EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSLBEG00000013295 (Gene tree)
Gene ID: 109976229
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 7767 bases
Position: chrFKLU01003925.1:1-7767
Accession: 109976229
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000017345	ResIII	PF04851.15	1.6e-10	1	1
ENSLBEP00000017332	ResIII	PF04851.15	5.3e-06	1	1
ENSLBEP00000017345	DEAD	PF00270.29	4.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000018318	SMARCA1-202	3187	XM_020626392	ENSLBEP00000017345	985 (aa)	XP_020482048	-
ENSLBET00000018304	SMARCA1-201	2370	-	ENSLBEP00000017332	790 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000013295's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000013295's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSLBEG00000013295	SMARCA1	58	46.215	ENSLBEG00000027807	hells	73	41.315
ENSLBEG00000013295	SMARCA1	51	31.169	ENSLBEG00000000091	ercc6l	51	32.752
ENSLBEG00000013295	SMARCA1	51	41.818	ENSLBEG00000009390	-	92	48.163
ENSLBEG00000013295	SMARCA1	51	30.963	ENSLBEG00000014617	rad54l	68	31.847
ENSLBEG00000013295	SMARCA1	62	41.968	ENSLBEG00000023845	chd1l	62	42.857
ENSLBEG00000013295	SMARCA1	100	100.000	ENSLBEG00000018112	smarca5	94	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000013295	SMARCA1	100	84.829	ENSG00000102038	SMARCA1	88	83.888	Homo_sapiens
ENSLBEG00000013295	SMARCA1	100	98.354	ENSAPOG00000016035	smarca5	94	96.626	Acanthochromis_polyacanthus
ENSLBEG00000013295	SMARCA1	100	83.686	ENSAMEG00000015218	SMARCA1	88	82.715	Ailuropoda_melanoleuca
ENSLBEG00000013295	SMARCA1	100	97.089	ENSACIG00000016982	smarca5	94	96.679	Amphilophus_citrinellus
ENSLBEG00000013295	SMARCA1	100	98.354	ENSAOCG00000015578	smarca5	94	96.626	Amphiprion_ocellaris
ENSLBEG00000013295	SMARCA1	100	98.354	ENSAPEG00000011117	smarca5	93	98.354	Amphiprion_percula
ENSLBEG00000013295	SMARCA1	100	97.595	ENSATEG00000012894	smarca5	94	96.213	Anabas_testudineus
ENSLBEG00000013295	SMARCA1	100	85.588	ENSAPLG00000013149	SMARCA1	94	85.049	Anas_platyrhynchos
ENSLBEG00000013295	SMARCA1	100	86.094	ENSACAG00000011376	SMARCA1	91	83.281	Anolis_carolinensis
ENSLBEG00000013295	SMARCA1	100	79.014	ENSANAG00000023098	SMARCA1	88	78.947	Aotus_nancymaae
ENSLBEG00000013295	SMARCA1	100	96.962	ENSACLG00000025356	smarca5	94	95.297	Astatotilapia_calliptera
ENSLBEG00000013295	SMARCA1	100	85.246	ENSAMXG00000011227	smarca1	95	85.335	Astyanax_mexicanus
ENSLBEG00000013295	SMARCA1	100	95.949	ENSAMXG00000005709	smarca5	94	90.918	Astyanax_mexicanus
ENSLBEG00000013295	SMARCA1	100	84.829	ENSBTAG00000002292	SMARCA1	90	82.609	Bos_taurus
