EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000010248 (Gene tree)
Gene ID: 109996444
Gene Symbol: apex1
Alias: hm:zehn1532|wu:fc13d11|zap1|zgc:66204
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 5577 bases
Position: chrFKLU01000366.1:131836-137412
Accession: 109996444
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000013317	Exo_endo_phos	PF03372.23	5.9e-20	1	1
ENSLBEP00000013326	Exo_endo_phos	PF03372.23	6e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000014018	-	936	-	ENSLBEP00000013317	311 (aa)	-	-
ENSLBET00000014027	-	1508	XM_020650568	ENSLBEP00000013326	310 (aa)	XP_020506224	UPI0009B4B236

Gene Model

Click here to download ENSLBEG00000010248's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000010248's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000010248	apex1	99	64.217	ENSG00000100823	APEX1	88	68.459	Homo_sapiens
ENSLBEG00000010248	apex1	100	87.419	ENSAPOG00000017002	apex1	100	87.419	Acanthochromis_polyacanthus
ENSLBEG00000010248	apex1	99	63.898	ENSAMEG00000005418	APEX1	88	67.742	Ailuropoda_melanoleuca
ENSLBEG00000010248	apex1	89	90.614	ENSACIG00000010653	apex1	95	90.714	Amphilophus_citrinellus
ENSLBEG00000010248	apex1	100	89.032	ENSAOCG00000009649	apex1	100	89.032	Amphiprion_ocellaris
ENSLBEG00000010248	apex1	100	89.355	ENSAPEG00000021453	apex1	100	89.355	Amphiprion_percula
ENSLBEG00000010248	apex1	99	92.233	ENSATEG00000002883	apex1	97	92.233	Anabas_testudineus
ENSLBEG00000010248	apex1	90	71.786	ENSACAG00000008099	APEX1	88	71.786	Anolis_carolinensis
ENSLBEG00000010248	apex1	99	64.537	ENSANAG00000030117	APEX1	88	68.817	Aotus_nancymaae
ENSLBEG00000010248	apex1	100	89.355	ENSACLG00000018441	apex1	100	89.355	Astatotilapia_calliptera
ENSLBEG00000010248	apex1	99	84.839	ENSAMXG00000034699	apex1	99	84.516	Astyanax_mexicanus
ENSLBEG00000010248	apex1	99	62.975	ENSBTAG00000002745	APEX1	88	67.025	Bos_taurus
ENSLBEG00000010248	apex1	91	45.455	WBGene00001372	exo-3	92	46.442	Caenorhabditis_elegans
ENSLBEG00000010248	apex1	99	64.537	ENSCJAG00000009726	APEX1	88	68.817	Callithrix_jacchus
ENSLBEG00000010248	apex1	99	64.669	ENSCAFG00000032033	APEX1	99	64.669	Canis_familiaris
ENSLBEG00000010248	apex1	99	64.669	ENSCAFG00020014377	-	99	64.669	Canis_lupus_dingo
ENSLBEG00000010248	apex1	53	59.649	ENSCAFG00020023002	-	94	59.649	Canis_lupus_dingo
ENSLBEG00000010248	apex1	99	62.975	ENSCHIG00000007298	-	88	67.025	Capra_hircus
ENSLBEG00000010248	apex1	89	53.957	ENSCHIG00000014537	-	89	52.518	Capra_hircus
ENSLBEG00000010248	apex1	99	63.091	ENSTSYG00000034813	APEX1	88	67.025	Carlito_syrichta
ENSLBEG00000010248	apex1	93	60.690	ENSCAPG00000016235	APEX1	91	68.220	Cavia_aperea
ENSLBEG00000010248	apex1	99	64.984	ENSCPOG00000030909	APEX1	88	69.176	Cavia_porcellus
ENSLBEG00000010248	apex1	99	64.537	ENSCCAG00000033056	-	88	68.817	Cebus_capucinus
