EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000006979 (Gene tree)
Gene ID: 109980200
Gene Symbol: -
Alias: -
Full Name: heterogeneous nuclear ribonucleoprotein C-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 4948 bases
Position: chrFKLU01011148.1:541-5488
Accession: 109980200
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000009023	RRM_1	PF00076.22	2.8e-13	1	1
ENSLBEP00000009032	RRM_1	PF00076.22	3.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000009511	-	2256	XM_020628729	ENSLBEP00000009023	291 (aa)	XP_020484385	-
ENSLBET00000009521	-	1456	-	ENSLBEP00000009032	330 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000006979's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000006979's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000006979	-	85	78.313	ENSLBEG00000006193	-	86	77.455
ENSLBEG00000006979	-	95	43.836	ENSLBEG00000012873	-	77	52.155
ENSLBEG00000006979	-	93	48.084	ENSLBEG00000011011	-	72	58.257
ENSLBEG00000006979	-	71	51.613	ENSLBEG00000022656	raly	80	53.917
ENSLBEG00000006979	-	99	93.624	ENSLBEG00000024418	-	99	93.624

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000006979	-	73	55.760	ENSG00000184672	RALYL	91	76.623	Homo_sapiens
ENSLBEG00000006979	-	99	83.618	ENSAPOG00000006963	hnrnpc	95	85.666	Acanthochromis_polyacanthus
ENSLBEG00000006979	-	85	77.510	ENSACIG00000016568	-	89	77.899	Amphilophus_citrinellus
ENSLBEG00000006979	-	99	84.694	ENSACIG00000000270	-	99	86.441	Amphilophus_citrinellus
ENSLBEG00000006979	-	93	73.091	ENSAOCG00000021616	-	89	73.793	Amphiprion_ocellaris
ENSLBEG00000006979	-	99	83.618	ENSAOCG00000003896	-	95	85.666	Amphiprion_ocellaris
ENSLBEG00000006979	-	93	73.455	ENSAPEG00000019962	-	92	73.793	Amphiprion_percula
ENSLBEG00000006979	-	99	83.618	ENSAPEG00000001489	-	95	85.666	Amphiprion_percula
ENSLBEG00000006979	-	85	76.494	ENSATEG00000018006	-	78	85.915	Anabas_testudineus
ENSLBEG00000006979	-	91	85.821	ENSATEG00000011734	-	90	87.732	Anabas_testudineus
ENSLBEG00000006979	-	73	52.174	ENSAPLG00000015574	RALYL	78	53.448	Anas_platyrhynchos
ENSLBEG00000006979	-	73	51.316	ENSACAG00000028464	RALYL	77	52.155	Anolis_carolinensis
ENSLBEG00000006979	-	73	55.300	ENSANAG00000023383	RALYL	76	55.455	Aotus_nancymaae
ENSLBEG00000006979	-	99	79.181	ENSACLG00000013636	-	90	84.444	Astatotilapia_calliptera
ENSLBEG00000006979	-	99	79.181	ENSACLG00000000995	-	88	85.556	Astatotilapia_calliptera
ENSLBEG00000006979	-	86	76.190	ENSACLG00000005707	-	92	77.860	Astatotilapia_calliptera
ENSLBEG00000006979	-	71	75.120	ENSAMXG00000042946	hnrnpc	97	76.562	Astyanax_mexicanus
