EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000010566 (Gene tree)
Gene ID: 110006206
Gene Symbol: RTCB
Alias: C22orf28|FAAP|HSPC117
Full Name: tRNA-splicing ligase RtcB homolog
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Plus strand
Length: 9273 bases
Position: chrFKLU01002768.1:12708-21980
Accession: 110006206
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000013700	RtcB	PF01139.17	4.8e-146	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000014455	RTCB-201	5619	XM_020661392	ENSLBEP00000013700	505 (aa)	XP_020517048	UPI0009B3CECD

Gene Model

Click here to download ENSLBEG00000010566's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000010566's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000010566	RTCB	100	98.812	ENSLBEG00000000214	rtcb	100	98.812

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000010566	RTCB	100	94.653	ENSG00000100220	RTCB	100	94.653	Homo_sapiens
ENSLBEG00000010566	RTCB	100	97.030	ENSAPOG00000006040	rtcb	100	97.030	Acanthochromis_polyacanthus
ENSLBEG00000010566	RTCB	100	94.653	ENSAMEG00000016152	RTCB	100	94.653	Ailuropoda_melanoleuca
ENSLBEG00000010566	RTCB	100	91.683	ENSACIG00000009083	rtcb	100	91.683	Amphilophus_citrinellus
ENSLBEG00000010566	RTCB	100	97.426	ENSAOCG00000005662	rtcb	100	98.696	Amphiprion_ocellaris
ENSLBEG00000010566	RTCB	96	92.813	ENSAPEG00000024653	rtcb	100	92.813	Amphiprion_percula
ENSLBEG00000010566	RTCB	100	97.426	ENSAPEG00000024701	rtcb	100	97.426	Amphiprion_percula
ENSLBEG00000010566	RTCB	100	97.426	ENSATEG00000000618	rtcb	100	97.426	Anabas_testudineus
ENSLBEG00000010566	RTCB	100	90.751	ENSACAG00000014817	RTCB	100	90.751	Anolis_carolinensis
ENSLBEG00000010566	RTCB	72	97.222	ENSANAG00000023724	-	84	97.222	Aotus_nancymaae
ENSLBEG00000010566	RTCB	100	79.802	ENSANAG00000018191	-	91	79.802	Aotus_nancymaae
ENSLBEG00000010566	RTCB	100	94.851	ENSACLG00000008367	rtcb	100	96.087	Astatotilapia_calliptera
ENSLBEG00000010566	RTCB	100	95.644	ENSAMXG00000042320	rtcb	100	95.644	Astyanax_mexicanus
ENSLBEG00000010566	RTCB	100	94.455	ENSBTAG00000011070	RTCB	100	94.455	Bos_taurus
ENSLBEG00000010566	RTCB	100	73.465	WBGene00008877	rtcb-1	100	73.465	Caenorhabditis_elegans
ENSLBEG00000010566	RTCB	100	94.455	ENSCJAG00000006128	RTCB	100	94.455	Callithrix_jacchus
ENSLBEG00000010566	RTCB	100	90.495	ENSCAFG00000010789	-	100	90.495	Canis_familiaris
ENSLBEG00000010566	RTCB	100	94.653	ENSCAFG00000001785	RTCB	100	94.653	Canis_familiaris
ENSLBEG00000010566	RTCB	87	90.682	ENSCAFG00020018953	-	99	90.682	Canis_lupus_dingo
ENSLBEG00000010566	RTCB	100	94.653	ENSCAFG00020004890	-	100	94.653	Canis_lupus_dingo
ENSLBEG00000010566	RTCB	100	94.653	ENSCHIG00000027009	-	100	94.653	Capra_hircus
ENSLBEG00000010566	RTCB	100	94.257	ENSTSYG00000012320	RTCB	100	94.257	Carlito_syrichta