ENSLBEG00000010248	apex1	90	58.781	ENSCCAG00000031931	-	87	58.781	Cebus_capucinus
ENSLBEG00000010248	apex1	99	63.898	ENSCATG00000015580	APEX1	88	68.100	Cercocebus_atys
ENSLBEG00000010248	apex1	99	64.984	ENSCLAG00000001002	APEX1	88	68.459	Chinchilla_lanigera
ENSLBEG00000010248	apex1	99	64.217	ENSCSAG00000016670	-	88	68.459	Chlorocebus_sabaeus
ENSLBEG00000010248	apex1	99	64.217	ENSCSAG00000016685	-	88	68.459	Chlorocebus_sabaeus
ENSLBEG00000010248	apex1	99	70.253	ENSCPBG00000009567	APEX1	99	70.253	Chrysemys_picta_bellii
ENSLBEG00000010248	apex1	99	54.397	ENSCING00000008137	-	85	59.925	Ciona_intestinalis
ENSLBEG00000010248	apex1	96	49.013	ENSCSAVG00000007144	-	100	54.651	Ciona_savignyi
ENSLBEG00000010248	apex1	99	64.537	ENSCANG00000030726	APEX1	98	64.537	Colobus_angolensis_palliatus
ENSLBEG00000010248	apex1	99	64.038	ENSCGRG00001017046	Apex1	99	64.038	Cricetulus_griseus_chok1gshd
ENSLBEG00000010248	apex1	99	64.038	ENSCGRG00000008984	Apex1	99	64.038	Cricetulus_griseus_crigri
ENSLBEG00000010248	apex1	100	85.161	ENSCSEG00000017499	apex1	99	85.161	Cynoglossus_semilaevis
ENSLBEG00000010248	apex1	100	89.032	ENSCVAG00000022075	apex1	100	89.032	Cyprinodon_variegatus
ENSLBEG00000010248	apex1	99	83.172	ENSDARG00000045843	apex1	99	83.172	Danio_rerio
ENSLBEG00000010248	apex1	99	60.568	ENSDNOG00000042234	APEX1	83	64.516	Dasypus_novemcinctus
ENSLBEG00000010248	apex1	99	63.722	ENSDORG00000001616	Apex1	88	67.742	Dipodomys_ordii
ENSLBEG00000010248	apex1	99	64.669	ENSETEG00000004855	-	88	68.459	Echinops_telfairi
ENSLBEG00000010248	apex1	76	59.244	ENSEBUG00000000622	-	92	59.244	Eptatretus_burgeri
ENSLBEG00000010248	apex1	99	64.353	ENSEASG00005017489	APEX1	65	68.459	Equus_asinus_asinus
ENSLBEG00000010248	apex1	99	64.353	ENSECAG00000022325	APEX1	72	68.459	Equus_caballus
ENSLBEG00000010248	apex1	86	67.658	ENSEEUG00000012569	APEX1	93	67.658	Erinaceus_europaeus
ENSLBEG00000010248	apex1	99	82.524	ENSELUG00000021706	apex1	99	83.871	Esox_lucius
ENSLBEG00000010248	apex1	99	63.608	ENSFCAG00000030869	APEX1	88	68.459	Felis_catus
ENSLBEG00000010248	apex1	99	65.300	ENSFDAG00000006120	APEX1	88	68.817	Fukomys_damarensis
ENSLBEG00000010248	apex1	100	89.355	ENSFHEG00000009031	apex1	83	89.355	Fundulus_heteroclitus
ENSLBEG00000010248	apex1	100	78.710	ENSGMOG00000007943	apex1	99	78.710	Gadus_morhua
ENSLBEG00000010248	apex1	100	88.387	ENSGAFG00000005311	apex1	100	88.387	Gambusia_affinis
ENSLBEG00000010248	apex1	100	90.000	ENSGACG00000019497	apex1	99	90.226	Gasterosteus_aculeatus
ENSLBEG00000010248	apex1	99	69.937	ENSGAGG00000014999	APEX1	99	69.937	Gopherus_agassizii
ENSLBEG00000010248	apex1	99	63.898	ENSGGOG00000002128	APEX1	88	68.100	Gorilla_gorilla
ENSLBEG00000010248	apex1	100	89.032	ENSHBUG00000005894	apex1	100	89.032	Haplochromis_burtoni
