EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000010341 (Gene tree)
Gene ID: 109995412
Gene Symbol: vars
Alias: CHUNP6879|im:7137378|vars2|wu:fb07a11|wu:fb07d10
Full Name: valine--tRNA ligase-like
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 11909 bases
Position: chrFKLU01000324.1:204533-216441
Accession: 109995412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000013568	tRNA-synt_1g	PF09334.11	2.4e-13	1	1
ENSLBEP00000013516	tRNA-synt_1g	PF09334.11	3.2e-13	1	1
ENSLBEP00000013516	Anticodon_1	PF08264.13	5.7e-34	1	1
ENSLBEP00000013568	Anticodon_1	PF08264.13	4.9e-30	1	1
ENSLBEP00000013516	tRNA-synt_1	PF00133.22	1.8e-208	1	1
ENSLBEP00000013568	tRNA-synt_1	PF00133.22	3.4e-207	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000014250	-	4072	XM_020649134	ENSLBEP00000013516	1314 (aa)	XP_020504790	-
ENSLBET00000014309	-	3675	-	ENSLBEP00000013568	1224 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000010341's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000010341's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000010341	vars	78	49.290	ENSLBEG00000011949	vars2	91	49.290

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000010341	vars	100	64.348	ENSG00000204394	VARS	99	72.086	Homo_sapiens
ENSLBEG00000010341	vars	98	87.884	ENSAPOG00000020921	vars	99	88.354	Acanthochromis_polyacanthus
ENSLBEG00000010341	vars	98	87.884	ENSAPOG00000020691	vars	99	88.354	Acanthochromis_polyacanthus
ENSLBEG00000010341	vars	100	64.534	ENSAMEG00000006417	VARS	100	63.823	Ailuropoda_melanoleuca
ENSLBEG00000010341	vars	100	87.959	ENSACIG00000013752	vars	100	92.426	Amphilophus_citrinellus
ENSLBEG00000010341	vars	100	88.907	ENSAOCG00000002447	vars	100	88.907	Amphiprion_ocellaris
ENSLBEG00000010341	vars	100	86.853	ENSAPEG00000010638	vars	99	87.262	Amphiprion_percula
ENSLBEG00000010341	vars	100	88.350	ENSATEG00000020219	vars	100	88.350	Anabas_testudineus
ENSLBEG00000010341	vars	90	69.459	ENSACAG00000029133	-	99	69.965	Anolis_carolinensis
ENSLBEG00000010341	vars	100	64.427	ENSANAG00000015453	VARS	100	63.715	Aotus_nancymaae
ENSLBEG00000010341	vars	99	87.500	ENSACLG00000025699	vars	97	87.500	Astatotilapia_calliptera
ENSLBEG00000010341	vars	94	82.773	ENSAMXG00000017716	vars	95	86.186	Astyanax_mexicanus
ENSLBEG00000010341	vars	100	64.427	ENSBTAG00000005631	VARS	100	63.880	Bos_taurus
ENSLBEG00000010341	vars	100	64.348	ENSCJAG00000002604	VARS	100	64.585	Callithrix_jacchus
ENSLBEG00000010341	vars	100	63.902	ENSCAFG00000000636	VARS	100	63.241	Canis_familiaris
ENSLBEG00000010341	vars	93	65.093	ENSCAFG00020020790	VARS	96	64.388	Canis_lupus_dingo
ENSLBEG00000010341	vars	100	64.427	ENSCHIG00000011008	VARS	100	63.880	Capra_hircus
ENSLBEG00000010341	vars	100	63.953	ENSTSYG00000001567	VARS	100	63.399	Carlito_syrichta
ENSLBEG00000010341	vars	90	67.551	ENSCAPG00000013736	VARS	95	69.538	Cavia_aperea
ENSLBEG00000010341	vars	100	63.428	ENSCPOG00000000870	VARS	97	69.076	Cavia_porcellus
ENSLBEG00000010341	vars	100	64.348	ENSCCAG00000035656	VARS	100	64.585	Cebus_capucinus
ENSLBEG00000010341	vars	100	64.511	ENSCATG00000022394	VARS	100	63.874	Cercocebus_atys
ENSLBEG00000010341	vars	89	66.082	ENSCLAG00000009470	VARS	92	65.290	Chinchilla_lanigera
