EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000008452 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 2840 bases
Position: chrFKLU01000216.1:104647-107486
Accession: 109991857
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000010927	HVSL	PF09749.9	2.1e-54	1	1
ENSLBEP00000010946	HVSL	PF09749.9	9.9e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000011527	-	885	-	ENSLBEP00000010946	294 (aa)	-	-
ENSLBET00000011507	-	942	XM_020644276	ENSLBEP00000010927	313 (aa)	XP_020499932	-

Gene Model

Click here to download ENSLBEG00000008452's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000008452's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000008452	usb1	64	52.632	ENSG00000103005	USB1	88	52.381	Homo_sapiens
ENSLBEG00000008452	usb1	86	67.754	ENSAPOG00000011942	usb1	91	68.872	Acanthochromis_polyacanthus
ENSLBEG00000008452	usb1	64	53.927	ENSAMEG00000017205	USB1	74	53.266	Ailuropoda_melanoleuca
ENSLBEG00000008452	usb1	68	75.115	ENSACIG00000012234	usb1	80	75.115	Amphilophus_citrinellus
ENSLBEG00000008452	usb1	86	67.986	ENSAOCG00000014831	usb1	91	69.884	Amphiprion_ocellaris
ENSLBEG00000008452	usb1	86	67.626	ENSAPEG00000000296	usb1	91	69.498	Amphiprion_percula
ENSLBEG00000008452	usb1	86	69.314	ENSATEG00000009348	usb1	89	72.441	Anabas_testudineus
ENSLBEG00000008452	usb1	64	54.167	ENSAPLG00000002756	USB1	91	53.623	Anas_platyrhynchos
ENSLBEG00000008452	usb1	65	51.031	ENSACAG00000015481	USB1	87	51.000	Anolis_carolinensis
ENSLBEG00000008452	usb1	64	52.105	ENSANAG00000035640	USB1	75	50.754	Aotus_nancymaae
ENSLBEG00000008452	usb1	79	70.518	ENSACLG00000020586	usb1	90	69.261	Astatotilapia_calliptera
ENSLBEG00000008452	usb1	78	53.846	ENSAMXG00000040146	usb1	82	53.846	Astyanax_mexicanus
ENSLBEG00000008452	usb1	82	47.755	ENSBTAG00000015758	USB1	75	53.266	Bos_taurus
ENSLBEG00000008452	usb1	64	53.684	ENSCJAG00000011733	USB1	87	48.485	Callithrix_jacchus
ENSLBEG00000008452	usb1	64	51.053	ENSCAFG00000008556	USB1	53	50.505	Canis_familiaris
ENSLBEG00000008452	usb1	70	48.077	ENSCAFG00020009263	USB1	78	48.077	Canis_lupus_dingo
ENSLBEG00000008452	usb1	82	47.347	ENSCHIG00000024290	USB1	87	48.052	Capra_hircus
ENSLBEG00000008452	usb1	64	51.579	ENSTSYG00000006997	USB1	75	51.256	Carlito_syrichta
ENSLBEG00000008452	usb1	65	42.784	ENSCAPG00000009057	USB1	85	42.365	Cavia_aperea
ENSLBEG00000008452	usb1	65	54.124	ENSCPOG00000014325	USB1	75	53.202	Cavia_porcellus
ENSLBEG00000008452	usb1	64	53.158	ENSCCAG00000022132	USB1	75	52.261	Cebus_capucinus
ENSLBEG00000008452	usb1	64	53.158	ENSCATG00000032174	USB1	75	52.261	Cercocebus_atys
ENSLBEG00000008452	usb1	64	52.632	ENSCSAG00000004783	USB1	75	51.759	Chlorocebus_sabaeus
ENSLBEG00000008452	usb1	69	50.228	ENSCPBG00000026943	USB1	79	51.364	Chrysemys_picta_bellii
ENSLBEG00000008452	usb1	80	31.250	ENSCING00000011490	-	73	31.122	Ciona_intestinalis
ENSLBEG00000008452	usb1	64	53.158	ENSCANG00000037135	USB1	75	52.261	Colobus_angolensis_palliatus
ENSLBEG00000008452	usb1	82	46.311	ENSCGRG00001011243	USB1	74	51.515	Cricetulus_griseus_chok1gshd
