EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000008436 (Gene tree)
Gene ID: 109994141
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 33887 bases
Position: chrFKLU01000280.1:430320-464206
Accession: 109994141
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000010976	RRM_1	PF00076.22	2.6e-38	1	3
ENSLBEP00000010976	RRM_1	PF00076.22	2.6e-38	2	3
ENSLBEP00000010976	RRM_1	PF00076.22	2.6e-38	3	3
ENSLBEP00000011005	RRM_1	PF00076.22	3.5e-38	1	3
ENSLBEP00000011005	RRM_1	PF00076.22	3.5e-38	2	3
ENSLBEP00000011005	RRM_1	PF00076.22	3.5e-38	3	3
ENSLBEP00000010959	RRM_1	PF00076.22	4e-38	1	3
ENSLBEP00000010959	RRM_1	PF00076.22	4e-38	2	3
ENSLBEP00000010959	RRM_1	PF00076.22	4e-38	3	3
ENSLBEP00000010904	RRM_1	PF00076.22	4.4e-38	1	3
ENSLBEP00000010904	RRM_1	PF00076.22	4.4e-38	2	3
ENSLBEP00000010904	RRM_1	PF00076.22	4.4e-38	3	3
ENSLBEP00000010918	RRM_1	PF00076.22	4.4e-38	1	3
ENSLBEP00000010918	RRM_1	PF00076.22	4.4e-38	2	3
ENSLBEP00000010918	RRM_1	PF00076.22	4.4e-38	3	3
ENSLBEP00000010942	RRM_1	PF00076.22	4.4e-38	1	3
ENSLBEP00000010942	RRM_1	PF00076.22	4.4e-38	2	3
ENSLBEP00000010942	RRM_1	PF00076.22	4.4e-38	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000011557	-	5736	XM_020647333	ENSLBEP00000010976	544 (aa)	XP_020502989	UPI0009B4BD61
ENSLBET00000011586	-	1773	XM_020647334	ENSLBEP00000011005	590 (aa)	XP_020502990	-
ENSLBET00000011540	-	5922	XM_020647332	ENSLBEP00000010959	606 (aa)	XP_020502988	UPI0009B2FDC9
ENSLBET00000011498	-	5511	XM_020647329	ENSLBEP00000010918	614 (aa)	XP_020502985	UPI0009B38D96
ENSLBET00000011484	-	5391	XM_020647330	ENSLBEP00000010904	614 (aa)	XP_020502986	UPI0009B38D96
ENSLBET00000011522	-	5946	XM_020647327	ENSLBEP00000010942	614 (aa)	XP_020502983	UPI0009B38D96

Gene Model

Click here to download ENSLBEG00000008436's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000008436's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000008436	rbm47	55	53.618	ENSLBEG00000027047	hnrnpr	68	45.261
ENSLBEG00000008436	rbm47	60	51.952	ENSLBEG00000014984	syncripl	73	45.370
ENSLBEG00000008436	rbm47	54	51.333	ENSLBEG00000020798	syncrip	64	44.554
ENSLBEG00000008436	rbm47	78	50.554	ENSLBEG00000020994	a1cf	87	51.955

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000008436	rbm47	100	80.585	ENSG00000163694	RBM47	100	84.018	Homo_sapiens
ENSLBEG00000008436	rbm47	100	95.373	ENSAPOG00000011062	rbm47	100	95.373	Acanthochromis_polyacanthus
ENSLBEG00000008436	rbm47	93	83.662	ENSAMEG00000009672	RBM47	100	75.954	Ailuropoda_melanoleuca
ENSLBEG00000008436	rbm47	100	92.061	ENSACIG00000011531	rbm47	100	92.230	Amphilophus_citrinellus
