EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000012873 (Gene tree)
Gene ID: 109984978
Gene Symbol: -
Alias: -
Full Name: RNA-binding Raly-like protein
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 45077 bases
Position: chrFKLU01000077.1:69264-114340
Accession: 109984978
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000016674	RRM_1	PF00076.22	2.9e-12	1	1
ENSLBEP00000016687	RRM_1	PF00076.22	3.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000017620	-	3198	XM_020635162	ENSLBEP00000016674	292 (aa)	XP_020490818	UPI0009B45DD2
ENSLBET00000017633	-	3160	XM_020635159	ENSLBEP00000016687	295 (aa)	XP_020490815	UPI0009B483BD

Gene Model

Click here to download ENSLBEG00000012873's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000012873's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000012873	-	76	60.181	ENSLBEG00000022656	raly	81	61.991
ENSLBEG00000012873	-	77	48.971	ENSLBEG00000024418	-	95	40.924
ENSLBEG00000012873	-	75	56.637	ENSLBEG00000006193	-	83	50.178
ENSLBEG00000012873	-	100	72.635	ENSLBEG00000011011	-	100	73.311
ENSLBEG00000012873	-	77	52.155	ENSLBEG00000006979	-	95	43.836

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000012873	-	100	90.753	ENSAPOG00000008744	-	100	90.753	Acanthochromis_polyacanthus
ENSLBEG00000012873	-	97	82.474	ENSACIG00000007143	-	98	81.695	Amphilophus_citrinellus
ENSLBEG00000012873	-	100	92.808	ENSAOCG00000023599	-	100	92.808	Amphiprion_ocellaris
ENSLBEG00000012873	-	100	72.635	ENSAOCG00000001605	-	100	72.973	Amphiprion_ocellaris
ENSLBEG00000012873	-	87	70.356	ENSATEG00000023356	-	97	70.751	Anabas_testudineus
ENSLBEG00000012873	-	97	83.051	ENSATEG00000022219	-	94	86.622	Anabas_testudineus
ENSLBEG00000012873	-	100	92.466	ENSACLG00000011720	-	100	92.466	Astatotilapia_calliptera
ENSLBEG00000012873	-	100	72.973	ENSACLG00000006949	-	100	72.973	Astatotilapia_calliptera
ENSLBEG00000012873	-	100	71.959	ENSAMXG00000019031	-	100	71.959	Astyanax_mexicanus
ENSLBEG00000012873	-	100	63.758	ENSAMXG00000032617	-	100	64.094	Astyanax_mexicanus
ENSLBEG00000012873	-	100	80.479	ENSCSEG00000014237	-	100	80.479	Cynoglossus_semilaevis
ENSLBEG00000012873	-	100	91.096	ENSCVAG00000013624	-	100	91.096	Cyprinodon_variegatus
ENSLBEG00000012873	-	100	72.635	ENSCVAG00000018104	-	100	72.973	Cyprinodon_variegatus
ENSLBEG00000012873	-	63	73.224	ENSDARG00000090292	ralyl	81	80.247	Danio_rerio
ENSLBEG00000012873	-	93	62.182	ENSELUG00000001702	-	96	62.366	Esox_lucius
ENSLBEG00000012873	-	57	73.333	ENSGMOG00000005914	-	100	73.333	Gadus_morhua
ENSLBEG00000012873	-	61	78.090	ENSGACG00000004991	-	91	81.928	Gasterosteus_aculeatus
ENSLBEG00000012873	-	100	92.466	ENSHBUG00000010040	-	100	92.466	Haplochromis_burtoni
ENSLBEG00000012873	-	100	72.973	ENSHBUG00000015412	-	100	72.973	Haplochromis_burtoni
ENSLBEG00000012873	-	100	71.284	ENSIPUG00000000507	ralyl	100	71.284	Ictalurus_punctatus
ENSLBEG00000012873	-	100	72.635	ENSKMAG00000018155	-	100	72.973	Kryptolebias_marmoratus
ENSLBEG00000012873	-	100	89.041	ENSKMAG00000022093	-	100	89.384	Kryptolebias_marmoratus
ENSLBEG00000012873	-	100	68.581	ENSLOCG00000012787	ralyl	99	68.243	Lepisosteus_oculatus
ENSLBEG00000012873	-	99	85.862	ENSMAMG00000001723	-	97	85.862	Mastacembelus_armatus
ENSLBEG00000012873	-	100	92.466	ENSMZEG00005024447	-	100	92.466	Maylandia_zebra
ENSLBEG00000012873	-	98	70.847	ENSMZEG00005018748	-	98	71.918	Maylandia_zebra
ENSLBEG00000012873	-	97	82.095	ENSMMOG00000020441	-	86	84.459	Mola_mola