ENSLBEG00000010566	RTCB	94	94.130	ENSCAPG00000011647	RTCB	96	94.130	Cavia_aperea
ENSLBEG00000010566	RTCB	100	94.455	ENSCCAG00000000618	RTCB	100	94.455	Cebus_capucinus
ENSLBEG00000010566	RTCB	100	94.257	ENSCATG00000033424	RTCB	100	94.257	Cercocebus_atys
ENSLBEG00000010566	RTCB	100	94.257	ENSCLAG00000007997	RTCB	100	94.257	Chinchilla_lanigera
ENSLBEG00000010566	RTCB	100	94.059	ENSCSAG00000008351	RTCB	100	94.059	Chlorocebus_sabaeus
ENSLBEG00000010566	RTCB	100	81.188	ENSCHOG00000009123	RTCB	100	81.188	Choloepus_hoffmanni
ENSLBEG00000010566	RTCB	100	93.663	ENSCPBG00000023184	RTCB	100	93.663	Chrysemys_picta_bellii
ENSLBEG00000010566	RTCB	100	82.376	ENSCING00000003830	-	100	82.376	Ciona_intestinalis
ENSLBEG00000010566	RTCB	100	82.772	ENSCSAVG00000008124	-	100	82.232	Ciona_savignyi
ENSLBEG00000010566	RTCB	100	90.495	ENSCANG00000001891	RTCB	100	90.495	Colobus_angolensis_palliatus
ENSLBEG00000010566	RTCB	100	94.257	ENSCGRG00001011173	Rtcb	100	94.257	Cricetulus_griseus_chok1gshd
ENSLBEG00000010566	RTCB	93	94.904	ENSCGRG00000009587	-	96	94.904	Cricetulus_griseus_crigri
ENSLBEG00000010566	RTCB	100	96.436	ENSCSEG00000003986	rtcb	100	96.436	Cynoglossus_semilaevis
ENSLBEG00000010566	RTCB	82	95.433	ENSCVAG00000000569	rtcb	95	95.433	Cyprinodon_variegatus
ENSLBEG00000010566	RTCB	100	96.832	ENSDARG00000101047	rtcb	100	96.832	Danio_rerio
ENSLBEG00000010566	RTCB	80	90.909	ENSDNOG00000012425	RTCB	99	90.909	Dasypus_novemcinctus
ENSLBEG00000010566	RTCB	100	94.257	ENSDORG00000010855	Rtcb	100	94.257	Dipodomys_ordii
ENSLBEG00000010566	RTCB	99	85.487	FBgn0032781	RtcB	99	85.487	Drosophila_melanogaster
ENSLBEG00000010566	RTCB	100	88.515	ENSETEG00000001988	RTCB	100	88.515	Echinops_telfairi
ENSLBEG00000010566	RTCB	100	85.941	ENSEBUG00000014235	rtcb	100	85.941	Eptatretus_burgeri
ENSLBEG00000010566	RTCB	100	94.455	ENSEASG00005019059	RTCB	100	94.455	Equus_asinus_asinus
ENSLBEG00000010566	RTCB	100	94.455	ENSECAG00000023998	RTCB	100	94.455	Equus_caballus
ENSLBEG00000010566	RTCB	89	85.682	ENSEEUG00000006251	RTCB	100	85.682	Erinaceus_europaeus
ENSLBEG00000010566	RTCB	100	83.554	ENSELUG00000009275	rtcb	100	83.554	Esox_lucius
ENSLBEG00000010566	RTCB	100	94.653	ENSFCAG00000026480	RTCB	100	94.653	Felis_catus
ENSLBEG00000010566	RTCB	100	94.653	ENSFALG00000013334	RTCB	100	94.653	Ficedula_albicollis
ENSLBEG00000010566	RTCB	100	94.455	ENSFDAG00000018150	RTCB	100	94.455	Fukomys_damarensis
ENSLBEG00000010566	RTCB	100	97.228	ENSFHEG00000009595	rtcb	100	97.228	Fundulus_heteroclitus
ENSLBEG00000010566	RTCB	100	94.653	ENSGMOG00000018882	rtcb	100	94.653	Gadus_morhua
ENSLBEG00000010566	RTCB	100	94.257	ENSGALG00000012611	RTCB	100	94.257	Gallus_gallus
ENSLBEG00000010566	RTCB	100	96.436	ENSGAFG00000004198	rtcb	100	96.436	Gambusia_affinis
ENSLBEG00000010566	RTCB	100	96.832	ENSGACG00000000586	rtcb	100	96.832	Gasterosteus_aculeatus