ENSLBEG00000010248	apex1	99	65.300	ENSHGLG00000002848	APEX1	88	68.459	Heterocephalus_glaber_female
ENSLBEG00000010248	apex1	99	65.300	ENSHGLG00100017878	APEX1	88	68.459	Heterocephalus_glaber_male
ENSLBEG00000010248	apex1	100	85.531	ENSHCOG00000009961	apex1	100	85.531	Hippocampus_comes
ENSLBEG00000010248	apex1	99	81.877	ENSIPUG00000005799	apex1	99	81.877	Ictalurus_punctatus
ENSLBEG00000010248	apex1	99	64.856	ENSSTOG00000010096	APEX1	88	69.176	Ictidomys_tridecemlineatus
ENSLBEG00000010248	apex1	90	59.857	ENSJJAG00000020465	-	90	59.857	Jaculus_jaculus
ENSLBEG00000010248	apex1	99	63.898	ENSJJAG00000012067	-	88	67.384	Jaculus_jaculus
ENSLBEG00000010248	apex1	99	56.962	ENSJJAG00000003660	-	99	56.329	Jaculus_jaculus
ENSLBEG00000010248	apex1	100	87.097	ENSKMAG00000021171	apex1	100	87.097	Kryptolebias_marmoratus
ENSLBEG00000010248	apex1	99	72.115	ENSLACG00000008617	APEX1	89	76.429	Latimeria_chalumnae
ENSLBEG00000010248	apex1	99	77.316	ENSLOCG00000015516	apex1	99	76.358	Lepisosteus_oculatus
ENSLBEG00000010248	apex1	90	69.176	ENSLAFG00000021872	APEX1	88	69.176	Loxodonta_africana
ENSLBEG00000010248	apex1	99	63.898	ENSMFAG00000002565	APEX1	88	68.100	Macaca_fascicularis
ENSLBEG00000010248	apex1	99	63.898	ENSMMUG00000048039	APEX1	88	68.100	Macaca_mulatta
ENSLBEG00000010248	apex1	99	64.013	ENSMNEG00000036944	APEX1	88	68.100	Macaca_nemestrina
ENSLBEG00000010248	apex1	99	63.898	ENSMLEG00000042125	APEX1	88	68.100	Mandrillus_leucophaeus
ENSLBEG00000010248	apex1	100	90.323	ENSMAMG00000023526	apex1	100	90.323	Mastacembelus_armatus
ENSLBEG00000010248	apex1	100	89.355	ENSMZEG00005014187	apex1	100	89.355	Maylandia_zebra
ENSLBEG00000010248	apex1	99	63.608	ENSMAUG00000013994	Apex1	88	67.384	Mesocricetus_auratus
ENSLBEG00000010248	apex1	99	62.975	ENSMICG00000043554	APEX1	99	62.975	Microcebus_murinus
ENSLBEG00000010248	apex1	99	64.984	ENSMOCG00000013721	Apex1	99	64.984	Microtus_ochrogaster
ENSLBEG00000010248	apex1	100	85.209	ENSMMOG00000010031	apex1	97	85.209	Mola_mola
ENSLBEG00000010248	apex1	91	66.784	ENSMODG00000007125	APEX1	87	67.384	Monodelphis_domestica
ENSLBEG00000010248	apex1	90	83.214	ENSMALG00000011699	apex1	75	83.214	Monopterus_albus
ENSLBEG00000010248	apex1	99	64.968	MGP_CAROLIEiJ_G0019209	Apex1	99	64.968	Mus_caroli
ENSLBEG00000010248	apex1	99	64.444	ENSMUSG00000035960	Apex1	99	64.444	Mus_musculus
ENSLBEG00000010248	apex1	99	64.127	MGP_PahariEiJ_G0030232	Apex1	99	64.127	Mus_pahari
ENSLBEG00000010248	apex1	99	64.444	MGP_SPRETEiJ_G0020101	Apex1	99	64.444	Mus_spretus
ENSLBEG00000010248	apex1	99	62.857	ENSMLUG00000028957	APEX1	87	67.384	Myotis_lucifugus
ENSLBEG00000010248	apex1	99	64.669	ENSNGAG00000002725	-	88	67.742	Nannospalax_galili
ENSLBEG00000010248	apex1	87	51.661	ENSNGAG00000021748	-	72	55.833	Nannospalax_galili
ENSLBEG00000010248	apex1	100	89.032	ENSNBRG00000005334	apex1	91	89.032	Neolamprologus_brichardi
