EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000007623 (Gene tree)
Gene ID: 110000490
Gene Symbol: sbno1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 18253 bases
Position: chrFKLU01000675.1:35139-53391
Accession: 110000490
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000009989	ResIII	PF04851.15	4.2e-07	1	1
ENSLBEP00000010035	ResIII	PF04851.15	4.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000010532	-	7563	XM_020655777	ENSLBEP00000009989	1408 (aa)	XP_020511433	UPI0009B3F9A4
ENSLBET00000010578	-	4158	-	ENSLBEP00000010035	1385 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000007623's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000007623's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000007623	sbno1	70	63.719	ENSLBEG00000025016	si:ch73-63e15.2	82	63.090

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000007623	sbno1	99	75.821	ENSG00000139697	SBNO1	99	75.611	Homo_sapiens
ENSLBEG00000007623	sbno1	83	93.142	ENSAPOG00000003196	sbno1	98	93.316	Acanthochromis_polyacanthus
ENSLBEG00000007623	sbno1	99	76.011	ENSAMEG00000015151	SBNO1	99	75.662	Ailuropoda_melanoleuca
ENSLBEG00000007623	sbno1	100	85.624	ENSACIG00000008088	sbno1	99	85.976	Amphilophus_citrinellus
ENSLBEG00000007623	sbno1	100	90.554	ENSAOCG00000014859	sbno1	99	90.909	Amphiprion_ocellaris
ENSLBEG00000007623	sbno1	100	90.554	ENSAPEG00000006069	sbno1	99	90.909	Amphiprion_percula
ENSLBEG00000007623	sbno1	100	91.548	ENSATEG00000006667	sbno1	100	91.477	Anabas_testudineus
ENSLBEG00000007623	sbno1	98	76.143	ENSAPLG00000015674	SBNO1	99	76.251	Anas_platyrhynchos
ENSLBEG00000007623	sbno1	98	74.929	ENSACAG00000015441	SBNO1	88	74.842	Anolis_carolinensis
ENSLBEG00000007623	sbno1	95	85.481	ENSANAG00000029958	-	99	85.072	Aotus_nancymaae
ENSLBEG00000007623	sbno1	99	86.383	ENSACLG00000024913	sbno1	100	85.591	Astatotilapia_calliptera
ENSLBEG00000007623	sbno1	100	82.390	ENSAMXG00000019473	sbno1	100	82.320	Astyanax_mexicanus
ENSLBEG00000007623	sbno1	100	76.187	ENSBTAG00000020505	SBNO1	100	75.262	Bos_taurus
ENSLBEG00000007623	sbno1	99	75.891	ENSCJAG00000016599	SBNO1	99	75.611	Callithrix_jacchus
ENSLBEG00000007623	sbno1	99	76.064	ENSCAFG00000007503	SBNO1	99	78.571	Canis_familiaris
ENSLBEG00000007623	sbno1	95	82.765	ENSCAFG00020015363	SBNO1	99	82.765	Canis_lupus_dingo
ENSLBEG00000007623	sbno1	95	85.740	ENSCHIG00000008382	SBNO1	100	84.821	Capra_hircus
ENSLBEG00000007623	sbno1	99	75.891	ENSTSYG00000012749	SBNO1	99	78.378	Carlito_syrichta
ENSLBEG00000007623	sbno1	90	85.533	ENSCAPG00000000384	SBNO1	99	85.533	Cavia_aperea