ENSLBEG00000010566	RTCB	93	93.404	ENSGAGG00000019133	RTCB	98	93.404	Gopherus_agassizii
ENSLBEG00000010566	RTCB	100	94.653	ENSGGOG00000011402	RTCB	100	94.653	Gorilla_gorilla
ENSLBEG00000010566	RTCB	100	94.851	ENSHBUG00000020571	rtcb	100	94.851	Haplochromis_burtoni
ENSLBEG00000010566	RTCB	100	94.455	ENSHGLG00000004492	RTCB	100	94.455	Heterocephalus_glaber_female
ENSLBEG00000010566	RTCB	93	67.804	ENSHGLG00000001066	-	99	67.804	Heterocephalus_glaber_female
ENSLBEG00000010566	RTCB	100	94.455	ENSHGLG00100008965	RTCB	100	94.455	Heterocephalus_glaber_male
ENSLBEG00000010566	RTCB	100	94.083	ENSHCOG00000006450	rtcb	100	94.083	Hippocampus_comes
ENSLBEG00000010566	RTCB	100	95.248	ENSIPUG00000015443	rtcb	100	95.248	Ictalurus_punctatus
ENSLBEG00000010566	RTCB	100	94.653	ENSSTOG00000003878	RTCB	100	94.653	Ictidomys_tridecemlineatus
ENSLBEG00000010566	RTCB	100	94.257	ENSJJAG00000010667	Rtcb	100	94.257	Jaculus_jaculus
ENSLBEG00000010566	RTCB	100	97.030	ENSKMAG00000013178	rtcb	100	97.030	Kryptolebias_marmoratus
ENSLBEG00000010566	RTCB	100	94.653	ENSLACG00000013033	RTCB	100	94.653	Latimeria_chalumnae
ENSLBEG00000010566	RTCB	100	96.238	ENSLOCG00000016515	rtcb	99	96.238	Lepisosteus_oculatus
ENSLBEG00000010566	RTCB	100	94.059	ENSLAFG00000002082	RTCB	100	94.059	Loxodonta_africana
ENSLBEG00000010566	RTCB	100	94.059	ENSMFAG00000034419	RTCB	100	94.059	Macaca_fascicularis
ENSLBEG00000010566	RTCB	100	94.059	ENSMMUG00000006720	RTCB	100	94.059	Macaca_mulatta
ENSLBEG00000010566	RTCB	100	94.059	ENSMNEG00000040669	RTCB	100	94.059	Macaca_nemestrina
ENSLBEG00000010566	RTCB	100	94.257	ENSMLEG00000040505	RTCB	100	94.257	Mandrillus_leucophaeus
ENSLBEG00000010566	RTCB	100	96.436	ENSMAMG00000020676	rtcb	100	96.436	Mastacembelus_armatus
ENSLBEG00000010566	RTCB	100	94.851	ENSMZEG00005018942	rtcb	100	94.851	Maylandia_zebra
ENSLBEG00000010566	RTCB	100	93.886	ENSMGAG00000012805	RTCB	100	93.886	Meleagris_gallopavo
ENSLBEG00000010566	RTCB	60	99.115	ENSMAUG00000008301	Rtcb	100	99.115	Mesocricetus_auratus
ENSLBEG00000010566	RTCB	100	94.455	ENSMICG00000013303	-	100	94.455	Microcebus_murinus
ENSLBEG00000010566	RTCB	100	75.446	ENSMICG00000036677	-	100	75.446	Microcebus_murinus
ENSLBEG00000010566	RTCB	100	94.653	ENSMOCG00000002440	Rtcb	100	94.653	Microtus_ochrogaster
ENSLBEG00000010566	RTCB	100	96.832	ENSMMOG00000005987	rtcb	100	96.832	Mola_mola
ENSLBEG00000010566	RTCB	100	94.455	ENSMODG00000001414	RTCB	100	94.455	Monodelphis_domestica
ENSLBEG00000010566	RTCB	100	97.624	ENSMALG00000007603	rtcb	100	97.624	Monopterus_albus
ENSLBEG00000010566	RTCB	100	94.257	MGP_CAROLIEiJ_G0015689	Rtcb	100	94.257	Mus_caroli
ENSLBEG00000010566	RTCB	100	94.257	ENSMUSG00000001783	Rtcb	100	94.257	Mus_musculus
ENSLBEG00000010566	RTCB	100	94.257	MGP_PahariEiJ_G0031396	Rtcb	100	94.257	Mus_pahari
ENSLBEG00000010566	RTCB	100	94.257	MGP_SPRETEiJ_G0016507	Rtcb	100	94.257	Mus_spretus