ENSLBEG00000008452	usb1	82	46.311	ENSCGRG00000013252	USB1	74	51.515	Cricetulus_griseus_crigri
ENSLBEG00000008452	usb1	83	62.140	ENSCSEG00000013881	usb1	81	65.198	Cynoglossus_semilaevis
ENSLBEG00000008452	usb1	68	70.136	ENSCVAG00000009252	usb1	95	70.136	Cyprinodon_variegatus
ENSLBEG00000008452	usb1	66	56.938	ENSDARG00000003841	usb1	95	51.493	Danio_rerio
ENSLBEG00000008452	usb1	64	51.579	ENSDORG00000001888	Usb1	75	51.010	Dipodomys_ordii
ENSLBEG00000008452	usb1	66	40.887	FBgn0037713	CG16790	88	37.083	Drosophila_melanogaster
ENSLBEG00000008452	usb1	55	50.000	ENSETEG00000019682	USB1	61	50.000	Echinops_telfairi
ENSLBEG00000008452	usb1	80	42.979	ENSEBUG00000005889	usb1	86	42.339	Eptatretus_burgeri
ENSLBEG00000008452	usb1	64	52.632	ENSEASG00005005484	USB1	75	52.020	Equus_asinus_asinus
ENSLBEG00000008452	usb1	71	48.246	ENSECAG00000019493	USB1	79	48.246	Equus_caballus
ENSLBEG00000008452	usb1	75	60.996	ENSELUG00000010974	usb1	87	60.996	Esox_lucius
ENSLBEG00000008452	usb1	64	52.632	ENSFCAG00000002693	USB1	74	52.020	Felis_catus
ENSLBEG00000008452	usb1	65	51.707	ENSFALG00000006876	USB1	86	48.707	Ficedula_albicollis
ENSLBEG00000008452	usb1	82	46.721	ENSFDAG00000010052	USB1	75	51.244	Fukomys_damarensis
ENSLBEG00000008452	usb1	83	62.500	ENSFHEG00000012334	usb1	98	63.200	Fundulus_heteroclitus
ENSLBEG00000008452	usb1	68	68.056	ENSGMOG00000004228	usb1	97	68.056	Gadus_morhua
ENSLBEG00000008452	usb1	64	54.974	ENSGALG00000035604	USB1	78	54.726	Gallus_gallus
ENSLBEG00000008452	usb1	86	64.706	ENSGAFG00000021890	usb1	87	68.313	Gambusia_affinis
ENSLBEG00000008452	usb1	78	71.084	ENSGACG00000003257	usb1	92	68.992	Gasterosteus_aculeatus
ENSLBEG00000008452	usb1	85	45.556	ENSGAGG00000022572	USB1	80	51.364	Gopherus_agassizii
ENSLBEG00000008452	usb1	64	53.158	ENSGGOG00000017147	USB1	75	52.261	Gorilla_gorilla
ENSLBEG00000008452	usb1	79	70.916	ENSHBUG00000009823	usb1	91	69.650	Haplochromis_burtoni
ENSLBEG00000008452	usb1	88	43.617	ENSHGLG00000016078	USB1	84	47.807	Heterocephalus_glaber_female
ENSLBEG00000008452	usb1	88	43.617	ENSHGLG00100005562	USB1	84	47.807	Heterocephalus_glaber_male
ENSLBEG00000008452	usb1	65	68.966	ENSHCOG00000015633	usb1	92	63.291	Hippocampus_comes
ENSLBEG00000008452	usb1	84	51.282	ENSIPUG00000008601	usb1	84	53.112	Ictalurus_punctatus
ENSLBEG00000008452	usb1	64	53.684	ENSSTOG00000007548	USB1	73	52.525	Ictidomys_tridecemlineatus
ENSLBEG00000008452	usb1	82	47.951	ENSJJAG00000021859	Usb1	74	53.030	Jaculus_jaculus
ENSLBEG00000008452	usb1	74	71.064	ENSKMAG00000007200	usb1	82	71.064	Kryptolebias_marmoratus
ENSLBEG00000008452	usb1	73	49.083	ENSLACG00000000105	USB1	75	50.000	Latimeria_chalumnae
ENSLBEG00000008452	usb1	85	47.059	ENSLOCG00000000465	usb1	82	49.398	Lepisosteus_oculatus
ENSLBEG00000008452	usb1	80	39.506	ENSLAFG00000002267	USB1	73	43.902	Loxodonta_africana
ENSLBEG00000008452	usb1	64	53.158	ENSMFAG00000003926	USB1	75	52.261	Macaca_fascicularis
ENSLBEG00000008452	usb1	64	53.158	ENSMMUG00000022669	USB1	75	52.261	Macaca_mulatta
