EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000006759 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 13348 bases
Position: chrFKLU01000011.1:1449341-1462688
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000008890	ResIII	PF04851.15	5.3e-11	1	1
ENSLBEP00000008960	ResIII	PF04851.15	2.6e-09	1	1
ENSLBEP00000008890	DEAD	PF00270.29	1.7e-27	1	1
ENSLBEP00000008960	DEAD	PF00270.29	4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000009373	-	3222	-	ENSLBEP00000008890	1073 (aa)	-	-
ENSLBET00000009447	-	2487	-	ENSLBEP00000008960	829 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000006759's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000006759's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000006759	hfm1	79	31.715	ENSLBEG00000009623	ascc3	71	32.394
ENSLBEG00000006759	hfm1	85	31.533	ENSLBEG00000021585	snrnp200	65	31.533

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000006759	hfm1	98	65.299	ENSG00000162669	HFM1	70	60.707	Homo_sapiens
ENSLBEG00000006759	hfm1	99	84.131	ENSAPOG00000005304	hfm1	100	84.131	Acanthochromis_polyacanthus
ENSLBEG00000006759	hfm1	96	65.591	ENSAMEG00000000432	HFM1	73	59.117	Ailuropoda_melanoleuca
ENSLBEG00000006759	hfm1	94	82.822	ENSACIG00000021553	hfm1	95	75.435	Amphilophus_citrinellus
ENSLBEG00000006759	hfm1	99	84.732	ENSAOCG00000022839	hfm1	100	84.732	Amphiprion_ocellaris
ENSLBEG00000006759	hfm1	99	85.263	ENSAPEG00000014316	hfm1	100	85.263	Amphiprion_percula
ENSLBEG00000006759	hfm1	95	85.783	ENSATEG00000019181	hfm1	86	81.623	Anabas_testudineus
ENSLBEG00000006759	hfm1	96	65.238	ENSAPLG00000013639	HFM1	71	60.176	Anas_platyrhynchos
ENSLBEG00000006759	hfm1	98	64.202	ENSANAG00000029513	HFM1	70	61.061	Aotus_nancymaae
ENSLBEG00000006759	hfm1	99	84.848	ENSACLG00000009033	hfm1	100	84.848	Astatotilapia_calliptera
ENSLBEG00000006759	hfm1	96	74.729	ENSAMXG00000006108	hfm1	72	66.094	Astyanax_mexicanus
ENSLBEG00000006759	hfm1	96	65.990	ENSBTAG00000020856	HFM1	71	60.488	Bos_taurus
ENSLBEG00000006759	hfm1	98	64.865	ENSCJAG00000001843	HFM1	71	60.314	Callithrix_jacchus
ENSLBEG00000006759	hfm1	96	65.550	ENSCAFG00000020187	HFM1	73	59.001	Canis_familiaris
ENSLBEG00000006759	hfm1	96	65.595	ENSTSYG00000014250	HFM1	71	60.176	Carlito_syrichta
ENSLBEG00000006759	hfm1	97	64.405	ENSCPOG00000007421	HFM1	73	59.238	Cavia_porcellus
ENSLBEG00000006759	hfm1	98	64.512	ENSCCAG00000033206	HFM1	71	60.079	Cebus_capucinus
ENSLBEG00000006759	hfm1	96	65.673	ENSCATG00000030987	HFM1	70	60.609	Cercocebus_atys