ENSLBEG00000012873	-	100	71.622	ENSMALG00000012952	-	100	71.959	Monopterus_albus
ENSLBEG00000012873	-	100	90.068	ENSMALG00000019019	-	78	90.068	Monopterus_albus
ENSLBEG00000012873	-	97	82.474	ENSNBRG00000011206	-	98	81.695	Neolamprologus_brichardi
ENSLBEG00000012873	-	98	70.847	ENSNBRG00000011376	-	98	72.260	Neolamprologus_brichardi
ENSLBEG00000012873	-	100	85.274	ENSORLG00000017934	-	100	84.932	Oryzias_latipes
ENSLBEG00000012873	-	100	73.986	ENSORLG00000012719	-	100	74.324	Oryzias_latipes
ENSLBEG00000012873	-	100	73.986	ENSORLG00020004438	-	100	74.324	Oryzias_latipes_hni
ENSLBEG00000012873	-	100	84.247	ENSORLG00020000082	-	100	83.904	Oryzias_latipes_hni
ENSLBEG00000012873	-	100	73.986	ENSORLG00015004727	-	100	74.324	Oryzias_latipes_hsok
ENSLBEG00000012873	-	100	84.589	ENSORLG00015004280	-	100	84.247	Oryzias_latipes_hsok
ENSLBEG00000012873	-	100	85.616	ENSOMEG00000011821	-	100	85.616	Oryzias_melastigma
ENSLBEG00000012873	-	100	73.311	ENSOMEG00000001170	-	100	73.649	Oryzias_melastigma
ENSLBEG00000012873	-	100	72.014	ENSPKIG00000015926	-	100	72.014	Paramormyrops_kingsleyae
ENSLBEG00000012873	-	99	74.662	ENSPMGG00000009532	-	99	72.973	Periophthalmus_magnuspinnatus
ENSLBEG00000012873	-	78	68.966	ENSPMGG00000014481	-	95	69.264	Periophthalmus_magnuspinnatus
ENSLBEG00000012873	-	97	86.395	ENSPFOG00000006120	-	99	86.395	Poecilia_formosa
ENSLBEG00000012873	-	97	72.414	ENSPLAG00000011323	ralyl	100	72.759	Poecilia_latipinna
ENSLBEG00000012873	-	97	82.394	ENSPLAG00000009877	-	77	81.597	Poecilia_latipinna
ENSLBEG00000012873	-	97	72.414	ENSPMEG00000023847	ralyl	100	72.759	Poecilia_mexicana
ENSLBEG00000012873	-	97	82.394	ENSPMEG00000013624	-	80	81.818	Poecilia_mexicana
ENSLBEG00000012873	-	97	71.724	ENSPREG00000001956	ralyl	100	72.069	Poecilia_reticulata
ENSLBEG00000012873	-	97	89.753	ENSPREG00000013805	-	100	84.295	Poecilia_reticulata
ENSLBEG00000012873	-	97	82.474	ENSPNYG00000008772	-	98	81.695	Pundamilia_nyererei
ENSLBEG00000012873	-	98	70.847	ENSPNYG00000003548	-	98	71.918	Pundamilia_nyererei
ENSLBEG00000012873	-	100	66.438	ENSPNAG00000026098	-	100	66.096	Pygocentrus_nattereri
ENSLBEG00000012873	-	100	71.284	ENSPNAG00000000498	-	88	71.284	Pygocentrus_nattereri
ENSLBEG00000012873	-	100	73.986	ENSSFOG00015009401	-	100	73.986	Scleropages_formosus
ENSLBEG00000012873	-	100	58.644	ENSSFOG00015004575	-	97	64.111	Scleropages_formosus
ENSLBEG00000012873	-	97	85.263	ENSSMAG00000015907	-	94	84.722	Scophthalmus_maximus
ENSLBEG00000012873	-	100	72.635	ENSSMAG00000005608	-	100	72.635	Scophthalmus_maximus
ENSLBEG00000012873	-	100	72.973	ENSSDUG00000007587	-	100	73.311	Seriola_dumerili
ENSLBEG00000012873	-	100	92.123	ENSSDUG00000012473	-	100	92.123	Seriola_dumerili
ENSLBEG00000012873	-	100	91.781	ENSSLDG00000011534	-	100	91.781	Seriola_lalandi_dorsalis
ENSLBEG00000012873	-	100	72.297	ENSSLDG00000020603	-	100	72.635	Seriola_lalandi_dorsalis
ENSLBEG00000012873	-	100	76.712	ENSSPAG00000013858	-	95	77.700	Stegastes_partitus
ENSLBEG00000012873	-	99	82.993	ENSTRUG00000003829	-	99	82.993	Takifugu_rubripes
ENSLBEG00000012873	-	97	81.973	ENSTNIG00000005594	-	100	81.544	Tetraodon_nigroviridis
ENSLBEG00000012873	-	100	64.430	ENSXETG00000017729	ralyl	99	63.758	Xenopus_tropicalis
ENSLBEG00000012873	-	97	70.470	ENSXCOG00000015156	-	93	70.470	Xiphophorus_couchianus
ENSLBEG00000012873	-	100	73.649	ENSXMAG00000008396	-	100	73.986	Xiphophorus_maculatus
ENSLBEG00000012873	-	100	90.068	ENSXMAG00000007614	-	100	90.068	Xiphophorus_maculatus