ENSLBEG00000010341	vars	100	64.427	ENSCSAG00000008784	VARS	100	64.585	Chlorocebus_sabaeus
ENSLBEG00000010341	vars	79	74.359	ENSCPBG00000007943	VARS	96	74.744	Chrysemys_picta_bellii
ENSLBEG00000010341	vars	100	64.585	ENSCANG00000033570	VARS	100	64.822	Colobus_angolensis_palliatus
ENSLBEG00000010341	vars	100	64.771	ENSCGRG00001005686	Vars	100	65.008	Cricetulus_griseus_chok1gshd
ENSLBEG00000010341	vars	93	63.211	ENSCGRG00000013352	Vars	78	63.462	Cricetulus_griseus_crigri
ENSLBEG00000010341	vars	100	83.683	ENSCSEG00000019652	vars	100	86.513	Cynoglossus_semilaevis
ENSLBEG00000010341	vars	99	87.043	ENSCVAG00000022398	vars	100	86.966	Cyprinodon_variegatus
ENSLBEG00000010341	vars	100	80.754	ENSDARG00000044575	vars	100	81.603	Danio_rerio
ENSLBEG00000010341	vars	83	69.431	ENSDORG00000016433	Vars	94	70.265	Dipodomys_ordii
ENSLBEG00000010341	vars	69	74.141	ENSETEG00000003824	VARS	77	74.141	Echinops_telfairi
ENSLBEG00000010341	vars	52	72.696	ENSEBUG00000007086	vars	82	73.137	Eptatretus_burgeri
ENSLBEG00000010341	vars	59	65.295	ENSEBUG00000004637	vars	100	65.663	Eptatretus_burgeri
ENSLBEG00000010341	vars	100	64.585	ENSEASG00005015673	VARS	100	63.874	Equus_asinus_asinus
ENSLBEG00000010341	vars	100	64.613	ENSECAG00000014620	VARS	100	64.850	Equus_caballus
ENSLBEG00000010341	vars	72	71.679	ENSEEUG00000004116	VARS	72	71.930	Erinaceus_europaeus
ENSLBEG00000010341	vars	99	81.963	ENSELUG00000006550	vars	97	81.811	Esox_lucius
ENSLBEG00000010341	vars	100	63.887	ENSFCAG00000004510	VARS	100	63.801	Felis_catus
ENSLBEG00000010341	vars	83	69.929	ENSFDAG00000011401	VARS	100	70.142	Fukomys_damarensis
ENSLBEG00000010341	vars	100	86.434	ENSFHEG00000010672	vars	100	86.434	Fundulus_heteroclitus
ENSLBEG00000010341	vars	99	80.153	ENSGMOG00000014908	vars	100	80.382	Gadus_morhua
ENSLBEG00000010341	vars	100	85.165	ENSGAFG00000021630	vars	100	85.976	Gambusia_affinis
ENSLBEG00000010341	vars	93	87.429	ENSGACG00000009601	vars	100	83.588	Gasterosteus_aculeatus
ENSLBEG00000010341	vars	100	64.585	ENSGGOG00000011364	VARS	100	63.794	Gorilla_gorilla
ENSLBEG00000010341	vars	99	87.576	ENSHBUG00000017151	vars	97	87.576	Haplochromis_burtoni
ENSLBEG00000010341	vars	100	63.478	ENSHGLG00000011646	VARS	100	62.609	Heterocephalus_glaber_female
ENSLBEG00000010341	vars	93	61.577	ENSHGLG00100018062	VARS	99	60.771	Heterocephalus_glaber_male
ENSLBEG00000010341	vars	99	82.137	ENSHCOG00000012198	vars	99	86.313	Hippocampus_comes
ENSLBEG00000010341	vars	100	81.164	ENSIPUG00000005218	vars	100	81.164	Ictalurus_punctatus
ENSLBEG00000010341	vars	100	64.404	ENSSTOG00000013112	VARS	100	64.720	Ictidomys_tridecemlineatus
ENSLBEG00000010341	vars	100	52.313	ENSJJAG00000015343	-	100	56.870	Jaculus_jaculus
ENSLBEG00000010341	vars	100	63.773	ENSJJAG00000019749	-	100	63.953	Jaculus_jaculus
ENSLBEG00000010341	vars	100	86.276	ENSKMAG00000009455	vars	100	86.276	Kryptolebias_marmoratus
ENSLBEG00000010341	vars	73	72.228	ENSLACG00000015232	VARS	99	64.706	Latimeria_chalumnae
ENSLBEG00000010341	vars	100	73.402	ENSLOCG00000004240	vars	100	73.481	Lepisosteus_oculatus
ENSLBEG00000010341	vars	100	63.687	ENSLAFG00000023090	VARS	100	64.003	Loxodonta_africana