ENSLBEG00000013295	SMARCA1	100	67.754	WBGene00002169	isw-1	94	62.866	Caenorhabditis_elegans
ENSLBEG00000013295	SMARCA1	100	84.829	ENSCJAG00000002868	SMARCA1	88	83.888	Callithrix_jacchus
ENSLBEG00000013295	SMARCA1	100	75.536	ENSCAFG00000018673	SMARCA1	93	75.910	Canis_familiaris
ENSLBEG00000013295	SMARCA1	100	85.082	ENSCAFG00020001751	SMARCA1	88	83.996	Canis_lupus_dingo
ENSLBEG00000013295	SMARCA1	100	84.703	ENSCHIG00000009837	SMARCA1	88	83.566	Capra_hircus
ENSLBEG00000013295	SMARCA1	100	84.829	ENSTSYG00000004240	SMARCA1	93	83.422	Carlito_syrichta
ENSLBEG00000013295	SMARCA1	100	84.576	ENSCPOG00000013601	SMARCA1	90	82.185	Cavia_porcellus
ENSLBEG00000013295	SMARCA1	100	81.669	ENSCCAG00000030817	SMARCA1	88	81.096	Cebus_capucinus
ENSLBEG00000013295	SMARCA1	100	84.829	ENSCATG00000015921	SMARCA1	89	83.888	Cercocebus_atys
ENSLBEG00000013295	SMARCA1	100	84.576	ENSCLAG00000002171	SMARCA1	88	83.351	Chinchilla_lanigera
ENSLBEG00000013295	SMARCA1	100	84.829	ENSCSAG00000008460	SMARCA1	88	83.888	Chlorocebus_sabaeus
ENSLBEG00000013295	SMARCA1	100	85.714	ENSCPBG00000001146	SMARCA1	88	85.054	Chrysemys_picta_bellii
ENSLBEG00000013295	SMARCA1	100	78.212	ENSCING00000004110	swi/snf	94	74.423	Ciona_intestinalis
ENSLBEG00000013295	SMARCA1	100	78.715	ENSCSAVG00000004620	-	98	75.968	Ciona_savignyi
ENSLBEG00000013295	SMARCA1	100	84.829	ENSCANG00000007183	SMARCA1	88	83.996	Colobus_angolensis_palliatus
ENSLBEG00000013295	SMARCA1	100	84.071	ENSCGRG00001010776	Smarca1	88	83.029	Cricetulus_griseus_chok1gshd
ENSLBEG00000013295	SMARCA1	100	83.818	ENSCGRG00000015301	Smarca1	93	82.372	Cricetulus_griseus_crigri
ENSLBEG00000013295	SMARCA1	100	98.228	ENSCSEG00000000328	smarca5	94	96.516	Cynoglossus_semilaevis
ENSLBEG00000013295	SMARCA1	100	97.468	ENSCVAG00000008668	smarca5	93	97.468	Cyprinodon_variegatus
ENSLBEG00000013295	SMARCA1	100	83.415	ENSDARG00000012776	smarca1	91	83.157	Danio_rerio
ENSLBEG00000013295	SMARCA1	100	94.937	ENSDARG00000052348	smarca5	94	90.491	Danio_rerio
ENSLBEG00000013295	SMARCA1	100	84.450	ENSDNOG00000004315	SMARCA1	90	83.351	Dasypus_novemcinctus
ENSLBEG00000013295	SMARCA1	100	84.956	ENSDORG00000009270	Smarca1	89	84.103	Dipodomys_ordii
ENSLBEG00000013295	SMARCA1	100	78.921	FBgn0011604	Iswi	92	74.453	Drosophila_melanogaster
ENSLBEG00000013295	SMARCA1	92	76.619	ENSETEG00000017426	SMARCA1	81	80.000	Echinops_telfairi
ENSLBEG00000013295	SMARCA1	99	84.264	ENSEBUG00000001239	smarca5	94	81.217	Eptatretus_burgeri
ENSLBEG00000013295	SMARCA1	100	82.301	ENSEASG00005008218	SMARCA1	93	80.932	Equus_asinus_asinus
ENSLBEG00000013295	SMARCA1	100	85.082	ENSECAG00000012106	SMARCA1	88	83.888	Equus_caballus
