EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000008061 (Gene tree)
Gene ID: 109991273
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 6182 bases
Position: chrFKLU01000008.1:192030-198211
Accession: 109991273
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000010426	PPR	PF01535.20	4.9e-14	1	2
ENSLBEP00000010426	PPR	PF01535.20	4.9e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000010989	-	3379	XM_020643545	ENSLBEP00000010426	717 (aa)	XP_020499201	UPI0009B3E741

Gene Model

Click here to download ENSLBEG00000008061's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000008061's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000008061	ptcd1	83	48.203	ENSG00000106246	PTCD1	88	47.452	Homo_sapiens
ENSLBEG00000008061	ptcd1	83	48.203	ENSG00000248919	ATP5MF-PTCD1	81	47.826	Homo_sapiens
ENSLBEG00000008061	ptcd1	89	65.023	ENSAPOG00000010679	ptcd1	96	64.561	Acanthochromis_polyacanthus
ENSLBEG00000008061	ptcd1	88	45.758	ENSAMEG00000006224	-	86	45.688	Ailuropoda_melanoleuca
ENSLBEG00000008061	ptcd1	93	70.623	ENSACIG00000017861	ptcd1	97	70.030	Amphilophus_citrinellus
ENSLBEG00000008061	ptcd1	89	66.044	ENSAOCG00000022617	ptcd1	94	66.044	Amphiprion_ocellaris
ENSLBEG00000008061	ptcd1	99	64.196	ENSAOCG00000020741	-	99	64.196	Amphiprion_ocellaris
ENSLBEG00000008061	ptcd1	99	64.336	ENSAPEG00000022632	ptcd1	99	64.336	Amphiprion_percula
ENSLBEG00000008061	ptcd1	97	69.275	ENSATEG00000007016	ptcd1	99	68.465	Anabas_testudineus
ENSLBEG00000008061	ptcd1	85	48.490	ENSAPLG00000006862	-	98	47.426	Anas_platyrhynchos
ENSLBEG00000008061	ptcd1	83	48.689	ENSACAG00000012871	-	79	48.033	Anolis_carolinensis
ENSLBEG00000008061	ptcd1	80	48.393	ENSANAG00000035790	-	86	47.899	Aotus_nancymaae
ENSLBEG00000008061	ptcd1	99	67.218	ENSACLG00000002824	ptcd1	99	66.804	Astatotilapia_calliptera
ENSLBEG00000008061	ptcd1	84	49.214	ENSAMXG00000037292	ptcd1	89	49.214	Astyanax_mexicanus
ENSLBEG00000008061	ptcd1	89	45.821	ENSBTAG00000020440	-	82	46.796	Bos_taurus
ENSLBEG00000008061	ptcd1	80	48.649	ENSCJAG00000015815	-	89	46.603	Callithrix_jacchus
ENSLBEG00000008061	ptcd1	92	45.109	ENSCAFG00000015055	-	89	45.015	Canis_familiaris
ENSLBEG00000008061	ptcd1	92	45.109	ENSCAFG00020014480	-	89	45.015	Canis_lupus_dingo
ENSLBEG00000008061	ptcd1	86	47.642	ENSCHIG00000027000	-	88	48.357	Capra_hircus
ENSLBEG00000008061	ptcd1	80	48.382	ENSTSYG00000029495	-	83	47.458	Carlito_syrichta
ENSLBEG00000008061	ptcd1	85	45.701	ENSCAPG00000014660	-	94	45.541	Cavia_aperea
ENSLBEG00000008061	ptcd1	88	45.220	ENSCPOG00000001780	-	92	45.068	Cavia_porcellus
ENSLBEG00000008061	ptcd1	80	48.142	ENSCCAG00000034025	-	84	47.049	Cebus_capucinus
ENSLBEG00000008061	ptcd1	83	48.293	ENSCATG00000040859	-	87	47.987	Cercocebus_atys
ENSLBEG00000008061	ptcd1	88	45.373	ENSCLAG00000006354	-	93	45.889	Chinchilla_lanigera
ENSLBEG00000008061	ptcd1	76	49.030	ENSCSAG00000017794	-	83	48.601	Chlorocebus_sabaeus
ENSLBEG00000008061	ptcd1	86	47.297	ENSCPBG00000020866	-	89	46.526	Chrysemys_picta_bellii