ENSLBEG00000010341	vars	100	64.432	ENSMFAG00000001032	VARS	100	63.715	Macaca_fascicularis
ENSLBEG00000010341	vars	100	64.432	ENSMMUG00000006828	VARS	100	63.715	Macaca_mulatta
ENSLBEG00000010341	vars	100	64.432	ENSMNEG00000042072	VARS	100	63.715	Macaca_nemestrina
ENSLBEG00000010341	vars	100	64.511	ENSMLEG00000039307	VARS	100	63.794	Mandrillus_leucophaeus
ENSLBEG00000010341	vars	100	87.918	ENSMAMG00000003949	vars	100	87.918	Mastacembelus_armatus
ENSLBEG00000010341	vars	100	86.829	ENSMZEG00005018327	vars	100	86.829	Maylandia_zebra
ENSLBEG00000010341	vars	100	64.218	ENSMAUG00000006715	Vars	100	64.376	Mesocricetus_auratus
ENSLBEG00000010341	vars	100	64.269	ENSMICG00000003548	VARS	100	64.269	Microcebus_murinus
ENSLBEG00000010341	vars	100	63.442	ENSMOCG00000015404	Vars	100	63.521	Microtus_ochrogaster
ENSLBEG00000010341	vars	100	87.198	ENSMMOG00000015801	vars	100	87.198	Mola_mola
ENSLBEG00000010341	vars	100	64.218	ENSMODG00000015204	-	100	64.455	Monodelphis_domestica
ENSLBEG00000010341	vars	99	87.055	ENSMALG00000022532	vars	99	87.055	Monopterus_albus
ENSLBEG00000010341	vars	100	64.585	MGP_CAROLIEiJ_G0021491	Vars	100	64.743	Mus_caroli
ENSLBEG00000010341	vars	100	64.455	ENSMUSG00000007029	Vars	100	64.692	Mus_musculus
ENSLBEG00000010341	vars	100	64.427	MGP_PahariEiJ_G0020486	Vars	100	64.664	Mus_pahari
ENSLBEG00000010341	vars	100	64.534	MGP_SPRETEiJ_G0022396	Vars	100	64.692	Mus_spretus
ENSLBEG00000010341	vars	100	64.111	ENSMPUG00000010821	VARS	100	63.565	Mustela_putorius_furo
ENSLBEG00000010341	vars	77	66.903	ENSMLUG00000013126	VARS	100	67.409	Myotis_lucifugus
ENSLBEG00000010341	vars	100	64.038	ENSNGAG00000012151	Vars	100	64.455	Nannospalax_galili
ENSLBEG00000010341	vars	100	86.753	ENSNBRG00000020520	vars	100	87.348	Neolamprologus_brichardi
ENSLBEG00000010341	vars	100	64.427	ENSNLEG00000006351	VARS	100	64.664	Nomascus_leucogenys
ENSLBEG00000010341	vars	91	71.844	ENSMEUG00000011378	VARS	96	70.715	Notamacropus_eugenii
ENSLBEG00000010341	vars	100	64.123	ENSOPRG00000003607	VARS	100	64.534	Ochotona_princeps
ENSLBEG00000010341	vars	100	63.133	ENSODEG00000017681	VARS	100	63.362	Octodon_degus
ENSLBEG00000010341	vars	100	86.977	ENSONIG00000013064	vars	100	88.260	Oreochromis_niloticus
ENSLBEG00000010341	vars	76	66.185	ENSOANG00000005400	VARS	98	66.546	Ornithorhynchus_anatinus
ENSLBEG00000010341	vars	92	71.643	ENSOCUG00000022463	VARS	100	63.492	Oryctolagus_cuniculus
ENSLBEG00000010341	vars	99	85.202	ENSORLG00000013063	vars	100	85.278	Oryzias_latipes
ENSLBEG00000010341	vars	99	85.278	ENSORLG00020003504	vars	100	85.126	Oryzias_latipes_hni
ENSLBEG00000010341	vars	99	85.660	ENSORLG00015009001	vars	100	85.660	Oryzias_latipes_hsok
ENSLBEG00000010341	vars	99	85.889	ENSOMEG00000015016	vars	100	85.889	Oryzias_melastigma
ENSLBEG00000010341	vars	100	63.823	ENSOGAG00000007515	VARS	100	63.436	Otolemur_garnettii
ENSLBEG00000010341	vars	100	64.348	ENSPPAG00000034012	VARS	100	64.585	Pan_paniscus
ENSLBEG00000010341	vars	100	63.808	ENSPPRG00000014855	VARS	100	63.722	Panthera_pardus
ENSLBEG00000010341	vars	85	68.186	ENSPTIG00000010462	VARS	93	67.937	Panthera_tigris_altaica
ENSLBEG00000010341	vars	100	64.348	ENSPTRG00000017985	VARS	100	64.585	Pan_troglodytes