ENSLBEG00000006759	hfm1	98	64.558	ENSCLAG00000005173	HFM1	64	61.273	Chinchilla_lanigera
ENSLBEG00000006759	hfm1	79	50.070	ENSCSAVG00000005094	-	100	51.811	Ciona_savignyi
ENSLBEG00000006759	hfm1	92	61.644	ENSCGRG00001016995	Hfm1	70	55.744	Cricetulus_griseus_chok1gshd
ENSLBEG00000006759	hfm1	96	63.409	ENSCGRG00000017181	Hfm1	71	57.900	Cricetulus_griseus_crigri
ENSLBEG00000006759	hfm1	97	78.679	ENSCSEG00000017659	hfm1	99	72.274	Cynoglossus_semilaevis
ENSLBEG00000006759	hfm1	81	78.451	ENSCVAG00000005075	hfm1	86	82.486	Cyprinodon_variegatus
ENSLBEG00000006759	hfm1	97	73.881	ENSDARG00000104288	hfm1	76	73.881	Danio_rerio
ENSLBEG00000006759	hfm1	96	64.601	ENSDNOG00000004776	HFM1	62	62.971	Dasypus_novemcinctus
ENSLBEG00000006759	hfm1	96	63.115	ENSDORG00000014661	Hfm1	71	58.229	Dipodomys_ordii
ENSLBEG00000006759	hfm1	51	61.468	ENSEBUG00000006133	-	89	63.679	Eptatretus_burgeri
ENSLBEG00000006759	hfm1	92	65.918	ENSEASG00005015424	HFM1	96	61.128	Equus_asinus_asinus
ENSLBEG00000006759	hfm1	97	65.521	ENSECAG00000024039	HFM1	63	62.955	Equus_caballus
ENSLBEG00000006759	hfm1	99	76.251	ENSELUG00000018944	hfm1	98	76.251	Esox_lucius
ENSLBEG00000006759	hfm1	96	65.711	ENSFCAG00000029116	HFM1	71	60.059	Felis_catus
ENSLBEG00000006759	hfm1	96	65.673	ENSFALG00000001781	HFM1	71	59.042	Ficedula_albicollis
ENSLBEG00000006759	hfm1	97	65.595	ENSFDAG00000020816	HFM1	66	60.826	Fukomys_damarensis
ENSLBEG00000006759	hfm1	95	73.966	ENSGMOG00000017436	hfm1	99	68.998	Gadus_morhua
ENSLBEG00000006759	hfm1	98	78.356	ENSGAFG00000018093	hfm1	100	78.356	Gambusia_affinis
ENSLBEG00000006759	hfm1	95	80.657	ENSGACG00000015686	hfm1	97	76.571	Gasterosteus_aculeatus
ENSLBEG00000006759	hfm1	98	65.182	ENSGGOG00000038524	HFM1	70	60.609	Gorilla_gorilla
ENSLBEG00000006759	hfm1	95	81.084	ENSHBUG00000007309	hfm1	98	75.411	Haplochromis_burtoni
ENSLBEG00000006759	hfm1	98	82.339	ENSHCOG00000019632	hfm1	100	82.339	Hippocampus_comes
ENSLBEG00000006759	hfm1	99	71.968	ENSIPUG00000017020	hfm1	99	71.968	Ictalurus_punctatus
ENSLBEG00000006759	hfm1	96	63.441	ENSJJAG00000017198	Hfm1	68	60.208	Jaculus_jaculus
ENSLBEG00000006759	hfm1	94	82.051	ENSKMAG00000002282	hfm1	92	78.420	Kryptolebias_marmoratus
ENSLBEG00000006759	hfm1	95	67.947	ENSLACG00000010698	HFM1	100	59.492	Latimeria_chalumnae
ENSLBEG00000006759	hfm1	97	73.072	ENSLOCG00000004931	hfm1	94	66.537	Lepisosteus_oculatus
ENSLBEG00000006759	hfm1	79	66.764	ENSLAFG00000015903	-	90	70.641	Loxodonta_africana
ENSLBEG00000006759	hfm1	98	62.471	ENSMFAG00000003649	HFM1	70	57.520	Macaca_fascicularis