ENSLBEG00000010248	apex1	99	63.898	ENSNLEG00000010839	APEX1	89	68.100	Nomascus_leucogenys
ENSLBEG00000010248	apex1	99	63.898	ENSMEUG00000014519	APEX1	89	67.025	Notamacropus_eugenii
ENSLBEG00000010248	apex1	99	64.241	ENSOPRG00000014029	APEX1	99	64.241	Ochotona_princeps
ENSLBEG00000010248	apex1	95	49.832	ENSODEG00000004777	-	83	55.731	Octodon_degus
ENSLBEG00000010248	apex1	99	64.353	ENSODEG00000001703	-	88	68.459	Octodon_degus
ENSLBEG00000010248	apex1	99	51.097	ENSODEG00000006583	-	87	52.632	Octodon_degus
ENSLBEG00000010248	apex1	100	89.032	ENSONIG00000012089	apex1	100	89.032	Oreochromis_niloticus
ENSLBEG00000010248	apex1	92	67.719	ENSOANG00000008836	APEX1	68	69.091	Ornithorhynchus_anatinus
ENSLBEG00000010248	apex1	99	64.537	ENSOCUG00000005022	APEX1	98	64.537	Oryctolagus_cuniculus
ENSLBEG00000010248	apex1	100	90.354	ENSORLG00000012378	apex1	100	90.354	Oryzias_latipes
ENSLBEG00000010248	apex1	100	90.354	ENSORLG00020021371	apex1	100	90.354	Oryzias_latipes_hni
ENSLBEG00000010248	apex1	100	90.354	ENSORLG00015020089	apex1	100	90.354	Oryzias_latipes_hsok
ENSLBEG00000010248	apex1	100	90.032	ENSOMEG00000018876	apex1	100	90.032	Oryzias_melastigma
ENSLBEG00000010248	apex1	99	64.241	ENSOGAG00000013335	-	99	64.241	Otolemur_garnettii
ENSLBEG00000010248	apex1	99	57.143	ENSOGAG00000029355	-	89	60.573	Otolemur_garnettii
ENSLBEG00000010248	apex1	96	55.298	ENSOARG00000014424	-	89	56.631	Ovis_aries
ENSLBEG00000010248	apex1	99	62.975	ENSOARG00000019740	-	88	67.025	Ovis_aries
ENSLBEG00000010248	apex1	96	60.131	ENSOARG00000001876	-	87	63.941	Ovis_aries
ENSLBEG00000010248	apex1	99	64.217	ENSPPAG00000038760	APEX1	89	68.459	Pan_paniscus
ENSLBEG00000010248	apex1	99	63.608	ENSPPRG00000011794	APEX1	88	68.459	Panthera_pardus
ENSLBEG00000010248	apex1	99	63.608	ENSPTIG00000014829	APEX1	88	68.459	Panthera_tigris_altaica
ENSLBEG00000010248	apex1	99	64.217	ENSPTRG00000006093	APEX1	89	68.459	Pan_troglodytes
ENSLBEG00000010248	apex1	99	63.898	ENSPANG00000022757	APEX1	88	68.100	Papio_anubis
ENSLBEG00000010248	apex1	95	85.034	ENSPKIG00000003504	apex1	99	83.654	Paramormyrops_kingsleyae
ENSLBEG00000010248	apex1	86	76.208	ENSPMGG00000016596	apex1	79	76.208	Periophthalmus_magnuspinnatus
ENSLBEG00000010248	apex1	99	63.810	ENSPEMG00000019097	Apex1	99	63.810	Peromyscus_maniculatus_bairdii
ENSLBEG00000010248	apex1	93	71.134	ENSPMAG00000007275	-	95	72.043	Petromyzon_marinus
ENSLBEG00000010248	apex1	90	67.025	ENSPCIG00000023274	APEX1	87	67.025	Phascolarctos_cinereus
ENSLBEG00000010248	apex1	100	89.355	ENSPFOG00000004178	apex1	100	89.355	Poecilia_formosa
ENSLBEG00000010248	apex1	100	89.032	ENSPLAG00000012779	apex1	100	89.032	Poecilia_latipinna
ENSLBEG00000010248	apex1	100	89.355	ENSPMEG00000019623	apex1	100	89.355	Poecilia_mexicana
ENSLBEG00000010248	apex1	100	89.032	ENSPREG00000014298	apex1	99	89.032	Poecilia_reticulata