ENSLBEG00000007623	sbno1	95	85.533	ENSCPOG00000008109	SBNO1	99	85.533	Cavia_porcellus
ENSLBEG00000007623	sbno1	99	71.628	ENSCCAG00000035316	SBNO1	99	74.503	Cebus_capucinus
ENSLBEG00000007623	sbno1	91	85.278	ENSCATG00000008239	SBNO1	99	85.278	Cercocebus_atys
ENSLBEG00000007623	sbno1	95	85.353	ENSCLAG00000008995	SBNO1	99	85.353	Chinchilla_lanigera
ENSLBEG00000007623	sbno1	84	82.213	ENSCSAG00000002064	SBNO1	99	82.097	Chlorocebus_sabaeus
ENSLBEG00000007623	sbno1	96	73.302	ENSCHOG00000008814	SBNO1	96	73.023	Choloepus_hoffmanni
ENSLBEG00000007623	sbno1	98	75.680	ENSCPBG00000025968	SBNO1	99	75.582	Chrysemys_picta_bellii
ENSLBEG00000007623	sbno1	99	72.067	ENSCANG00000042688	-	99	71.858	Colobus_angolensis_palliatus
ENSLBEG00000007623	sbno1	95	83.871	ENSCGRG00001017470	Sbno1	100	83.571	Cricetulus_griseus_chok1gshd
ENSLBEG00000007623	sbno1	95	83.871	ENSCGRG00000004756	Sbno1	100	83.571	Cricetulus_griseus_crigri
ENSLBEG00000007623	sbno1	100	88.139	ENSCSEG00000011919	sbno1	100	88.210	Cynoglossus_semilaevis
ENSLBEG00000007623	sbno1	100	88.369	ENSCVAG00000007038	sbno1	100	88.298	Cyprinodon_variegatus
ENSLBEG00000007623	sbno1	100	81.445	ENSDARG00000099080	sbno1	100	81.799	Danio_rerio
ENSLBEG00000007623	sbno1	99	79.238	ENSDNOG00000017147	SBNO1	96	79.238	Dasypus_novemcinctus
ENSLBEG00000007623	sbno1	99	72.277	ENSDORG00000015261	Sbno1	99	71.924	Dipodomys_ordii
ENSLBEG00000007623	sbno1	93	73.270	ENSETEG00000005620	SBNO1	93	73.270	Echinops_telfairi
ENSLBEG00000007623	sbno1	74	62.150	ENSEBUG00000013823	sbno1	93	60.659	Eptatretus_burgeri
ENSLBEG00000007623	sbno1	51	72.276	ENSEASG00005012595	-	92	72.690	Equus_asinus_asinus
ENSLBEG00000007623	sbno1	99	75.891	ENSECAG00000006127	SBNO1	99	76.280	Equus_caballus
ENSLBEG00000007623	sbno1	83	79.781	ENSEEUG00000003793	SBNO1	82	79.781	Erinaceus_europaeus
ENSLBEG00000007623	sbno1	100	83.828	ENSELUG00000002886	sbno1	99	83.534	Esox_lucius
ENSLBEG00000007623	sbno1	99	76.240	ENSFCAG00000015331	SBNO1	99	75.891	Felis_catus
ENSLBEG00000007623	sbno1	98	76.071	ENSFALG00000009273	SBNO1	99	76.392	Ficedula_albicollis
ENSLBEG00000007623	sbno1	95	82.790	ENSFDAG00000014232	SBNO1	99	82.226	Fukomys_damarensis
ENSLBEG00000007623	sbno1	100	88.369	ENSFHEG00000007360	sbno1	100	88.511	Fundulus_heteroclitus
ENSLBEG00000007623	sbno1	94	85.146	ENSGMOG00000018229	sbno1	99	84.771	Gadus_morhua
ENSLBEG00000007623	sbno1	88	75.930	ENSGALG00000003392	SBNO1	99	76.274	Gallus_gallus
ENSLBEG00000007623	sbno1	100	89.149	ENSGAFG00000003960	sbno1	100	88.936	Gambusia_affinis