ENSLBEG00000006979	-	85	77.642	ENSAMXG00000034915	zgc:55733	91	76.806	Astyanax_mexicanus
ENSLBEG00000006979	-	73	55.300	ENSCJAG00000000402	RALYL	76	55.455	Callithrix_jacchus
ENSLBEG00000006979	-	86	48.881	ENSCPOG00000012314	RALYL	77	53.247	Cavia_porcellus
ENSLBEG00000006979	-	73	55.300	ENSCCAG00000025003	RALYL	75	76.623	Cebus_capucinus
ENSLBEG00000006979	-	73	55.760	ENSCATG00000042145	RALYL	76	55.909	Cercocebus_atys
ENSLBEG00000006979	-	73	52.838	ENSCLAG00000005228	RALYL	77	53.247	Chinchilla_lanigera
ENSLBEG00000006979	-	71	51.556	ENSCHOG00000013228	RALYL	75	51.327	Choloepus_hoffmanni
ENSLBEG00000006979	-	73	55.760	ENSCANG00000039144	RALYL	76	55.909	Colobus_angolensis_palliatus
ENSLBEG00000006979	-	73	52.609	ENSCGRG00001009241	Ralyl	77	53.448	Cricetulus_griseus_chok1gshd
ENSLBEG00000006979	-	73	78.873	ENSCSEG00000019769	-	72	78.873	Cynoglossus_semilaevis
ENSLBEG00000006979	-	84	71.951	ENSCSEG00000021349	-	84	73.881	Cynoglossus_semilaevis
ENSLBEG00000006979	-	85	80.000	ENSCVAG00000016981	-	86	73.592	Cyprinodon_variegatus
ENSLBEG00000006979	-	90	69.403	ENSCVAG00000002797	-	90	69.403	Cyprinodon_variegatus
ENSLBEG00000006979	-	75	83.105	ENSDARG00000103845	zgc:55733	94	74.330	Danio_rerio
ENSLBEG00000006979	-	79	78.541	ENSDARG00000053810	hnrnpc	86	73.551	Danio_rerio
ENSLBEG00000006979	-	98	46.230	ENSDORG00000003721	Ralyl	77	53.448	Dipodomys_ordii
ENSLBEG00000006979	-	56	55.747	ENSETEG00000014028	RALYL	91	55.801	Echinops_telfairi
ENSLBEG00000006979	-	94	42.553	ENSEBUG00000006049	RALYL	73	48.598	Eptatretus_burgeri
ENSLBEG00000006979	-	97	40.333	ENSEBUG00000012363	hnrnpc	68	45.923	Eptatretus_burgeri
ENSLBEG00000006979	-	75	52.321	ENSEEUG00000007202	RALYL	80	53.165	Erinaceus_europaeus
ENSLBEG00000006979	-	82	75.781	ENSELUG00000007714	-	96	74.733	Esox_lucius
ENSLBEG00000006979	-	84	83.197	ENSELUG00000004132	-	91	79.104	Esox_lucius
ENSLBEG00000006979	-	71	56.279	ENSFALG00000008647	RALYL	96	57.209	Ficedula_albicollis
ENSLBEG00000006979	-	85	72.348	ENSFHEG00000007278	-	90	69.697	Fundulus_heteroclitus
ENSLBEG00000006979	-	91	81.481	ENSFHEG00000003605	-	88	81.481	Fundulus_heteroclitus
ENSLBEG00000006979	-	73	55.251	ENSGALG00000036938	RALYL	76	53.448	Gallus_gallus
ENSLBEG00000006979	-	99	71.429	ENSGAFG00000020992	-	98	73.633	Gambusia_affinis
ENSLBEG00000006979	-	91	81.111	ENSGAFG00000020486	-	88	81.111	Gambusia_affinis
ENSLBEG00000006979	-	73	74.654	ENSGACG00000018932	-	87	75.576	Gasterosteus_aculeatus
ENSLBEG00000006979	-	89	76.515	ENSGACG00000017772	-	99	76.136	Gasterosteus_aculeatus