ENSLBEG00000008436	rbm47	100	94.962	ENSAOCG00000022245	rbm47	100	95.116	Amphiprion_ocellaris
ENSLBEG00000008436	rbm47	100	95.128	ENSAPEG00000018304	rbm47	100	95.128	Amphiprion_percula
ENSLBEG00000008436	rbm47	100	93.199	ENSATEG00000018400	rbm47	100	92.422	Anabas_testudineus
ENSLBEG00000008436	rbm47	100	75.167	ENSAPLG00000013974	RBM47	100	75.667	Anas_platyrhynchos
ENSLBEG00000008436	rbm47	100	75.456	ENSACAG00000011833	RBM47	100	76.159	Anolis_carolinensis
ENSLBEG00000008436	rbm47	100	81.481	ENSANAG00000029440	RBM47	100	82.713	Aotus_nancymaae
ENSLBEG00000008436	rbm47	100	92.443	ENSACLG00000016902	rbm47	100	92.545	Astatotilapia_calliptera
ENSLBEG00000008436	rbm47	99	83.887	ENSAMXG00000021794	rbm47	100	82.899	Astyanax_mexicanus
ENSLBEG00000008436	rbm47	100	77.041	ENSBTAG00000002356	RBM47	100	77.090	Bos_taurus
ENSLBEG00000008436	rbm47	100	81.383	ENSCJAG00000019385	RBM47	100	80.256	Callithrix_jacchus
ENSLBEG00000008436	rbm47	93	81.870	ENSCAFG00000015898	RBM47	100	75.585	Canis_familiaris
ENSLBEG00000008436	rbm47	78	81.870	ENSCAFG00020010558	RBM47	94	80.526	Canis_lupus_dingo
ENSLBEG00000008436	rbm47	100	77.041	ENSCHIG00000026214	RBM47	100	77.090	Capra_hircus
ENSLBEG00000008436	rbm47	84	89.720	ENSTSYG00000033612	RBM47	93	88.479	Carlito_syrichta
ENSLBEG00000008436	rbm47	100	71.026	ENSCAPG00000008426	RBM47	100	71.026	Cavia_aperea
ENSLBEG00000008436	rbm47	100	78.772	ENSCPOG00000014100	RBM47	100	79.540	Cavia_porcellus
ENSLBEG00000008436	rbm47	100	82.979	ENSCCAG00000030129	-	100	80.000	Cebus_capucinus
ENSLBEG00000008436	rbm47	99	54.622	ENSCCAG00000024397	-	99	54.958	Cebus_capucinus
ENSLBEG00000008436	rbm47	100	80.585	ENSCATG00000042064	RBM47	100	82.713	Cercocebus_atys
ENSLBEG00000008436	rbm47	100	80.637	ENSCLAG00000001684	RBM47	100	79.747	Chinchilla_lanigera
ENSLBEG00000008436	rbm47	93	83.898	ENSCSAG00000017060	RBM47	100	76.833	Chlorocebus_sabaeus
ENSLBEG00000008436	rbm47	89	74.324	ENSCHOG00000011731	RBM47	88	75.615	Choloepus_hoffmanni
ENSLBEG00000008436	rbm47	100	81.633	ENSCPBG00000013831	RBM47	100	78.702	Chrysemys_picta_bellii
ENSLBEG00000008436	rbm47	100	80.319	ENSCANG00000019997	RBM47	100	82.447	Colobus_angolensis_palliatus
ENSLBEG00000008436	rbm47	100	80.585	ENSCGRG00001000623	-	100	79.082	Cricetulus_griseus_chok1gshd
ENSLBEG00000008436	rbm47	100	68.670	ENSCGRG00001020102	-	100	76.658	Cricetulus_griseus_chok1gshd
ENSLBEG00000008436	rbm47	100	77.806	ENSCGRG00000007762	-	100	78.481	Cricetulus_griseus_crigri
ENSLBEG00000008436	rbm47	93	71.680	ENSCGRG00000014760	-	100	76.393	Cricetulus_griseus_crigri
ENSLBEG00000008436	rbm47	100	89.713	ENSCSEG00000004545	rbm47	100	89.713	Cynoglossus_semilaevis