ENSLBEG00000007623	sbno1	94	88.839	ENSGACG00000015633	sbno1	99	88.839	Gasterosteus_aculeatus
ENSLBEG00000007623	sbno1	96	85.185	ENSGAGG00000001065	SBNO1	99	84.821	Gopherus_agassizii
ENSLBEG00000007623	sbno1	95	85.714	ENSGGOG00000015000	SBNO1	99	85.714	Gorilla_gorilla
ENSLBEG00000007623	sbno1	99	80.086	ENSHBUG00000011910	sbno1	100	79.211	Haplochromis_burtoni
ENSLBEG00000007623	sbno1	95	85.662	ENSHGLG00000014165	-	99	85.125	Heterocephalus_glaber_female
ENSLBEG00000007623	sbno1	91	91.485	ENSHCOG00000003246	sbno1	95	91.485	Hippocampus_comes
ENSLBEG00000007623	sbno1	100	82.191	ENSIPUG00000015830	Sbno1	98	82.524	Ictalurus_punctatus
ENSLBEG00000007623	sbno1	95	85.278	ENSSTOG00000023221	SBNO1	99	85.278	Ictidomys_tridecemlineatus
ENSLBEG00000007623	sbno1	95	81.867	ENSJJAG00000001741	Sbno1	99	81.867	Jaculus_jaculus
ENSLBEG00000007623	sbno1	100	90.142	ENSKMAG00000009696	sbno1	100	89.929	Kryptolebias_marmoratus
ENSLBEG00000007623	sbno1	100	71.840	ENSLACG00000017227	SBNO1	99	74.782	Latimeria_chalumnae
ENSLBEG00000007623	sbno1	100	81.544	ENSLOCG00000005725	sbno1	97	81.320	Lepisosteus_oculatus
ENSLBEG00000007623	sbno1	99	75.961	ENSLAFG00000002135	SBNO1	99	75.821	Loxodonta_africana
ENSLBEG00000007623	sbno1	95	81.883	ENSMFAG00000031429	SBNO1	99	81.883	Macaca_fascicularis
ENSLBEG00000007623	sbno1	95	81.883	ENSMMUG00000011496	SBNO1	99	81.883	Macaca_mulatta
ENSLBEG00000007623	sbno1	95	85.099	ENSMLEG00000033260	SBNO1	99	85.099	Mandrillus_leucophaeus
ENSLBEG00000007623	sbno1	100	90.780	ENSMAMG00000005473	sbno1	100	90.780	Mastacembelus_armatus
ENSLBEG00000007623	sbno1	98	76.323	ENSMGAG00000003274	SBNO1	99	76.429	Meleagris_gallopavo
ENSLBEG00000007623	sbno1	51	73.045	ENSMAUG00000004834	-	99	73.324	Mesocricetus_auratus
ENSLBEG00000007623	sbno1	95	82.577	ENSMICG00000006573	-	99	82.194	Microcebus_murinus
ENSLBEG00000007623	sbno1	95	85.199	ENSMOCG00000009390	Sbno1	99	85.199	Microtus_ochrogaster
ENSLBEG00000007623	sbno1	100	84.244	ENSMMOG00000008691	sbno1	99	84.528	Mola_mola
ENSLBEG00000007623	sbno1	99	75.666	ENSMODG00000012470	SBNO1	98	75.456	Monodelphis_domestica
ENSLBEG00000007623	sbno1	100	89.716	ENSMALG00000001056	sbno1	100	89.645	Monopterus_albus
ENSLBEG00000007623	sbno1	99	76.599	MGP_CAROLIEiJ_G0027749	Sbno1	95	91.228	Mus_caroli
ENSLBEG00000007623	sbno1	99	76.582	ENSMUSG00000038095	Sbno1	94	91.228	Mus_musculus
ENSLBEG00000007623	sbno1	99	76.117	MGP_PahariEiJ_G0024329	Sbno1	95	91.228	Mus_pahari
ENSLBEG00000007623	sbno1	99	76.512	MGP_SPRETEiJ_G0028747	Sbno1	95	91.228	Mus_spretus
ENSLBEG00000007623	sbno1	99	76.310	ENSMPUG00000001658	SBNO1	99	75.961	Mustela_putorius_furo