ENSLBEG00000006979	-	73	55.760	ENSGGOG00000000841	RALYL	76	55.909	Gorilla_gorilla
ENSLBEG00000006979	-	99	79.522	ENSHBUG00000018342	-	88	85.926	Haplochromis_burtoni
ENSLBEG00000006979	-	85	76.892	ENSHBUG00000010527	-	86	77.338	Haplochromis_burtoni
ENSLBEG00000006979	-	73	52.402	ENSHGLG00000004866	RALYL	77	52.814	Heterocephalus_glaber_female
ENSLBEG00000006979	-	73	52.402	ENSHGLG00100017480	RALYL	77	52.814	Heterocephalus_glaber_male
ENSLBEG00000006979	-	93	65.263	ENSHCOG00000012333	hnrnpc	95	69.966	Hippocampus_comes
ENSLBEG00000006979	-	75	83.105	ENSIPUG00000008666	zgc:55733	93	83.568	Ictalurus_punctatus
ENSLBEG00000006979	-	85	75.100	ENSIPUG00000011271	hnrnpc	97	80.269	Ictalurus_punctatus
ENSLBEG00000006979	-	78	48.057	ENSSTOG00000012583	RALYL	78	53.017	Ictidomys_tridecemlineatus
ENSLBEG00000006979	-	85	76.707	ENSKMAG00000018265	-	86	76.173	Kryptolebias_marmoratus
ENSLBEG00000006979	-	90	81.955	ENSKMAG00000011170	-	87	83.895	Kryptolebias_marmoratus
ENSLBEG00000006979	-	85	69.960	ENSLOCG00000002560	hnrnpc	93	71.429	Lepisosteus_oculatus
ENSLBEG00000006979	-	73	55.760	ENSMNEG00000033288	RALYL	76	55.909	Macaca_nemestrina
ENSLBEG00000006979	-	73	55.760	ENSMLEG00000038284	RALYL	76	55.909	Mandrillus_leucophaeus
ENSLBEG00000006979	-	85	76.305	ENSMAMG00000008033	-	94	77.372	Mastacembelus_armatus
ENSLBEG00000006979	-	99	83.276	ENSMAMG00000012236	-	99	82.935	Mastacembelus_armatus
ENSLBEG00000006979	-	86	76.190	ENSMZEG00005024249	-	86	77.860	Maylandia_zebra
ENSLBEG00000006979	-	99	79.181	ENSMZEG00005020460	-	88	85.556	Maylandia_zebra
ENSLBEG00000006979	-	73	52.609	ENSMAUG00000015149	Ralyl	77	53.448	Mesocricetus_auratus
ENSLBEG00000006979	-	73	55.505	ENSMICG00000005558	RALYL	79	75.641	Microcebus_murinus
ENSLBEG00000006979	-	73	52.609	ENSMOCG00000017371	Ralyl	77	53.448	Microtus_ochrogaster
ENSLBEG00000006979	-	85	85.425	ENSMMOG00000021465	-	93	87.640	Mola_mola
ENSLBEG00000006979	-	85	75.709	ENSMMOG00000019520	-	95	72.692	Mola_mola
ENSLBEG00000006979	-	85	78.947	ENSMALG00000014623	-	84	78.277	Monopterus_albus
ENSLBEG00000006979	-	85	77.733	ENSMALG00000007520	-	90	78.439	Monopterus_albus
ENSLBEG00000006979	-	73	52.174	ENSMUSG00000039717	Ralyl	91	75.325	Mus_musculus
ENSLBEG00000006979	-	73	53.043	ENSMPUG00000010724	RALYL	77	52.586	Mustela_putorius_furo
ENSLBEG00000006979	-	73	52.609	ENSNGAG00000013375	Ralyl	77	53.448	Nannospalax_galili
ENSLBEG00000006979	-	99	66.330	ENSNBRG00000015676	-	93	72.727	Neolamprologus_brichardi
ENSLBEG00000006979	-	99	82.550	ENSNBRG00000004912	-	89	85.926	Neolamprologus_brichardi