ENSLBEG00000008436	rbm47	100	92.443	ENSCVAG00000020144	rbm47	100	92.802	Cyprinodon_variegatus
ENSLBEG00000008436	rbm47	99	85.459	ENSDARG00000061985	rbm47	100	82.208	Danio_rerio
ENSLBEG00000008436	rbm47	93	82.584	ENSDNOG00000046854	RBM47	100	76.599	Dasypus_novemcinctus
ENSLBEG00000008436	rbm47	100	78.481	ENSDORG00000010144	Rbm47	100	75.748	Dipodomys_ordii
ENSLBEG00000008436	rbm47	100	75.333	ENSETEG00000009194	RBM47	100	76.744	Echinops_telfairi
ENSLBEG00000008436	rbm47	90	74.493	ENSEBUG00000011912	rbm47	84	74.566	Eptatretus_burgeri
ENSLBEG00000008436	rbm47	93	81.742	ENSEASG00005008443	RBM47	100	76.678	Equus_asinus_asinus
ENSLBEG00000008436	rbm47	93	81.742	ENSECAG00000004400	RBM47	100	76.678	Equus_caballus
ENSLBEG00000008436	rbm47	76	81.385	ENSEEUG00000001194	RBM47	75	83.983	Erinaceus_europaeus
ENSLBEG00000008436	rbm47	100	87.562	ENSELUG00000006148	rbm47	100	87.817	Esox_lucius
ENSLBEG00000008436	rbm47	93	83.662	ENSFCAG00000012399	RBM47	100	77.273	Felis_catus
ENSLBEG00000008436	rbm47	100	80.357	ENSFALG00000002861	RBM47	100	78.500	Ficedula_albicollis
ENSLBEG00000008436	rbm47	100	76.884	ENSFDAG00000016326	RBM47	100	76.884	Fukomys_damarensis
ENSLBEG00000008436	rbm47	100	91.184	ENSFHEG00000007938	rbm47	100	88.633	Fundulus_heteroclitus
ENSLBEG00000008436	rbm47	100	87.056	ENSGMOG00000014802	rbm47	100	83.333	Gadus_morhua
ENSLBEG00000008436	rbm47	72	80.662	ENSGALG00000014267	RBM47	99	83.511	Gallus_gallus
ENSLBEG00000008436	rbm47	72	88.205	ENSGAFG00000020571	rbm47	98	91.421	Gambusia_affinis
ENSLBEG00000008436	rbm47	100	91.584	ENSGACG00000016223	rbm47	100	92.526	Gasterosteus_aculeatus
ENSLBEG00000008436	rbm47	100	81.633	ENSGAGG00000020051	RBM47	100	78.702	Gopherus_agassizii
ENSLBEG00000008436	rbm47	100	80.585	ENSGGOG00000001367	RBM47	100	82.713	Gorilla_gorilla
ENSLBEG00000008436	rbm47	100	92.443	ENSHBUG00000003520	rbm47	100	92.545	Haplochromis_burtoni
ENSLBEG00000008436	rbm47	100	58.984	ENSHGLG00000016914	RBM47	100	80.000	Heterocephalus_glaber_female
ENSLBEG00000008436	rbm47	100	78.934	ENSHGLG00100014028	-	100	80.000	Heterocephalus_glaber_male
ENSLBEG00000008436	rbm47	100	67.839	ENSHGLG00100003071	-	100	67.839	Heterocephalus_glaber_male
ENSLBEG00000008436	rbm47	99	92.542	ENSHCOG00000002074	rbm47	99	94.330	Hippocampus_comes
ENSLBEG00000008436	rbm47	99	87.404	ENSIPUG00000004743	rbm47	100	83.980	Ictalurus_punctatus
ENSLBEG00000008436	rbm47	93	81.972	ENSSTOG00000004727	RBM47	100	81.867	Ictidomys_tridecemlineatus
ENSLBEG00000008436	rbm47	93	84.225	ENSJJAG00000013823	Rbm47	100	75.874	Jaculus_jaculus