ENSLBEG00000008061	ptcd1	84	47.170	ENSCANG00000023441	-	89	47.468	Colobus_angolensis_palliatus
ENSLBEG00000008061	ptcd1	86	47.484	ENSCGRG00001023686	Ptcd1	88	47.484	Cricetulus_griseus_chok1gshd
ENSLBEG00000008061	ptcd1	86	47.484	ENSCGRG00000015031	Ptcd1	88	47.484	Cricetulus_griseus_crigri
ENSLBEG00000008061	ptcd1	99	56.164	ENSCSEG00000002378	ptcd1	100	55.753	Cynoglossus_semilaevis
ENSLBEG00000008061	ptcd1	99	64.820	ENSCVAG00000015826	ptcd1	99	64.404	Cyprinodon_variegatus
ENSLBEG00000008061	ptcd1	94	66.024	ENSCVAG00000003621	ptcd1	98	65.579	Cyprinodon_variegatus
ENSLBEG00000008061	ptcd1	88	50.536	ENSDARG00000076176	ptcd1	92	50.077	Danio_rerio
ENSLBEG00000008061	ptcd1	84	46.463	ENSDNOG00000009957	-	88	45.440	Dasypus_novemcinctus
ENSLBEG00000008061	ptcd1	84	47.444	ENSDORG00000000740	Ptcd1	94	45.037	Dipodomys_ordii
ENSLBEG00000008061	ptcd1	83	38.889	ENSEBUG00000014515	ptcd1	93	39.572	Eptatretus_burgeri
ENSLBEG00000008061	ptcd1	80	48.185	ENSEASG00005002480	-	89	46.635	Equus_asinus_asinus
ENSLBEG00000008061	ptcd1	86	46.095	ENSECAG00000016617	-	89	46.552	Equus_caballus
ENSLBEG00000008061	ptcd1	85	56.563	ENSELUG00000016517	ptcd1	86	55.882	Esox_lucius
ENSLBEG00000008061	ptcd1	80	48.229	ENSFCAG00000015069	-	83	48.229	Felis_catus
ENSLBEG00000008061	ptcd1	85	47.235	ENSFALG00000013803	-	92	46.142	Ficedula_albicollis
ENSLBEG00000008061	ptcd1	86	46.677	ENSFDAG00000006393	-	89	47.377	Fukomys_damarensis
ENSLBEG00000008061	ptcd1	78	69.558	ENSFHEG00000012491	ptcd1	96	69.381	Fundulus_heteroclitus
ENSLBEG00000008061	ptcd1	86	61.490	ENSGMOG00000007639	ptcd1	99	61.356	Gadus_morhua
ENSLBEG00000008061	ptcd1	79	48.435	ENSGALG00000004711	-	86	47.840	Gallus_gallus
ENSLBEG00000008061	ptcd1	99	61.517	ENSGAFG00000013175	ptcd1	99	61.517	Gambusia_affinis
ENSLBEG00000008061	ptcd1	89	70.918	ENSGACG00000016607	ptcd1	99	70.807	Gasterosteus_aculeatus
ENSLBEG00000008061	ptcd1	79	46.633	ENSGAGG00000021832	-	88	46.296	Gopherus_agassizii
ENSLBEG00000008061	ptcd1	80	49.153	ENSGGOG00000015123	-	85	48.350	Gorilla_gorilla
ENSLBEG00000008061	ptcd1	99	67.310	ENSHBUG00000018275	ptcd1	99	66.897	Haplochromis_burtoni
ENSLBEG00000008061	ptcd1	86	48.504	ENSHGLG00000017621	-	89	48.189	Heterocephalus_glaber_female
ENSLBEG00000008061	ptcd1	86	48.504	ENSHGLG00100007218	-	89	48.189	Heterocephalus_glaber_male
ENSLBEG00000008061	ptcd1	98	55.134	ENSHCOG00000010784	ptcd1	98	55.775	Hippocampus_comes
ENSLBEG00000008061	ptcd1	83	47.727	ENSSTOG00000001682	-	88	48.220	Ictidomys_tridecemlineatus
ENSLBEG00000008061	ptcd1	82	48.425	ENSJJAG00000000319	Ptcd1	86	48.185	Jaculus_jaculus
ENSLBEG00000008061	ptcd1	98	63.750	ENSKMAG00000008708	ptcd1	98	63.687	Kryptolebias_marmoratus
ENSLBEG00000008061	ptcd1	80	49.069	ENSLACG00000011172	ptcd1	82	48.731	Latimeria_chalumnae
ENSLBEG00000008061	ptcd1	88	49.548	ENSLOCG00000004833	ptcd1	93	50.083	Lepisosteus_oculatus
ENSLBEG00000008061	ptcd1	84	47.049	ENSLAFG00000002588	-	93	45.345	Loxodonta_africana
ENSLBEG00000008061	ptcd1	83	48.293	ENSMFAG00000041324	-	87	47.987	Macaca_fascicularis