ENSLBEG00000013295	SMARCA1	81	86.667	ENSEEUG00000014927	SMARCA1	78	83.775	Erinaceus_europaeus
ENSLBEG00000013295	SMARCA1	100	85.624	ENSELUG00000010515	smarca1	90	84.957	Esox_lucius
ENSLBEG00000013295	SMARCA1	100	84.956	ENSFCAG00000018496	SMARCA1	88	83.888	Felis_catus
ENSLBEG00000013295	SMARCA1	98	85.309	ENSFALG00000000209	SMARCA1	98	84.775	Ficedula_albicollis
ENSLBEG00000013295	SMARCA1	100	83.313	ENSFDAG00000009818	SMARCA1	92	82.397	Fukomys_damarensis
ENSLBEG00000013295	SMARCA1	100	97.342	ENSFHEG00000007687	smarca5	94	94.534	Fundulus_heteroclitus
ENSLBEG00000013295	SMARCA1	100	85.588	ENSGALG00000008431	SMARCA1	94	82.932	Gallus_gallus
ENSLBEG00000013295	SMARCA1	100	97.342	ENSGAFG00000017731	smarca5	94	95.906	Gambusia_affinis
ENSLBEG00000013295	SMARCA1	100	85.714	ENSGAGG00000023575	SMARCA1	94	85.542	Gopherus_agassizii
ENSLBEG00000013295	SMARCA1	77	78.398	ENSGGOG00000012841	-	93	78.499	Gorilla_gorilla
ENSLBEG00000013295	SMARCA1	100	83.818	ENSHGLG00000003080	SMARCA1	88	82.707	Heterocephalus_glaber_female
ENSLBEG00000013295	SMARCA1	100	83.818	ENSHGLG00100001102	SMARCA1	94	82.177	Heterocephalus_glaber_male
ENSLBEG00000013295	SMARCA1	100	98.354	ENSHCOG00000005458	smarca5	94	96.626	Hippocampus_comes
ENSLBEG00000013295	SMARCA1	100	95.443	ENSIPUG00000005229	SMARCA5	93	93.220	Ictalurus_punctatus
ENSLBEG00000013295	SMARCA1	100	85.624	ENSIPUG00000016905	Smarca1	94	84.239	Ictalurus_punctatus
ENSLBEG00000013295	SMARCA1	100	84.576	ENSSTOG00000014524	SMARCA1	91	82.572	Ictidomys_tridecemlineatus
ENSLBEG00000013295	SMARCA1	100	84.071	ENSJJAG00000002593	Smarca1	89	83.029	Jaculus_jaculus
ENSLBEG00000013295	SMARCA1	100	97.342	ENSKMAG00000003777	smarca5	94	95.803	Kryptolebias_marmoratus
ENSLBEG00000013295	SMARCA1	100	86.726	ENSLACG00000016697	SMARCA1	91	85.484	Latimeria_chalumnae
ENSLBEG00000013295	SMARCA1	100	86.979	ENSLOCG00000014591	smarca1	90	86.117	Lepisosteus_oculatus
ENSLBEG00000013295	SMARCA1	100	84.324	ENSLAFG00000000896	SMARCA1	95	82.303	Loxodonta_africana
ENSLBEG00000013295	SMARCA1	100	84.829	ENSMFAG00000002117	SMARCA1	93	83.708	Macaca_fascicularis
ENSLBEG00000013295	SMARCA1	100	84.829	ENSMMUG00000008818	SMARCA1	95	84.331	Macaca_mulatta
ENSLBEG00000013295	SMARCA1	100	84.829	ENSMNEG00000041768	SMARCA1	93	83.708	Macaca_nemestrina
ENSLBEG00000013295	SMARCA1	100	84.829	ENSMLEG00000043198	SMARCA1	88	83.888	Mandrillus_leucophaeus
ENSLBEG00000013295	SMARCA1	100	97.975	ENSMAMG00000014294	smarca5	94	95.515	Mastacembelus_armatus
ENSLBEG00000013295	SMARCA1	100	96.962	ENSMZEG00005009369	smarca5	94	95.297	Maylandia_zebra