ENSLBEG00000008452	usb1	64	53.158	ENSMNEG00000042487	USB1	75	52.261	Macaca_nemestrina
ENSLBEG00000008452	usb1	64	53.158	ENSMLEG00000028756	USB1	75	52.261	Mandrillus_leucophaeus
ENSLBEG00000008452	usb1	86	68.613	ENSMAMG00000015092	usb1	97	68.613	Mastacembelus_armatus
ENSLBEG00000008452	usb1	79	70.518	ENSMZEG00005010008	usb1	91	69.261	Maylandia_zebra
ENSLBEG00000008452	usb1	82	45.679	ENSMAUG00000007832	Usb1	74	52.525	Mesocricetus_auratus
ENSLBEG00000008452	usb1	64	52.632	ENSMICG00000004900	USB1	75	51.759	Microcebus_murinus
ENSLBEG00000008452	usb1	82	46.091	ENSMOCG00000022647	Usb1	75	52.764	Microtus_ochrogaster
ENSLBEG00000008452	usb1	86	63.469	ENSMMOG00000000490	usb1	95	66.122	Mola_mola
ENSLBEG00000008452	usb1	62	53.005	ENSMODG00000014067	USB1	86	48.052	Monodelphis_domestica
ENSLBEG00000008452	usb1	79	68.110	ENSMALG00000005930	usb1	90	67.054	Monopterus_albus
ENSLBEG00000008452	usb1	64	54.737	MGP_CAROLIEiJ_G0031421	Usb1	99	49.107	Mus_caroli
ENSLBEG00000008452	usb1	64	54.211	ENSMUSG00000031792	Usb1	99	49.107	Mus_musculus
ENSLBEG00000008452	usb1	64	55.263	MGP_PahariEiJ_G0023019	Usb1	100	50.427	Mus_pahari
ENSLBEG00000008452	usb1	64	55.263	MGP_SPRETEiJ_G0032540	Usb1	74	54.545	Mus_spretus
ENSLBEG00000008452	usb1	64	52.356	ENSMPUG00000004684	USB1	71	51.759	Mustela_putorius_furo
ENSLBEG00000008452	usb1	64	54.211	ENSMLUG00000007400	USB1	86	53.266	Myotis_lucifugus
ENSLBEG00000008452	usb1	64	54.211	ENSNGAG00000009703	Usb1	76	52.683	Nannospalax_galili
ENSLBEG00000008452	usb1	79	63.636	ENSNBRG00000008747	usb1	97	69.565	Neolamprologus_brichardi
ENSLBEG00000008452	usb1	64	53.158	ENSNLEG00000003340	USB1	80	52.261	Nomascus_leucogenys
ENSLBEG00000008452	usb1	82	47.154	ENSODEG00000016214	USB1	74	53.500	Octodon_degus
ENSLBEG00000008452	usb1	86	68.364	ENSONIG00000011063	usb1	89	70.916	Oreochromis_niloticus
ENSLBEG00000008452	usb1	64	52.332	ENSOANG00000012118	USB1	83	51.244	Ornithorhynchus_anatinus
ENSLBEG00000008452	usb1	79	67.194	ENSORLG00000012479	usb1	95	65.267	Oryzias_latipes
ENSLBEG00000008452	usb1	76	67.769	ENSORLG00020018671	usb1	88	67.769	Oryzias_latipes_hni
ENSLBEG00000008452	usb1	76	69.008	ENSORLG00015009679	usb1	97	66.790	Oryzias_latipes_hsok
ENSLBEG00000008452	usb1	76	70.248	ENSOMEG00000012930	usb1	87	70.248	Oryzias_melastigma
ENSLBEG00000008452	usb1	64	48.947	ENSOGAG00000003273	USB1	86	44.589	Otolemur_garnettii
ENSLBEG00000008452	usb1	64	53.927	ENSOARG00000001107	USB1	76	53.266	Ovis_aries
ENSLBEG00000008452	usb1	64	52.632	ENSPPAG00000042137	USB1	75	51.759	Pan_paniscus
ENSLBEG00000008452	usb1	64	52.105	ENSPPRG00000024797	USB1	74	51.515	Panthera_pardus
ENSLBEG00000008452	usb1	64	51.579	ENSPTIG00000007506	USB1	74	51.010	Panthera_tigris_altaica
ENSLBEG00000008452	usb1	61	53.889	ENSPTRG00000008172	USB1	88	52.910	Pan_troglodytes
ENSLBEG00000008452	usb1	64	53.158	ENSPANG00000025138	USB1	75	52.261	Papio_anubis
ENSLBEG00000008452	usb1	66	59.903	ENSPKIG00000015109	usb1	69	59.903	Paramormyrops_kingsleyae