ENSLBEG00000008436	rbm47	100	90.955	ENSKMAG00000000084	rbm47	100	91.026	Kryptolebias_marmoratus
ENSLBEG00000008436	rbm47	92	88.102	ENSLACG00000007196	RBM47	100	78.487	Latimeria_chalumnae
ENSLBEG00000008436	rbm47	100	82.631	ENSLOCG00000012966	rbm47	95	83.165	Lepisosteus_oculatus
ENSLBEG00000008436	rbm47	100	78.772	ENSLAFG00000011998	RBM47	100	76.795	Loxodonta_africana
ENSLBEG00000008436	rbm47	100	80.585	ENSMFAG00000037967	RBM47	100	82.713	Macaca_fascicularis
ENSLBEG00000008436	rbm47	93	83.898	ENSMMUG00000012036	RBM47	100	82.051	Macaca_mulatta
ENSLBEG00000008436	rbm47	100	80.585	ENSMNEG00000040774	RBM47	100	82.713	Macaca_nemestrina
ENSLBEG00000008436	rbm47	100	81.905	ENSMLEG00000041432	RBM47	100	84.227	Mandrillus_leucophaeus
ENSLBEG00000008436	rbm47	100	93.703	ENSMAMG00000019143	rbm47	100	93.830	Mastacembelus_armatus
ENSLBEG00000008436	rbm47	100	92.443	ENSMZEG00005023659	rbm47	100	92.443	Maylandia_zebra
ENSLBEG00000008436	rbm47	100	80.612	ENSMGAG00000012226	RBM47	100	78.109	Meleagris_gallopavo
ENSLBEG00000008436	rbm47	100	80.371	ENSMAUG00000006493	Rbm47	100	81.627	Mesocricetus_auratus
ENSLBEG00000008436	rbm47	93	80.857	ENSMICG00000026417	RBM47	100	79.947	Microcebus_murinus
ENSLBEG00000008436	rbm47	100	80.319	ENSMOCG00000021170	Rbm47	100	81.579	Microtus_ochrogaster
ENSLBEG00000008436	rbm47	100	92.904	ENSMMOG00000007260	rbm47	100	92.904	Mola_mola
ENSLBEG00000008436	rbm47	56	77.170	ENSMODG00000015426	-	97	77.419	Monodelphis_domestica
ENSLBEG00000008436	rbm47	100	81.330	ENSMODG00000007003	RBM47	100	77.462	Monodelphis_domestica
ENSLBEG00000008436	rbm47	100	76.350	ENSMODG00000020561	-	100	72.589	Monodelphis_domestica
ENSLBEG00000008436	rbm47	100	94.207	ENSMALG00000005167	rbm47	100	94.344	Monopterus_albus
ENSLBEG00000008436	rbm47	100	80.319	MGP_CAROLIEiJ_G0027258	Rbm47	100	81.117	Mus_caroli
ENSLBEG00000008436	rbm47	100	80.319	ENSMUSG00000070780	Rbm47	100	81.117	Mus_musculus
ENSLBEG00000008436	rbm47	100	80.319	MGP_PahariEiJ_G0017040	Rbm47	100	81.117	Mus_pahari
ENSLBEG00000008436	rbm47	100	80.319	MGP_SPRETEiJ_G0028253	Rbm47	100	81.117	Mus_spretus
ENSLBEG00000008436	rbm47	93	83.380	ENSMPUG00000006177	RBM47	94	75.920	Mustela_putorius_furo
ENSLBEG00000008436	rbm47	100	77.863	ENSMLUG00000000889	RBM47	100	76.421	Myotis_lucifugus
ENSLBEG00000008436	rbm47	100	78.571	ENSNGAG00000003325	Rbm47	100	75.000	Nannospalax_galili
ENSLBEG00000008436	rbm47	99	93.059	ENSNBRG00000015092	rbm47	100	91.843	Neolamprologus_brichardi
ENSLBEG00000008436	rbm47	100	80.585	ENSNLEG00000017151	RBM47	100	82.713	Nomascus_leucogenys
ENSLBEG00000008436	rbm47	65	86.236	ENSMEUG00000009516	-	99	79.529	Notamacropus_eugenii