ENSLBEG00000007623	sbno1	99	75.698	ENSMLUG00000017159	SBNO1	99	75.402	Myotis_lucifugus
ENSLBEG00000007623	sbno1	92	86.328	ENSNGAG00000012620	Sbno1	98	86.328	Nannospalax_galili
ENSLBEG00000007623	sbno1	100	85.724	ENSNBRG00000019189	sbno1	100	84.943	Neolamprologus_brichardi
ENSLBEG00000007623	sbno1	99	73.147	ENSNLEG00000001502	SBNO1	99	76.703	Nomascus_leucogenys
ENSLBEG00000007623	sbno1	62	74.214	ENSMEUG00000008768	-	93	76.730	Notamacropus_eugenii
ENSLBEG00000007623	sbno1	99	75.158	ENSOPRG00000011054	SBNO1	99	74.791	Ochotona_princeps
ENSLBEG00000007623	sbno1	95	85.714	ENSODEG00000009997	SBNO1	99	85.714	Octodon_degus
ENSLBEG00000007623	sbno1	100	90.297	ENSONIG00000015348	sbno1	100	89.802	Oreochromis_niloticus
ENSLBEG00000007623	sbno1	98	75.284	ENSOCUG00000002441	SBNO1	95	75.321	Oryctolagus_cuniculus
ENSLBEG00000007623	sbno1	100	88.102	ENSORLG00000001593	sbno1	100	88.314	Oryzias_latipes
ENSLBEG00000007623	sbno1	100	88.102	ENSORLG00020015216	sbno1	100	88.173	Oryzias_latipes_hni
ENSLBEG00000007623	sbno1	100	88.173	ENSORLG00015002726	sbno1	100	88.173	Oryzias_latipes_hsok
ENSLBEG00000007623	sbno1	99	88.486	ENSOMEG00000019313	sbno1	99	87.989	Oryzias_melastigma
ENSLBEG00000007623	sbno1	51	71.269	ENSOGAG00000010781	-	99	72.370	Otolemur_garnettii
ENSLBEG00000007623	sbno1	100	76.031	ENSOARG00000004404	SBNO1	100	75.175	Ovis_aries
ENSLBEG00000007623	sbno1	95	85.714	ENSPPAG00000024635	SBNO1	99	85.714	Pan_paniscus
ENSLBEG00000007623	sbno1	99	76.240	ENSPPRG00000022092	SBNO1	99	75.891	Panthera_pardus
ENSLBEG00000007623	sbno1	99	76.261	ENSPTIG00000017803	SBNO1	99	75.910	Panthera_tigris_altaica
ENSLBEG00000007623	sbno1	95	85.714	ENSPTRG00000005597	SBNO1	99	85.714	Pan_troglodytes
ENSLBEG00000007623	sbno1	95	85.099	ENSPANG00000011640	SBNO1	99	85.099	Papio_anubis
ENSLBEG00000007623	sbno1	100	80.986	ENSPKIG00000001441	sbno1	100	80.986	Paramormyrops_kingsleyae
ENSLBEG00000007623	sbno1	92	72.838	ENSPSIG00000009256	-	100	72.859	Pelodiscus_sinensis
ENSLBEG00000007623	sbno1	98	75.771	ENSPSIG00000009572	-	99	75.581	Pelodiscus_sinensis
ENSLBEG00000007623	sbno1	95	85.018	ENSPEMG00000016087	Sbno1	100	84.107	Peromyscus_maniculatus_bairdii
ENSLBEG00000007623	sbno1	99	75.543	ENSPCIG00000010985	SBNO1	99	75.403	Phascolarctos_cinereus
ENSLBEG00000007623	sbno1	100	89.574	ENSPFOG00000005069	sbno1	100	89.433	Poecilia_formosa
ENSLBEG00000007623	sbno1	100	89.574	ENSPLAG00000015015	sbno1	100	89.433	Poecilia_latipinna
ENSLBEG00000007623	sbno1	100	89.511	ENSPMEG00000021212	sbno1	100	89.369	Poecilia_mexicana