ENSLBEG00000008452	usb1	65	41.284	ENSPSIG00000004305	USB1	90	41.284	Pelodiscus_sinensis
ENSLBEG00000008452	usb1	68	65.438	ENSPMGG00000017725	usb1	95	60.163	Periophthalmus_magnuspinnatus
ENSLBEG00000008452	usb1	64	53.158	ENSPEMG00000016183	Usb1	73	52.525	Peromyscus_maniculatus_bairdii
ENSLBEG00000008452	usb1	65	49.741	ENSPMAG00000000462	usb1	86	49.261	Petromyzon_marinus
ENSLBEG00000008452	usb1	86	66.182	ENSPFOG00000011130	usb1	89	68.000	Poecilia_formosa
ENSLBEG00000008452	usb1	86	65.818	ENSPLAG00000009820	usb1	89	67.600	Poecilia_latipinna
ENSLBEG00000008452	usb1	86	65.818	ENSPMEG00000006402	usb1	89	67.600	Poecilia_mexicana
ENSLBEG00000008452	usb1	83	65.587	ENSPREG00000001047	usb1	89	68.018	Poecilia_reticulata
ENSLBEG00000008452	usb1	65	48.705	ENSPPYG00000007401	USB1	79	48.500	Pongo_abelii
ENSLBEG00000008452	usb1	64	52.105	ENSPCOG00000022612	USB1	75	51.256	Propithecus_coquereli
ENSLBEG00000008452	usb1	65	49.756	ENSPVAG00000004613	USB1	79	49.756	Pteropus_vampyrus
ENSLBEG00000008452	usb1	81	69.380	ENSPNYG00000022262	usb1	91	69.261	Pundamilia_nyererei
ENSLBEG00000008452	usb1	70	58.296	ENSPNAG00000011736	usb1	76	58.296	Pygocentrus_nattereri
ENSLBEG00000008452	usb1	64	54.737	ENSRNOG00000013216	Usb1	74	54.040	Rattus_norvegicus
ENSLBEG00000008452	usb1	61	53.889	ENSRBIG00000044466	USB1	88	52.910	Rhinopithecus_bieti
ENSLBEG00000008452	usb1	64	53.158	ENSRROG00000029211	USB1	75	52.261	Rhinopithecus_roxellana
ENSLBEG00000008452	usb1	64	53.684	ENSSBOG00000029362	USB1	75	52.764	Saimiri_boliviensis_boliviensis
ENSLBEG00000008452	usb1	63	49.189	ENSSHAG00000006993	USB1	78	48.990	Sarcophilus_harrisii
ENSLBEG00000008452	usb1	67	63.636	ENSSFOG00015023663	usb1	66	63.636	Scleropages_formosus
ENSLBEG00000008452	usb1	81	64.835	ENSSMAG00000015834	usb1	91	65.074	Scophthalmus_maximus
ENSLBEG00000008452	usb1	68	77.880	ENSSDUG00000002949	usb1	81	77.880	Seriola_dumerili
ENSLBEG00000008452	usb1	78	74.699	ENSSLDG00000014174	usb1	88	74.699	Seriola_lalandi_dorsalis
ENSLBEG00000008452	usb1	61	51.111	ENSSPUG00000006741	USB1	91	49.231	Sphenodon_punctatus
ENSLBEG00000008452	usb1	86	64.643	ENSSPAG00000007484	usb1	91	66.667	Stegastes_partitus
ENSLBEG00000008452	usb1	65	55.155	ENSSSCG00000002807	USB1	77	53.110	Sus_scrofa
ENSLBEG00000008452	usb1	60	53.933	ENSTGUG00000004792	USB1	76	53.846	Taeniopygia_guttata
ENSLBEG00000008452	usb1	84	66.412	ENSTRUG00000021069	usb1	91	66.667	Takifugu_rubripes
ENSLBEG00000008452	usb1	84	56.274	ENSTNIG00000000626	usb1	90	58.264	Tetraodon_nigroviridis
ENSLBEG00000008452	usb1	64	37.368	ENSTBEG00000001507	USB1	85	37.374	Tupaia_belangeri
ENSLBEG00000008452	usb1	64	53.927	ENSUAMG00000016823	USB1	74	53.266	Ursus_americanus
ENSLBEG00000008452	usb1	61	54.144	ENSUMAG00000021369	USB1	88	53.439	Ursus_maritimus
ENSLBEG00000008452	usb1	70	48.558	ENSVVUG00000023700	USB1	80	48.558	Vulpes_vulpes
ENSLBEG00000008452	usb1	66	50.467	ENSXETG00000013795	usb1	87	49.772	Xenopus_tropicalis
ENSLBEG00000008452	usb1	78	67.600	ENSXMAG00000024687	usb1	73	67.600	Xiphophorus_maculatus