ENSLBEG00000008436	rbm47	85	84.167	ENSOPRG00000016507	-	75	84.167	Ochotona_princeps
ENSLBEG00000008436	rbm47	100	75.294	ENSODEG00000004873	RBM47	100	76.471	Octodon_degus
ENSLBEG00000008436	rbm47	100	93.103	ENSONIG00000009061	rbm47	100	93.103	Oreochromis_niloticus
ENSLBEG00000008436	rbm47	99	80.102	ENSOANG00000008978	RBM47	100	77.258	Ornithorhynchus_anatinus
ENSLBEG00000008436	rbm47	100	77.494	ENSOCUG00000012034	RBM47	100	76.254	Oryctolagus_cuniculus
ENSLBEG00000008436	rbm47	100	91.457	ENSORLG00000005847	rbm47	100	91.795	Oryzias_latipes
ENSLBEG00000008436	rbm47	100	91.457	ENSORLG00020005154	rbm47	100	91.795	Oryzias_latipes_hni
ENSLBEG00000008436	rbm47	100	91.457	ENSORLG00015000066	rbm47	100	91.795	Oryzias_latipes_hsok
ENSLBEG00000008436	rbm47	100	91.940	ENSOMEG00000010730	rbm47	100	90.694	Oryzias_melastigma
ENSLBEG00000008436	rbm47	93	83.099	ENSOGAG00000029367	-	100	76.087	Otolemur_garnettii
ENSLBEG00000008436	rbm47	93	77.465	ENSOGAG00000025193	-	100	70.973	Otolemur_garnettii
ENSLBEG00000008436	rbm47	100	67.224	ENSOARG00000012711	RBM47	100	69.231	Ovis_aries
ENSLBEG00000008436	rbm47	93	83.898	ENSPPAG00000029763	RBM47	95	82.713	Pan_paniscus
ENSLBEG00000008436	rbm47	100	73.199	ENSPPRG00000012873	RBM47	99	81.217	Panthera_pardus
ENSLBEG00000008436	rbm47	85	74.162	ENSPTIG00000017046	RBM47	100	74.753	Panthera_tigris_altaica
ENSLBEG00000008436	rbm47	100	80.585	ENSPTRG00000016006	RBM47	100	82.713	Pan_troglodytes
ENSLBEG00000008436	rbm47	100	80.585	ENSPANG00000005980	RBM47	100	82.713	Papio_anubis
ENSLBEG00000008436	rbm47	92	87.288	ENSPKIG00000005037	rbm47	100	77.870	Paramormyrops_kingsleyae
ENSLBEG00000008436	rbm47	100	77.960	ENSPKIG00000013431	RBM47	98	83.594	Paramormyrops_kingsleyae
ENSLBEG00000008436	rbm47	89	79.096	ENSPSIG00000017516	RBM47	97	79.096	Pelodiscus_sinensis
ENSLBEG00000008436	rbm47	100	91.356	ENSPMGG00000018540	rbm47	100	91.356	Periophthalmus_magnuspinnatus
ENSLBEG00000008436	rbm47	100	80.053	ENSPEMG00000011088	Rbm47	100	81.316	Peromyscus_maniculatus_bairdii
ENSLBEG00000008436	rbm47	99	91.538	ENSPFOG00000007997	rbm47	100	88.399	Poecilia_formosa
ENSLBEG00000008436	rbm47	99	91.282	ENSPLAG00000002072	rbm47	100	90.885	Poecilia_latipinna
ENSLBEG00000008436	rbm47	99	91.538	ENSPMEG00000017492	rbm47	100	91.517	Poecilia_mexicana
ENSLBEG00000008436	rbm47	100	91.184	ENSPREG00000008456	rbm47	100	91.260	Poecilia_reticulata
ENSLBEG00000008436	rbm47	93	74.157	ENSPPYG00000014688	RBM47	99	67.350	Pongo_abelii
ENSLBEG00000008436	rbm47	87	79.028	ENSPCAG00000011879	RBM47	81	81.750	Procavia_capensis
ENSLBEG00000008436	rbm47	93	80.899	ENSPCOG00000023451	RBM47	100	80.739	Propithecus_coquereli