ENSLBEG00000007623	sbno1	100	89.086	ENSPREG00000017746	sbno1	100	88.944	Poecilia_reticulata
ENSLBEG00000007623	sbno1	99	75.787	ENSPPYG00000005084	SBNO1	99	75.787	Pongo_abelii
ENSLBEG00000007623	sbno1	84	77.828	ENSPCAG00000008634	SBNO1	88	67.768	Procavia_capensis
ENSLBEG00000007623	sbno1	96	84.532	ENSPCOG00000024277	SBNO1	99	84.532	Propithecus_coquereli
ENSLBEG00000007623	sbno1	87	85.089	ENSPVAG00000015304	SBNO1	87	85.089	Pteropus_vampyrus
ENSLBEG00000007623	sbno1	100	90.284	ENSPNYG00000004291	sbno1	100	89.716	Pundamilia_nyererei
ENSLBEG00000007623	sbno1	100	83.121	ENSPNAG00000015622	sbno1	100	82.394	Pygocentrus_nattereri
ENSLBEG00000007623	sbno1	95	85.199	ENSRNOG00000001064	Sbno1	99	85.353	Rattus_norvegicus
ENSLBEG00000007623	sbno1	95	85.099	ENSRROG00000034230	SBNO1	99	85.099	Rhinopithecus_roxellana
ENSLBEG00000007623	sbno1	97	73.787	ENSSBOG00000015422	SBNO1	99	74.265	Saimiri_boliviensis_boliviensis
ENSLBEG00000007623	sbno1	100	81.070	ENSSFOG00015019025	sbno1	100	81.633	Scleropages_formosus
ENSLBEG00000007623	sbno1	100	91.051	ENSSMAG00000013640	sbno1	100	90.980	Scophthalmus_maximus
ENSLBEG00000007623	sbno1	100	92.188	ENSSDUG00000023480	sbno1	100	91.974	Seriola_dumerili
ENSLBEG00000007623	sbno1	100	92.259	ENSSLDG00000007928	sbno1	100	92.045	Seriola_lalandi_dorsalis
ENSLBEG00000007623	sbno1	89	82.903	ENSSARG00000002594	SBNO1	89	83.065	Sorex_araneus
ENSLBEG00000007623	sbno1	98	75.484	ENSSPUG00000012640	SBNO1	99	75.460	Sphenodon_punctatus
ENSLBEG00000007623	sbno1	100	91.702	ENSSPAG00000016244	sbno1	100	91.489	Stegastes_partitus
ENSLBEG00000007623	sbno1	99	75.941	ENSSSCG00000009776	SBNO1	99	75.732	Sus_scrofa
ENSLBEG00000007623	sbno1	98	75.857	ENSTGUG00000005380	SBNO1	99	76.110	Taeniopygia_guttata
ENSLBEG00000007623	sbno1	99	87.739	ENSTRUG00000018490	sbno1	99	87.943	Takifugu_rubripes
ENSLBEG00000007623	sbno1	57	84.367	ENSTNIG00000013506	sbno1	99	84.270	Tetraodon_nigroviridis
ENSLBEG00000007623	sbno1	99	76.240	ENSUAMG00000019671	SBNO1	99	75.891	Ursus_americanus
ENSLBEG00000007623	sbno1	99	76.240	ENSUMAG00000004002	SBNO1	99	75.891	Ursus_maritimus
ENSLBEG00000007623	sbno1	95	73.333	ENSVPAG00000007024	SBNO1	95	73.333	Vicugna_pacos
ENSLBEG00000007623	sbno1	99	76.171	ENSVVUG00000027807	SBNO1	99	75.821	Vulpes_vulpes
ENSLBEG00000007623	sbno1	99	73.529	ENSXETG00000031930	SBNO1	99	73.282	Xenopus_tropicalis
ENSLBEG00000007623	sbno1	89	86.422	ENSXCOG00000011607	sbno1	99	85.181	Xiphophorus_couchianus
ENSLBEG00000007623	sbno1	100	89.298	ENSXMAG00000002140	sbno1	100	89.227	Xiphophorus_maculatus