ENSLBEG00000013295	SMARCA1	100	84.309	ENSMGAG00000007042	SMARCA1	93	83.652	Meleagris_gallopavo
ENSLBEG00000013295	SMARCA1	100	84.071	ENSMAUG00000008133	Smarca1	89	82.265	Mesocricetus_auratus
ENSLBEG00000013295	SMARCA1	100	85.082	ENSMICG00000015768	SMARCA1	88	84.211	Microcebus_murinus
ENSLBEG00000013295	SMARCA1	100	84.197	ENSMOCG00000009464	Smarca1	89	81.866	Microtus_ochrogaster
ENSLBEG00000013295	SMARCA1	100	96.076	ENSMMOG00000005547	smarca5	94	95.187	Mola_mola
ENSLBEG00000013295	SMARCA1	100	86.220	ENSMODG00000013187	-	93	82.062	Monodelphis_domestica
ENSLBEG00000013295	SMARCA1	100	97.975	ENSMALG00000002081	smarca5	95	95.293	Monopterus_albus
ENSLBEG00000013295	SMARCA1	100	84.197	MGP_CAROLIEiJ_G0033034	Smarca1	89	82.372	Mus_caroli
ENSLBEG00000013295	SMARCA1	100	84.197	ENSMUSG00000031099	Smarca1	89	82.479	Mus_musculus
ENSLBEG00000013295	SMARCA1	100	84.324	MGP_PahariEiJ_G0031579	Smarca1	89	82.372	Mus_pahari
ENSLBEG00000013295	SMARCA1	100	84.197	MGP_SPRETEiJ_G0034192	Smarca1	89	82.479	Mus_spretus
ENSLBEG00000013295	SMARCA1	100	83.811	ENSMPUG00000017423	SMARCA1	83	82.927	Mustela_putorius_furo
ENSLBEG00000013295	SMARCA1	100	82.112	ENSMLUG00000029614	SMARCA1	88	81.164	Myotis_lucifugus
ENSLBEG00000013295	SMARCA1	100	84.450	ENSNGAG00000006492	Smarca1	89	82.799	Nannospalax_galili
ENSLBEG00000013295	SMARCA1	100	97.089	ENSNBRG00000004463	smarca5	94	96.047	Neolamprologus_brichardi
ENSLBEG00000013295	SMARCA1	100	83.944	ENSNLEG00000015179	SMARCA1	93	82.976	Nomascus_leucogenys
ENSLBEG00000013295	SMARCA1	98	75.095	ENSMEUG00000008819	SMARCA1	99	75.796	Notamacropus_eugenii
ENSLBEG00000013295	SMARCA1	100	83.313	ENSODEG00000012163	SMARCA1	89	82.185	Octodon_degus
ENSLBEG00000013295	SMARCA1	100	97.089	ENSONIG00000009993	smarca5	94	95.399	Oreochromis_niloticus
ENSLBEG00000013295	SMARCA1	100	86.346	ENSOANG00000002862	SMARCA1	94	86.090	Ornithorhynchus_anatinus
ENSLBEG00000013295	SMARCA1	100	85.082	ENSOCUG00000001047	SMARCA1	88	84.047	Oryctolagus_cuniculus
ENSLBEG00000013295	SMARCA1	100	97.595	ENSORLG00000021998	smarca5	94	96.228	Oryzias_latipes
ENSLBEG00000013295	SMARCA1	100	97.595	ENSORLG00020017679	smarca5	94	96.224	Oryzias_latipes_hni
ENSLBEG00000013295	SMARCA1	100	97.595	ENSORLG00015017210	smarca5	94	96.323	Oryzias_latipes_hsok
ENSLBEG00000013295	SMARCA1	100	97.342	ENSOMEG00000000086	smarca5	94	95.706	Oryzias_melastigma
ENSLBEG00000013295	SMARCA1	100	83.811	ENSOGAG00000004399	SMARCA1	89	83.191	Otolemur_garnettii
ENSLBEG00000013295	SMARCA1	100	84.703	ENSOARG00000014638	SMARCA1	94	84.130	Ovis_aries
ENSLBEG00000013295	SMARCA1	100	84.829	ENSPPAG00000034647	SMARCA1	88	83.888	Pan_paniscus