ENSLBEG00000006979	-	73	55.760	ENSNLEG00000002702	RALYL	72	56.422	Nomascus_leucogenys
ENSLBEG00000006979	-	61	48.969	ENSOPRG00000013650	-	98	48.454	Ochotona_princeps
ENSLBEG00000006979	-	97	46.179	ENSODEG00000001012	RALYL	78	53.390	Octodon_degus
ENSLBEG00000006979	-	99	76.923	ENSONIG00000007859	-	94	84.307	Oreochromis_niloticus
ENSLBEG00000006979	-	85	76.892	ENSONIG00000018350	-	86	77.338	Oreochromis_niloticus
ENSLBEG00000006979	-	85	75.486	ENSORLG00000003144	-	85	76.678	Oryzias_latipes
ENSLBEG00000006979	-	85	74.899	ENSORLG00000009999	-	87	74.532	Oryzias_latipes
ENSLBEG00000006979	-	85	74.899	ENSORLG00020018228	hnrnpc	87	74.532	Oryzias_latipes_hni
ENSLBEG00000006979	-	85	74.899	ENSORLG00015019755	-	87	74.532	Oryzias_latipes_hsok
ENSLBEG00000006979	-	85	75.486	ENSORLG00015009460	-	84	76.678	Oryzias_latipes_hsok
ENSLBEG00000006979	-	85	78.400	ENSOMEG00000022665	-	85	79.348	Oryzias_melastigma
ENSLBEG00000006979	-	85	75.304	ENSOMEG00000020488	-	87	75.655	Oryzias_melastigma
ENSLBEG00000006979	-	73	55.760	ENSPPAG00000038705	RALYL	76	55.909	Pan_paniscus
ENSLBEG00000006979	-	73	56.364	ENSPPRG00000018612	RALYL	76	55.856	Panthera_pardus
ENSLBEG00000006979	-	73	56.364	ENSPTIG00000020331	RALYL	76	55.856	Panthera_tigris_altaica
ENSLBEG00000006979	-	73	55.760	ENSPTRG00000020381	RALYL	76	55.909	Pan_troglodytes
ENSLBEG00000006979	-	73	55.760	ENSPANG00000029305	RALYL	76	55.909	Papio_anubis
ENSLBEG00000006979	-	77	83.260	ENSPKIG00000022837	-	86	80.797	Paramormyrops_kingsleyae
ENSLBEG00000006979	-	91	77.978	ENSPKIG00000008592	-	87	77.256	Paramormyrops_kingsleyae
ENSLBEG00000006979	-	80	46.316	ENSPSIG00000011135	RALYL	76	53.913	Pelodiscus_sinensis
ENSLBEG00000006979	-	99	63.668	ENSPMGG00000017774	-	90	66.047	Periophthalmus_magnuspinnatus
ENSLBEG00000006979	-	74	85.047	ENSPMGG00000013144	-	81	85.047	Periophthalmus_magnuspinnatus
ENSLBEG00000006979	-	73	52.609	ENSPEMG00000016447	Ralyl	77	53.448	Peromyscus_maniculatus_bairdii
ENSLBEG00000006979	-	71	52.655	ENSPMAG00000002407	RALYL	96	53.540	Petromyzon_marinus
ENSLBEG00000006979	-	91	79.259	ENSPFOG00000001583	-	88	81.550	Poecilia_formosa
ENSLBEG00000006979	-	99	67.752	ENSPFOG00000002643	-	95	72.990	Poecilia_formosa
ENSLBEG00000006979	-	85	76.305	ENSPLAG00000000061	-	88	74.394	Poecilia_latipinna
ENSLBEG00000006979	-	91	78.439	ENSPLAG00000015305	-	88	80.741	Poecilia_latipinna
ENSLBEG00000006979	-	85	76.305	ENSPMEG00000016524	-	95	72.669	Poecilia_mexicana
ENSLBEG00000006979	-	91	81.481	ENSPMEG00000004802	-	88	81.481	Poecilia_mexicana
