EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000009390 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 16733 bases
Position: chrFKLU01000345.1:115757-132489
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000012307	ResIII	PF04851.15	2.7e-05	1	1
ENSLBEP00000012333	ResIII	PF04851.15	3.8e-05	1	1
ENSLBEP00000012292	ResIII	PF04851.15	4.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000012943	-	1050	-	ENSLBEP00000012307	349 (aa)	-	-
ENSLBET00000012969	-	783	-	ENSLBEP00000012333	260 (aa)	-	-
ENSLBET00000012927	-	1860	-	ENSLBEP00000012292	619 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000009390's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000009390's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000009390	-	90	42.041	ENSLBEG00000008088	smarcad1a	50	38.202
ENSLBEG00000009390	-	85	31.832	ENSLBEG00000000091	ercc6l	50	32.961
ENSLBEG00000009390	-	92	39.600	ENSLBEG00000027807	hells	66	38.910
ENSLBEG00000009390	-	92	39.344	ENSLBEG00000023845	chd1l	51	39.540
ENSLBEG00000009390	-	92	48.163	ENSLBEG00000013295	SMARCA1	51	41.818

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000009390	-	95	95.686	ENSACIG00000012023	-	96	91.667	Amphilophus_citrinellus
ENSLBEG00000009390	-	94	97.211	ENSCVAG00000012049	-	85	92.023	Cyprinodon_variegatus
ENSLBEG00000009390	-	95	96.471	ENSMAMG00000007069	srcap	96	89.385	Mastacembelus_armatus
ENSLBEG00000009390	-	95	90.588	ENSXETG00000034041	-	99	92.620	Xenopus_tropicalis
ENSLBEG00000009390	-	95	96.863	ENSXCOG00000003602	srcap	50	76.549	Xiphophorus_couchianus