ENSLBEG00000008436	rbm47	93	81.513	ENSPVAG00000003812	RBM47	100	75.626	Pteropus_vampyrus
ENSLBEG00000008436	rbm47	99	92.545	ENSPNYG00000022868	rbm47	100	91.220	Pundamilia_nyererei
ENSLBEG00000008436	rbm47	99	85.934	ENSPNAG00000007940	rbm47	100	87.212	Pygocentrus_nattereri
ENSLBEG00000008436	rbm47	100	78.061	ENSRNOG00000002408	Rbm47	100	76.080	Rattus_norvegicus
ENSLBEG00000008436	rbm47	100	80.319	ENSRBIG00000039601	RBM47	100	82.447	Rhinopithecus_bieti
ENSLBEG00000008436	rbm47	100	80.319	ENSRROG00000044696	RBM47	100	82.447	Rhinopithecus_roxellana
ENSLBEG00000008436	rbm47	100	74.074	ENSSBOG00000028475	RBM47	100	79.218	Saimiri_boliviensis_boliviensis
ENSLBEG00000008436	rbm47	100	81.122	ENSSHAG00000017576	RBM47	100	81.122	Sarcophilus_harrisii
ENSLBEG00000008436	rbm47	100	77.983	ENSSFOG00015024101	RBM47	100	77.983	Scleropages_formosus
ENSLBEG00000008436	rbm47	100	82.609	ENSSFOG00015012445	rbm47	100	83.632	Scleropages_formosus
ENSLBEG00000008436	rbm47	100	92.443	ENSSMAG00000009744	rbm47	100	92.545	Scophthalmus_maximus
ENSLBEG00000008436	rbm47	100	94.108	ENSSDUG00000022684	rbm47	100	94.108	Seriola_dumerili
ENSLBEG00000008436	rbm47	100	94.247	ENSSLDG00000003109	rbm47	100	94.247	Seriola_lalandi_dorsalis
ENSLBEG00000008436	rbm47	85	77.876	ENSSARG00000001735	RBM47	75	79.646	Sorex_araneus
ENSLBEG00000008436	rbm47	100	76.846	ENSSPUG00000007515	RBM47	100	82.804	Sphenodon_punctatus
ENSLBEG00000008436	rbm47	100	94.962	ENSSPAG00000001257	rbm47	100	95.116	Stegastes_partitus
ENSLBEG00000008436	rbm47	100	75.000	ENSSSCG00000008796	RBM47	100	76.756	Sus_scrofa
ENSLBEG00000008436	rbm47	100	80.102	ENSTGUG00000008705	RBM47	100	77.796	Taeniopygia_guttata
ENSLBEG00000008436	rbm47	100	90.339	ENSTRUG00000014050	rbm47	100	90.169	Takifugu_rubripes
ENSLBEG00000008436	rbm47	100	90.759	ENSTNIG00000006127	rbm47	100	90.594	Tetraodon_nigroviridis
ENSLBEG00000008436	rbm47	80	81.921	ENSTBEG00000001607	RBM47	76	79.947	Tupaia_belangeri
ENSLBEG00000008436	rbm47	100	75.084	ENSTTRG00000002839	RBM47	100	76.678	Tursiops_truncatus
ENSLBEG00000008436	rbm47	93	83.662	ENSUAMG00000021346	RBM47	100	76.254	Ursus_americanus
ENSLBEG00000008436	rbm47	53	80.952	ENSVPAG00000000641	-	56	77.241	Vicugna_pacos
ENSLBEG00000008436	rbm47	93	81.180	ENSVVUG00000014774	RBM47	100	75.667	Vulpes_vulpes
ENSLBEG00000008436	rbm47	100	79.949	ENSXETG00000012802	rbm47	100	76.833	Xenopus_tropicalis
ENSLBEG00000008436	rbm47	100	85.375	ENSXCOG00000000780	rbm47	100	91.421	Xiphophorus_couchianus
ENSLBEG00000008436	rbm47	100	91.940	ENSXMAG00000009874	rbm47	100	92.031	Xiphophorus_maculatus