ENSLBEG00000010566	RTCB	100	94.653	ENSMPUG00000012285	RTCB	100	94.653	Mustela_putorius_furo
ENSLBEG00000010566	RTCB	100	92.110	ENSMLUG00000007803	RTCB	100	92.110	Myotis_lucifugus
ENSLBEG00000010566	RTCB	72	98.667	ENSNGAG00000005093	Rtcb	100	98.667	Nannospalax_galili
ENSLBEG00000010566	RTCB	100	95.050	ENSNBRG00000017202	rtcb	100	95.050	Neolamprologus_brichardi
ENSLBEG00000010566	RTCB	100	94.653	ENSNLEG00000004960	RTCB	100	94.653	Nomascus_leucogenys
ENSLBEG00000010566	RTCB	100	70.891	ENSMEUG00000007809	-	100	70.891	Notamacropus_eugenii
ENSLBEG00000010566	RTCB	73	97.500	ENSOPRG00000003488	RTCB	79	97.500	Ochotona_princeps
ENSLBEG00000010566	RTCB	100	63.168	ENSODEG00000005042	-	100	63.168	Octodon_degus
ENSLBEG00000010566	RTCB	82	99.057	ENSODEG00000013033	-	100	99.057	Octodon_degus
ENSLBEG00000010566	RTCB	100	96.436	ENSONIG00000007474	rtcb	100	96.436	Oreochromis_niloticus
ENSLBEG00000010566	RTCB	100	94.059	ENSOANG00000005524	RTCB	100	94.059	Ornithorhynchus_anatinus
ENSLBEG00000010566	RTCB	93	94.255	ENSOCUG00000008270	RTCB	96	94.255	Oryctolagus_cuniculus
ENSLBEG00000010566	RTCB	100	96.832	ENSORLG00000020093	rtcb	100	96.832	Oryzias_latipes
ENSLBEG00000010566	RTCB	100	96.832	ENSORLG00020003706	rtcb	100	96.832	Oryzias_latipes_hni
ENSLBEG00000010566	RTCB	100	97.030	ENSORLG00015002968	rtcb	100	97.030	Oryzias_latipes_hsok
ENSLBEG00000010566	RTCB	100	96.634	ENSOMEG00000021278	rtcb	100	96.634	Oryzias_melastigma
ENSLBEG00000010566	RTCB	100	93.861	ENSOGAG00000001425	RTCB	100	93.861	Otolemur_garnettii
ENSLBEG00000010566	RTCB	100	94.653	ENSOARG00000018008	RTCB	100	94.653	Ovis_aries
ENSLBEG00000010566	RTCB	100	94.653	ENSPPAG00000028667	RTCB	100	94.653	Pan_paniscus
ENSLBEG00000010566	RTCB	100	94.653	ENSPPRG00000004038	RTCB	100	94.653	Panthera_pardus
ENSLBEG00000010566	RTCB	94	90.316	ENSPTIG00000020499	RTCB	97	91.368	Panthera_tigris_altaica
ENSLBEG00000010566	RTCB	100	94.653	ENSPTRG00000014287	RTCB	100	94.653	Pan_troglodytes
ENSLBEG00000010566	RTCB	100	94.059	ENSPANG00000016035	RTCB	100	94.059	Papio_anubis
ENSLBEG00000010566	RTCB	100	94.851	ENSPKIG00000001881	rtcb	100	94.851	Paramormyrops_kingsleyae
ENSLBEG00000010566	RTCB	91	94.565	ENSPSIG00000011690	RTCB	100	94.565	Pelodiscus_sinensis
ENSLBEG00000010566	RTCB	100	96.040	ENSPMGG00000016672	rtcb	100	96.040	Periophthalmus_magnuspinnatus
ENSLBEG00000010566	RTCB	100	94.257	ENSPEMG00000019548	Rtcb	100	94.257	Peromyscus_maniculatus_bairdii
ENSLBEG00000010566	RTCB	100	91.683	ENSPMAG00000005657	rtcb	100	91.683	Petromyzon_marinus
ENSLBEG00000010566	RTCB	100	94.455	ENSPCIG00000009467	RTCB	100	94.455	Phascolarctos_cinereus
ENSLBEG00000010566	RTCB	100	96.832	ENSPFOG00000003058	rtcb	100	96.832	Poecilia_formosa
ENSLBEG00000010566	RTCB	100	96.634	ENSPLAG00000017663	rtcb	100	96.634	Poecilia_latipinna
