gfi1aa	100	78.000	Pundamilia_nyererei
ENSLBEG00000006603	gfi1aa	100	78.218	ENSSMAG00000006797	gfi1aa	100	78.960	Scophthalmus_maximus
ENSLBEG00000006603	gfi1aa	100	82.090	ENSSDUG00000011654	gfi1aa	100	82.090	Seriola_dumerili
ENSLBEG00000006603	gfi1aa	100	80.952	ENSSLDG00000016512	gfi1aa	100	81.203	Seriola_lalandi_dorsalis
ENSLBEG00000006603	gfi1aa	85	78.779	ENSSPAG00000000927	gfi1aa	94	78.779	Stegastes_partitus
ENSLBEG00000006603	gfi1aa	100	76.923	ENSTRUG00000004744	gfi1aa	100	76.923	Takifugu_rubripes