ENSLBEG00000008061	ptcd1	83	48.130	ENSMMUG00000030408	-	87	47.826	Macaca_mulatta
ENSLBEG00000008061	ptcd1	83	48.455	ENSMNEG00000043786	-	87	47.735	Macaca_nemestrina
ENSLBEG00000008061	ptcd1	83	36.364	ENSMLEG00000031179	-	85	37.316	Mandrillus_leucophaeus
ENSLBEG00000008061	ptcd1	99	67.033	ENSMAMG00000007623	ptcd1	98	67.220	Mastacembelus_armatus
ENSLBEG00000008061	ptcd1	99	67.080	ENSMZEG00005012722	ptcd1	99	66.667	Maylandia_zebra
ENSLBEG00000008061	ptcd1	81	49.013	ENSMGAG00000004211	-	80	49.013	Meleagris_gallopavo
ENSLBEG00000008061	ptcd1	80	47.603	ENSMICG00000017428	-	83	47.341	Microcebus_murinus
ENSLBEG00000008061	ptcd1	99	68.663	ENSMMOG00000020243	ptcd1	99	67.967	Mola_mola
ENSLBEG00000008061	ptcd1	86	44.306	ENSMODG00000001350	-	87	44.306	Monodelphis_domestica
ENSLBEG00000008061	ptcd1	99	67.353	ENSMALG00000018442	ptcd1	99	67.586	Monopterus_albus
ENSLBEG00000008061	ptcd1	85	46.349	MGP_CAROLIEiJ_G0028011	Ptcd1	89	46.751	Mus_caroli
ENSLBEG00000008061	ptcd1	82	47.833	ENSMUSG00000029624	Ptcd1	87	46.850	Mus_musculus
ENSLBEG00000008061	ptcd1	89	45.166	MGP_PahariEiJ_G0024580	Ptcd1	90	46.939	Mus_pahari
ENSLBEG00000008061	ptcd1	82	47.195	MGP_SPRETEiJ_G0029012	Ptcd1	86	47.697	Mus_spretus
ENSLBEG00000008061	ptcd1	88	45.846	ENSMPUG00000016518	-	92	45.979	Mustela_putorius_furo
ENSLBEG00000008061	ptcd1	80	49.150	ENSMLUG00000010994	-	83	46.541	Myotis_lucifugus
ENSLBEG00000008061	ptcd1	98	66.197	ENSNBRG00000010079	ptcd1	96	68.189	Neolamprologus_brichardi
ENSLBEG00000008061	ptcd1	74	46.812	ENSNLEG00000011060	-	91	46.950	Nomascus_leucogenys
ENSLBEG00000008061	ptcd1	84	46.042	ENSMEUG00000006930	-	87	46.016	Notamacropus_eugenii
ENSLBEG00000008061	ptcd1	70	58.036	ENSOPRG00000013647	-	73	58.036	Ochotona_princeps
ENSLBEG00000008061	ptcd1	84	68.689	ENSONIG00000003168	ptcd1	99	68.197	Oreochromis_niloticus
ENSLBEG00000008061	ptcd1	76	47.611	ENSOANG00000007728	-	73	47.247	Ornithorhynchus_anatinus
ENSLBEG00000008061	ptcd1	80	48.814	ENSOCUG00000010584	-	81	48.814	Oryctolagus_cuniculus
ENSLBEG00000008061	ptcd1	95	63.265	ENSORLG00000009275	ptcd1	99	62.216	Oryzias_latipes
ENSLBEG00000008061	ptcd1	97	62.162	ENSORLG00020000988	ptcd1	99	62.162	Oryzias_latipes_hni
ENSLBEG00000008061	ptcd1	97	61.735	ENSORLG00015010557	ptcd1	99	61.735	Oryzias_latipes_hsok
ENSLBEG00000008061	ptcd1	95	62.811	ENSOMEG00000020627	ptcd1	98	62.811	Oryzias_melastigma
ENSLBEG00000008061	ptcd1	84	45.631	ENSOGAG00000010877	-	88	46.353	Otolemur_garnettii
ENSLBEG00000008061	ptcd1	88	43.969	ENSOARG00000018676	-	91	44.055	Ovis_aries
ENSLBEG00000008061	ptcd1	83	47.876	ENSPPAG00000036024	-	88	47.134	Pan_paniscus
ENSLBEG00000008061	ptcd1	80	48.061	ENSPPRG00000003478	-	83	48.061	Panthera_pardus
ENSLBEG00000008061	ptcd1	83	48.203	ENSPTRG00000019452	-	88	47.452	Pan_troglodytes
ENSLBEG00000008061	ptcd1	83	48.455	ENSPANG00000016730	-	87	48.148	Papio_anubis
ENSLBEG00000008061	ptcd1	82	51.515	ENSPKIG00000014215	ptcd1	87	51.178	Paramormyrops_kingsleyae