ENSLBEG00000006759	hfm1	98	64.830	ENSMMUG00000006819	HFM1	70	60.609	Macaca_mulatta
ENSLBEG00000006759	hfm1	99	86.941	ENSMAMG00000004623	hfm1	100	86.941	Mastacembelus_armatus
ENSLBEG00000006759	hfm1	99	84.848	ENSMZEG00005004679	hfm1	100	84.848	Maylandia_zebra
ENSLBEG00000006759	hfm1	87	63.708	ENSMGAG00000008437	HFM1	95	64.759	Meleagris_gallopavo
ENSLBEG00000006759	hfm1	96	63.842	ENSMAUG00000018858	Hfm1	71	58.146	Mesocricetus_auratus
ENSLBEG00000006759	hfm1	96	65.000	ENSMICG00000037935	HFM1	73	57.934	Microcebus_murinus
ENSLBEG00000006759	hfm1	96	63.723	ENSMOCG00000014812	Hfm1	71	58.049	Microtus_ochrogaster
ENSLBEG00000006759	hfm1	100	85.417	ENSMMOG00000006148	hfm1	99	85.417	Mola_mola
ENSLBEG00000006759	hfm1	99	85.495	ENSMALG00000002401	hfm1	100	85.495	Monopterus_albus
ENSLBEG00000006759	hfm1	89	70.000	MGP_CAROLIEiJ_G0027496	Hfm1	60	73.729	Mus_caroli
ENSLBEG00000006759	hfm1	96	63.365	ENSMUSG00000043410	Hfm1	71	57.605	Mus_musculus
ENSLBEG00000006759	hfm1	96	63.842	MGP_PahariEiJ_G0017268	Hfm1	71	57.704	Mus_pahari
ENSLBEG00000006759	hfm1	96	63.962	MGP_SPRETEiJ_G0028495	Hfm1	71	58.065	Mus_spretus
ENSLBEG00000006759	hfm1	96	65.591	ENSMPUG00000004594	HFM1	64	62.435	Mustela_putorius_furo
ENSLBEG00000006759	hfm1	96	65.472	ENSMLUG00000010200	HFM1	71	59.459	Myotis_lucifugus
ENSLBEG00000006759	hfm1	99	82.892	ENSNBRG00000002910	hfm1	100	82.892	Neolamprologus_brichardi
ENSLBEG00000006759	hfm1	98	63.850	ENSNLEG00000010285	HFM1	70	57.591	Nomascus_leucogenys
ENSLBEG00000006759	hfm1	82	64.238	ENSMEUG00000015788	HFM1	65	58.784	Notamacropus_eugenii
ENSLBEG00000006759	hfm1	98	58.661	ENSOPRG00000013916	HFM1	60	58.661	Ochotona_princeps
ENSLBEG00000006759	hfm1	98	81.154	ENSONIG00000010590	hfm1	99	72.983	Oreochromis_niloticus
ENSLBEG00000006759	hfm1	93	82.398	ENSORLG00000026844	hfm1	99	82.398	Oryzias_latipes
ENSLBEG00000006759	hfm1	97	69.112	ENSORLG00020002951	hfm1	75	64.944	Oryzias_latipes_hni
ENSLBEG00000006759	hfm1	97	78.369	ENSOMEG00000016474	hfm1	75	67.626	Oryzias_melastigma
ENSLBEG00000006759	hfm1	96	65.000	ENSOGAG00000032369	HFM1	76	62.674	Otolemur_garnettii
ENSLBEG00000006759	hfm1	97	65.448	ENSOARG00000015812	HFM1	71	60.136	Ovis_aries
ENSLBEG00000006759	hfm1	98	65.416	ENSPPAG00000024582	HFM1	76	60.806	Pan_paniscus
ENSLBEG00000006759	hfm1	96	65.830	ENSPPRG00000003270	HFM1	71	60.098	Panthera_pardus
ENSLBEG00000006759	hfm1	96	65.830	ENSPTIG00000018881	HFM1	71	60.488	Panthera_tigris_altaica
ENSLBEG00000006759	hfm1	98	65.299	ENSPTRG00000000948	HFM1	70	60.707	Pan_troglodytes
ENSLBEG00000006759	hfm1	96	65.554	ENSPANG00000009838	HFM1	70	60.511	Papio_anubis