ENSLBEG00000010566	RTCB	100	96.832	ENSPMEG00000006227	rtcb	100	96.832	Poecilia_mexicana
ENSLBEG00000010566	RTCB	100	96.436	ENSPREG00000018467	rtcb	100	96.436	Poecilia_reticulata
ENSLBEG00000010566	RTCB	100	94.653	ENSPPYG00000011752	RTCB	100	94.653	Pongo_abelii
ENSLBEG00000010566	RTCB	93	77.754	ENSPCAG00000013641	RTCB	100	77.754	Procavia_capensis
ENSLBEG00000010566	RTCB	100	94.257	ENSPCOG00000017243	RTCB	100	94.257	Propithecus_coquereli
ENSLBEG00000010566	RTCB	93	93.617	ENSPVAG00000002380	RTCB	100	93.617	Pteropus_vampyrus
ENSLBEG00000010566	RTCB	100	94.851	ENSPNYG00000022760	rtcb	100	94.851	Pundamilia_nyererei
ENSLBEG00000010566	RTCB	100	96.040	ENSPNAG00000009209	rtcb	100	96.040	Pygocentrus_nattereri
ENSLBEG00000010566	RTCB	100	94.257	ENSRNOG00000004813	Rtcb	100	94.257	Rattus_norvegicus
ENSLBEG00000010566	RTCB	100	86.364	ENSRBIG00000042090	RTCB	100	86.364	Rhinopithecus_bieti
ENSLBEG00000010566	RTCB	100	89.703	ENSSBOG00000020085	-	100	89.703	Saimiri_boliviensis_boliviensis
ENSLBEG00000010566	RTCB	94	95.148	ENSSHAG00000016277	RTCB	100	95.148	Sarcophilus_harrisii
ENSLBEG00000010566	RTCB	100	93.663	ENSSFOG00015011572	RTCB	100	93.663	Scleropages_formosus
ENSLBEG00000010566	RTCB	100	95.446	ENSSFOG00015000763	rtcb	100	95.446	Scleropages_formosus
ENSLBEG00000010566	RTCB	100	93.465	ENSSMAG00000005096	rtcb	100	93.465	Scophthalmus_maximus
ENSLBEG00000010566	RTCB	100	97.030	ENSSDUG00000012605	rtcb	100	97.030	Seriola_dumerili
ENSLBEG00000010566	RTCB	100	97.030	ENSSLDG00000019458	rtcb	100	97.030	Seriola_lalandi_dorsalis
ENSLBEG00000010566	RTCB	66	100.000	ENSSARG00000004799	-	70	100.000	Sorex_araneus
ENSLBEG00000010566	RTCB	100	93.861	ENSSPUG00000012814	RTCB	100	93.861	Sphenodon_punctatus
ENSLBEG00000010566	RTCB	100	97.426	ENSSPAG00000004623	rtcb	100	97.426	Stegastes_partitus
ENSLBEG00000010566	RTCB	100	94.653	ENSSSCG00000000158	RTCB	100	94.653	Sus_scrofa
ENSLBEG00000010566	RTCB	100	94.653	ENSTGUG00000010947	RTCB	99	94.653	Taeniopygia_guttata
ENSLBEG00000010566	RTCB	91	97.609	ENSTRUG00000009880	rtcb	100	97.609	Takifugu_rubripes
ENSLBEG00000010566	RTCB	100	94.653	ENSTNIG00000002484	rtcb	100	94.653	Tetraodon_nigroviridis
ENSLBEG00000010566	RTCB	100	81.386	ENSTBEG00000004418	RTCB	100	81.386	Tupaia_belangeri
ENSLBEG00000010566	RTCB	93	93.830	ENSTTRG00000006417	RTCB	100	93.830	Tursiops_truncatus
ENSLBEG00000010566	RTCB	100	94.653	ENSUAMG00000022792	RTCB	100	94.653	Ursus_americanus
ENSLBEG00000010566	RTCB	100	94.653	ENSUMAG00000017225	RTCB	100	94.653	Ursus_maritimus
ENSLBEG00000010566	RTCB	100	94.455	ENSVPAG00000005375	RTCB	100	94.455	Vicugna_pacos
ENSLBEG00000010566	RTCB	100	94.653	ENSVVUG00000023408	RTCB	100	94.840	Vulpes_vulpes
ENSLBEG00000010566	RTCB	100	94.455	ENSXETG00000011523	rtcb	100	94.455	Xenopus_tropicalis
ENSLBEG00000010566	RTCB	100	96.436	ENSXMAG00000002855	rtcb	100	96.436	Xiphophorus_maculatus