ENSLBEG00000008061	ptcd1	81	46.321	ENSPSIG00000011184	-	99	46.077	Pelodiscus_sinensis
ENSLBEG00000008061	ptcd1	70	40.381	ENSPMAG00000009667	ptcd1	100	40.190	Petromyzon_marinus
ENSLBEG00000008061	ptcd1	84	45.568	ENSPCIG00000024778	-	93	43.696	Phascolarctos_cinereus
ENSLBEG00000008061	ptcd1	99	61.088	ENSPFOG00000004458	ptcd1	99	61.570	Poecilia_formosa
ENSLBEG00000008061	ptcd1	99	61.411	ENSPLAG00000011051	ptcd1	99	61.708	Poecilia_latipinna
ENSLBEG00000008061	ptcd1	99	61.330	ENSPMEG00000020547	ptcd1	99	61.833	Poecilia_mexicana
ENSLBEG00000008061	ptcd1	99	62.238	ENSPREG00000000059	ptcd1	99	62.535	Poecilia_reticulata
ENSLBEG00000008061	ptcd1	83	46.278	ENSPPYG00000017377	-	92	46.278	Pongo_abelii
ENSLBEG00000008061	ptcd1	74	54.331	ENSPCAG00000001852	-	84	53.125	Procavia_capensis
ENSLBEG00000008061	ptcd1	82	48.074	ENSPCOG00000018596	-	85	47.500	Propithecus_coquereli
ENSLBEG00000008061	ptcd1	67	50.654	ENSPVAG00000007529	-	50	62.617	Pteropus_vampyrus
ENSLBEG00000008061	ptcd1	99	67.080	ENSPNYG00000019993	ptcd1	99	66.667	Pundamilia_nyererei
ENSLBEG00000008061	ptcd1	90	49.269	ENSPNAG00000014931	ptcd1	96	49.123	Pygocentrus_nattereri
ENSLBEG00000008061	ptcd1	83	48.276	ENSRNOG00000000987	Ptcd1	88	48.197	Rattus_norvegicus
ENSLBEG00000008061	ptcd1	83	47.903	ENSRBIG00000043393	-	87	48.214	Rhinopithecus_bieti
ENSLBEG00000008061	ptcd1	83	48.065	ENSRROG00000036420	-	87	48.377	Rhinopithecus_roxellana
ENSLBEG00000008061	ptcd1	80	48.311	ENSSBOG00000024114	-	89	45.497	Saimiri_boliviensis_boliviensis
ENSLBEG00000008061	ptcd1	86	45.101	ENSSHAG00000011376	-	89	46.231	Sarcophilus_harrisii
ENSLBEG00000008061	ptcd1	81	53.530	ENSSFOG00015007909	ptcd1	81	53.377	Scleropages_formosus
ENSLBEG00000008061	ptcd1	87	66.873	ENSSMAG00000000218	ptcd1	99	66.199	Scophthalmus_maximus
ENSLBEG00000008061	ptcd1	96	68.195	ENSSDUG00000015671	ptcd1	98	69.310	Seriola_dumerili
ENSLBEG00000008061	ptcd1	93	70.571	ENSSLDG00000014261	ptcd1	99	67.677	Seriola_lalandi_dorsalis
ENSLBEG00000008061	ptcd1	82	46.751	ENSSPUG00000003540	-	85	46.349	Sphenodon_punctatus
ENSLBEG00000008061	ptcd1	99	65.900	ENSSPAG00000011049	ptcd1	99	66.035	Stegastes_partitus
ENSLBEG00000008061	ptcd1	82	48.392	ENSSSCG00000007622	-	94	47.319	Sus_scrofa
ENSLBEG00000008061	ptcd1	85	46.549	ENSTGUG00000007563	-	99	46.314	Taeniopygia_guttata
ENSLBEG00000008061	ptcd1	97	64.092	ENSTRUG00000013471	ptcd1	99	63.260	Takifugu_rubripes
ENSLBEG00000008061	ptcd1	96	63.623	ENSTNIG00000008271	ptcd1	99	62.952	Tetraodon_nigroviridis
ENSLBEG00000008061	ptcd1	85	45.755	ENSTBEG00000011021	-	89	45.440	Tupaia_belangeri
ENSLBEG00000008061	ptcd1	86	47.310	ENSTTRG00000003006	-	90	46.445	Tursiops_truncatus
ENSLBEG00000008061	ptcd1	80	47.769	ENSUAMG00000008049	-	83	47.492	Ursus_americanus
ENSLBEG00000008061	ptcd1	89	46.636	ENSVVUG00000008836	-	92	46.544	Vulpes_vulpes
ENSLBEG00000008061	ptcd1	81	48.154	ENSXETG00000009891	ptcd1	89	45.907	Xenopus_tropicalis
ENSLBEG00000008061	ptcd1	98	62.983	ENSXMAG00000015540	ptcd1	98	62.569	Xiphophorus_maculatus