ENSLBEG00000010248	apex1	99	63.898	ENSPPYG00000005565	APEX1	88	68.100	Pongo_abelii
ENSLBEG00000010248	apex1	99	62.025	ENSPCAG00000010376	APEX1	88	67.025	Procavia_capensis
ENSLBEG00000010248	apex1	99	63.291	ENSPCOG00000021564	APEX1	99	63.291	Propithecus_coquereli
ENSLBEG00000010248	apex1	99	63.175	ENSPVAG00000010736	APEX1	87	68.100	Pteropus_vampyrus
ENSLBEG00000010248	apex1	100	89.355	ENSPNYG00000023940	apex1	100	89.355	Pundamilia_nyererei
ENSLBEG00000010248	apex1	92	84.266	ENSPNAG00000020897	apex1	93	85.145	Pygocentrus_nattereri
ENSLBEG00000010248	apex1	99	64.127	ENSRNOG00000009663	Apex1	99	64.127	Rattus_norvegicus
ENSLBEG00000010248	apex1	99	64.217	ENSRBIG00000038325	APEX1	87	68.459	Rhinopithecus_bieti
ENSLBEG00000010248	apex1	90	68.817	ENSSBOG00000018921	-	88	68.817	Saimiri_boliviensis_boliviensis
ENSLBEG00000010248	apex1	99	56.774	ENSSBOG00000031372	-	91	60.215	Saimiri_boliviensis_boliviensis
ENSLBEG00000010248	apex1	100	61.465	ENSSHAG00000013524	APEX1	97	61.465	Sarcophilus_harrisii
ENSLBEG00000010248	apex1	99	78.065	ENSSFOG00015001948	apex1	99	80.645	Scleropages_formosus
ENSLBEG00000010248	apex1	100	88.254	ENSSMAG00000013348	apex1	100	88.889	Scophthalmus_maximus
ENSLBEG00000010248	apex1	100	90.323	ENSSDUG00000016377	apex1	99	90.323	Seriola_dumerili
ENSLBEG00000010248	apex1	100	89.677	ENSSLDG00000023005	apex1	100	89.677	Seriola_lalandi_dorsalis
ENSLBEG00000010248	apex1	90	73.214	ENSSPUG00000000531	APEX1	94	73.118	Sphenodon_punctatus
ENSLBEG00000010248	apex1	100	88.387	ENSSPAG00000000458	apex1	100	88.387	Stegastes_partitus
ENSLBEG00000010248	apex1	99	64.353	ENSSSCG00000040060	-	88	67.742	Sus_scrofa
ENSLBEG00000010248	apex1	96	38.361	ENSSSCG00000039705	-	89	40.794	Sus_scrofa
ENSLBEG00000010248	apex1	76	56.596	ENSTGUG00000014378	APEX1	100	56.596	Taeniopygia_guttata
ENSLBEG00000010248	apex1	100	84.984	ENSTRUG00000004268	apex1	95	86.262	Takifugu_rubripes
ENSLBEG00000010248	apex1	100	86.129	ENSTNIG00000005778	apex1	100	86.129	Tetraodon_nigroviridis
ENSLBEG00000010248	apex1	99	61.076	ENSTBEG00000006405	APEX1	88	65.591	Tupaia_belangeri
ENSLBEG00000010248	apex1	76	66.383	ENSTTRG00000007860	APEX1	100	66.383	Tursiops_truncatus
ENSLBEG00000010248	apex1	99	62.975	ENSUAMG00000010457	APEX1	88	67.742	Ursus_americanus
ENSLBEG00000010248	apex1	99	62.975	ENSUMAG00000009178	APEX1	88	67.742	Ursus_maritimus
ENSLBEG00000010248	apex1	76	63.404	ENSVPAG00000005083	APEX1	100	63.404	Vicugna_pacos
ENSLBEG00000010248	apex1	99	64.353	ENSVVUG00000009010	APEX1	99	64.353	Vulpes_vulpes
ENSLBEG00000010248	apex1	99	67.834	ENSXETG00000024773	apex1	99	67.834	Xenopus_tropicalis
ENSLBEG00000010248	apex1	100	89.032	ENSXCOG00000015233	apex1	99	89.032	Xiphophorus_couchianus
ENSLBEG00000010248	apex1	100	89.032	ENSXMAG00000006195	apex1	100	89.032	Xiphophorus_maculatus