ENSLBEG00000006979	-	85	75.502	ENSPREG00000001852	-	92	74.638	Poecilia_reticulata
ENSLBEG00000006979	-	86	80.876	ENSPREG00000007928	-	88	80.741	Poecilia_reticulata
ENSLBEG00000006979	-	75	51.695	ENSPVAG00000010821	RALYL	78	52.542	Pteropus_vampyrus
ENSLBEG00000006979	-	93	74.545	ENSPNYG00000003747	-	91	77.656	Pundamilia_nyererei
ENSLBEG00000006979	-	85	83.806	ENSPNYG00000020293	-	92	84.074	Pundamilia_nyererei
ENSLBEG00000006979	-	79	78.879	ENSPNAG00000015686	hnrnpc	88	77.947	Pygocentrus_nattereri
ENSLBEG00000006979	-	84	71.600	ENSPNAG00000019200	zgc:55733	86	72.000	Pygocentrus_nattereri
ENSLBEG00000006979	-	73	55.760	ENSRROG00000023925	RALYL	80	74.684	Rhinopithecus_roxellana
ENSLBEG00000006979	-	85	77.344	ENSSFOG00015012924	-	91	85.556	Scleropages_formosus
ENSLBEG00000006979	-	85	76.285	ENSSFOG00015012015	-	95	73.180	Scleropages_formosus
ENSLBEG00000006979	-	99	64.605	ENSSMAG00000011147	-	96	72.830	Scophthalmus_maximus
ENSLBEG00000006979	-	85	81.377	ENSSMAG00000013592	-	86	83.209	Scophthalmus_maximus
ENSLBEG00000006979	-	85	81.855	ENSSDUG00000006730	-	86	78.388	Seriola_dumerili
ENSLBEG00000006979	-	99	84.932	ENSSDUG00000001723	-	95	86.348	Seriola_dumerili
ENSLBEG00000006979	-	89	84.791	ENSSLDG00000007454	-	88	85.502	Seriola_lalandi_dorsalis
ENSLBEG00000006979	-	86	80.478	ENSSLDG00000007474	-	95	76.157	Seriola_lalandi_dorsalis
ENSLBEG00000006979	-	53	75.824	ENSSARG00000002374	RALYL	78	45.291	Sorex_araneus
ENSLBEG00000006979	-	85	76.707	ENSSPAG00000013996	-	86	76.895	Stegastes_partitus
ENSLBEG00000006979	-	99	84.589	ENSSPAG00000023204	-	95	86.348	Stegastes_partitus
ENSLBEG00000006979	-	74	52.155	ENSTGUG00000011689	RALYL	78	53.879	Taeniopygia_guttata
ENSLBEG00000006979	-	85	83.806	ENSTRUG00000020158	-	89	82.222	Takifugu_rubripes
ENSLBEG00000006979	-	85	79.762	ENSTNIG00000007427	-	89	79.927	Tetraodon_nigroviridis
ENSLBEG00000006979	-	96	67.143	ENSTNIG00000000334	-	97	71.321	Tetraodon_nigroviridis
ENSLBEG00000006979	-	77	45.679	ENSTBEG00000005551	RALYL	88	47.807	Tupaia_belangeri
ENSLBEG00000006979	-	75	48.918	ENSTTRG00000015762	RALYL	78	50.216	Tursiops_truncatus
ENSLBEG00000006979	-	73	50.917	ENSVPAG00000008501	RALYL	76	51.584	Vicugna_pacos
ENSLBEG00000006979	-	52	83.125	ENSXCOG00000019434	-	76	82.778	Xiphophorus_couchianus
ENSLBEG00000006979	-	90	76.030	ENSXCOG00000006552	-	86	76.030	Xiphophorus_couchianus
ENSLBEG00000006979	-	91	80.741	ENSXMAG00000009333	-	88	80.741	Xiphophorus_maculatus
ENSLBEG00000006979	-	85	75.904	ENSXMAG00000022849	-	93	73.611	Xiphophorus_maculatus