ENSLBEG00000010341	vars	100	63.208	ENSPANG00000014565	VARS	100	62.254	Papio_anubis
ENSLBEG00000010341	vars	100	77.456	ENSPKIG00000016304	vars	100	78.337	Paramormyrops_kingsleyae
ENSLBEG00000010341	vars	100	84.597	ENSPMGG00000023909	vars	100	84.597	Periophthalmus_magnuspinnatus
ENSLBEG00000010341	vars	100	64.376	ENSPEMG00000006639	Vars	100	64.534	Peromyscus_maniculatus_bairdii
ENSLBEG00000010341	vars	100	63.715	ENSPCIG00000018553	VARS	100	63.953	Phascolarctos_cinereus
ENSLBEG00000010341	vars	100	85.165	ENSPFOG00000015690	vars	100	85.823	Poecilia_formosa
ENSLBEG00000010341	vars	100	84.929	ENSPLAG00000009590	vars	100	85.595	Poecilia_latipinna
ENSLBEG00000010341	vars	100	85.086	ENSPMEG00000004708	vars	100	85.747	Poecilia_mexicana
ENSLBEG00000010341	vars	100	85.356	ENSPREG00000013264	vars	99	91.881	Poecilia_reticulata
ENSLBEG00000010341	vars	100	63.154	ENSPPYG00000016460	VARS	100	63.312	Pongo_abelii
ENSLBEG00000010341	vars	86	65.187	ENSPCAG00000013565	VARS	86	65.591	Procavia_capensis
ENSLBEG00000010341	vars	100	64.139	ENSPCOG00000010942	VARS	100	64.297	Propithecus_coquereli
ENSLBEG00000010341	vars	100	61.818	ENSPVAG00000012403	VARS	95	69.487	Pteropus_vampyrus
ENSLBEG00000010341	vars	99	87.652	ENSPNYG00000022511	vars	100	87.652	Pundamilia_nyererei
ENSLBEG00000010341	vars	100	80.251	ENSPNAG00000020962	vars	100	84.770	Pygocentrus_nattereri
ENSLBEG00000010341	vars	100	64.376	ENSRNOG00000000867	Vars	100	64.534	Rattus_norvegicus
ENSLBEG00000010341	vars	100	64.506	ENSRBIG00000041669	VARS	100	64.664	Rhinopithecus_bieti
ENSLBEG00000010341	vars	100	64.506	ENSRROG00000045490	VARS	100	64.664	Rhinopithecus_roxellana
ENSLBEG00000010341	vars	100	64.190	ENSSBOG00000035402	VARS	100	64.427	Saimiri_boliviensis_boliviensis
ENSLBEG00000010341	vars	100	63.273	ENSSHAG00000006937	VARS	100	63.594	Sarcophilus_harrisii
ENSLBEG00000010341	vars	93	84.959	ENSSFOG00015014272	vars	98	84.959	Scleropages_formosus
ENSLBEG00000010341	vars	99	85.278	ENSSMAG00000009596	vars	99	85.278	Scophthalmus_maximus
ENSLBEG00000010341	vars	99	88.406	ENSSDUG00000014177	vars	100	88.406	Seriola_dumerili
ENSLBEG00000010341	vars	99	88.024	ENSSLDG00000025316	vars	100	88.024	Seriola_lalandi_dorsalis
ENSLBEG00000010341	vars	100	88.880	ENSSPAG00000017068	vars	100	88.880	Stegastes_partitus
ENSLBEG00000010341	vars	100	64.218	ENSSSCG00000038950	VARS	100	64.455	Sus_scrofa
ENSLBEG00000010341	vars	81	83.466	ENSTRUG00000012307	vars	96	83.433	Takifugu_rubripes
ENSLBEG00000010341	vars	100	83.531	ENSTNIG00000008011	vars	100	83.531	Tetraodon_nigroviridis
ENSLBEG00000010341	vars	100	59.130	ENSTTRG00000014128	VARS	94	66.803	Tursiops_truncatus
ENSLBEG00000010341	vars	100	62.334	ENSUAMG00000010424	VARS	100	62.077	Ursus_americanus
ENSLBEG00000010341	vars	100	58.768	ENSUMAG00000013486	VARS	100	58.057	Ursus_maritimus
ENSLBEG00000010341	vars	100	64.462	ENSVVUG00000021323	VARS	100	63.636	Vulpes_vulpes
ENSLBEG00000010341	vars	100	63.121	ENSXETG00000024076	vars	100	63.420	Xenopus_tropicalis
ENSLBEG00000010341	vars	100	85.304	ENSXCOG00000019172	vars	100	85.304	Xiphophorus_couchianus
ENSLBEG00000010341	vars	100	85.165	ENSXMAG00000010927	vars	100	85.899	Xiphophorus_maculatus