ENSLBEG00000006759	hfm1	98	73.866	ENSPKIG00000003810	hfm1	99	73.866	Paramormyrops_kingsleyae
ENSLBEG00000006759	hfm1	95	81.234	ENSPMGG00000011059	hfm1	100	81.234	Periophthalmus_magnuspinnatus
ENSLBEG00000006759	hfm1	96	63.962	ENSPEMG00000022852	Hfm1	71	58.096	Peromyscus_maniculatus_bairdii
ENSLBEG00000006759	hfm1	96	64.839	ENSPCIG00000014233	HFM1	63	62.607	Phascolarctos_cinereus
ENSLBEG00000006759	hfm1	95	80.072	ENSPFOG00000017194	hfm1	100	72.875	Poecilia_formosa
ENSLBEG00000006759	hfm1	96	79.327	ENSPLAG00000000571	hfm1	94	73.578	Poecilia_latipinna
ENSLBEG00000006759	hfm1	96	79.688	ENSPMEG00000019475	hfm1	95	73.745	Poecilia_mexicana
ENSLBEG00000006759	hfm1	98	78.422	ENSPREG00000007803	hfm1	100	78.422	Poecilia_reticulata
ENSLBEG00000006759	hfm1	98	65.416	ENSPPYG00000001163	HFM1	70	60.806	Pongo_abelii
ENSLBEG00000006759	hfm1	97	60.495	ENSPVAG00000009713	HFM1	66	56.745	Pteropus_vampyrus
ENSLBEG00000006759	hfm1	99	84.746	ENSPNYG00000001795	hfm1	100	84.746	Pundamilia_nyererei
ENSLBEG00000006759	hfm1	98	76.485	ENSPNAG00000010865	hfm1	84	76.485	Pygocentrus_nattereri
ENSLBEG00000006759	hfm1	96	63.962	ENSRNOG00000023299	Hfm1	71	57.915	Rattus_norvegicus
ENSLBEG00000006759	hfm1	96	65.554	ENSRROG00000045569	HFM1	70	60.609	Rhinopithecus_roxellana
ENSLBEG00000006759	hfm1	98	64.865	ENSSBOG00000027456	HFM1	66	63.383	Saimiri_boliviensis_boliviensis
ENSLBEG00000006759	hfm1	69	65.455	ENSSHAG00000014616	-	67	69.257	Sarcophilus_harrisii
ENSLBEG00000006759	hfm1	97	73.846	ENSSFOG00015020129	hfm1	65	69.530	Scleropages_formosus
ENSLBEG00000006759	hfm1	95	83.213	ENSSMAG00000006907	hfm1	87	81.706	Scophthalmus_maximus
ENSLBEG00000006759	hfm1	99	84.517	ENSSDUG00000011424	hfm1	100	84.517	Seriola_dumerili
ENSLBEG00000006759	hfm1	99	83.448	ENSSLDG00000016386	hfm1	100	83.448	Seriola_lalandi_dorsalis
ENSLBEG00000006759	hfm1	99	84.051	ENSSPAG00000001023	hfm1	100	84.051	Stegastes_partitus
ENSLBEG00000006759	hfm1	97	66.311	ENSSSCG00000006912	HFM1	68	63.490	Sus_scrofa
ENSLBEG00000006759	hfm1	95	65.417	ENSTGUG00000006172	HFM1	97	62.674	Taeniopygia_guttata
ENSLBEG00000006759	hfm1	55	81.641	ENSTNIG00000006962	hfm1	96	82.516	Tetraodon_nigroviridis
ENSLBEG00000006759	hfm1	97	65.212	ENSTTRG00000013933	HFM1	72	59.785	Tursiops_truncatus
ENSLBEG00000006759	hfm1	96	63.202	ENSVPAG00000011331	HFM1	71	57.352	Vicugna_pacos
ENSLBEG00000006759	hfm1	93	65.261	ENSVVUG00000020760	HFM1	99	59.296	Vulpes_vulpes
ENSLBEG00000006759	hfm1	98	77.982	ENSXMAG00000004178	hfm1	100	77.752	Xiphophorus_maculatus