ENSLBEG00000013295	SMARCA1	100	85.082	ENSPPRG00000008929	SMARCA1	88	83.996	Panthera_pardus
ENSLBEG00000013295	SMARCA1	100	82.797	ENSPTIG00000000915	SMARCA1	91	82.068	Panthera_tigris_altaica
ENSLBEG00000013295	SMARCA1	100	84.829	ENSPTRG00000049876	SMARCA1	89	83.888	Pan_troglodytes
ENSLBEG00000013295	SMARCA1	100	84.829	ENSPANG00000003871	SMARCA1	88	83.888	Papio_anubis
ENSLBEG00000013295	SMARCA1	100	84.363	ENSPKIG00000013411	smarca1	95	81.303	Paramormyrops_kingsleyae
ENSLBEG00000013295	SMARCA1	100	85.714	ENSPSIG00000010101	SMARCA1	94	85.542	Pelodiscus_sinensis
ENSLBEG00000013295	SMARCA1	100	84.197	ENSPEMG00000017503	Smarca1	89	82.585	Peromyscus_maniculatus_bairdii
ENSLBEG00000013295	SMARCA1	100	86.473	ENSPCIG00000015460	SMARCA1	92	85.484	Phascolarctos_cinereus
ENSLBEG00000013295	SMARCA1	100	97.342	ENSPFOG00000007649	smarca5	94	95.701	Poecilia_formosa
ENSLBEG00000013295	SMARCA1	100	97.342	ENSPLAG00000003363	smarca5	94	95.701	Poecilia_latipinna
ENSLBEG00000013295	SMARCA1	100	97.342	ENSPMEG00000019849	smarca5	94	95.803	Poecilia_mexicana
ENSLBEG00000013295	SMARCA1	100	97.342	ENSPREG00000023250	smarca5	94	95.701	Poecilia_reticulata
ENSLBEG00000013295	SMARCA1	100	81.290	ENSPPYG00000020703	SMARCA1	88	80.881	Pongo_abelii
ENSLBEG00000013295	SMARCA1	77	74.548	ENSPCOG00000020722	SMARCA1	93	79.822	Propithecus_coquereli
ENSLBEG00000013295	SMARCA1	94	83.201	ENSPVAG00000003805	SMARCA1	84	83.243	Pteropus_vampyrus
ENSLBEG00000013295	SMARCA1	61	95.982	ENSPNYG00000012299	smarca5	92	96.330	Pundamilia_nyererei
ENSLBEG00000013295	SMARCA1	100	84.197	ENSRNOG00000003762	Smarca1	88	82.922	Rattus_norvegicus
ENSLBEG00000013295	SMARCA1	100	84.829	ENSRROG00000034167	SMARCA1	88	83.996	Rhinopithecus_roxellana
ENSLBEG00000013295	SMARCA1	100	84.829	ENSSBOG00000020641	SMARCA1	94	84.348	Saimiri_boliviensis_boliviensis
ENSLBEG00000013295	SMARCA1	100	82.576	ENSSHAG00000013518	SMARCA1	93	81.400	Sarcophilus_harrisii
ENSLBEG00000013295	SMARCA1	100	94.177	ENSSFOG00015016794	smarca5	94	93.092	Scleropages_formosus
ENSLBEG00000013295	SMARCA1	100	86.129	ENSSFOG00015009043	smarca1	92	84.690	Scleropages_formosus
ENSLBEG00000013295	SMARCA1	100	98.481	ENSSMAG00000004801	smarca5	94	96.626	Scophthalmus_maximus
ENSLBEG00000013295	SMARCA1	100	97.975	ENSSDUG00000020690	smarca5	94	95.902	Seriola_dumerili
ENSLBEG00000013295	SMARCA1	100	97.975	ENSSLDG00000025190	smarca5	94	95.902	Seriola_lalandi_dorsalis
ENSLBEG00000013295	SMARCA1	90	84.577	ENSSARG00000000842	SMARCA1	79	84.342	Sorex_araneus
ENSLBEG00000013295	SMARCA1	100	85.335	ENSSPUG00000000590	SMARCA1	92	83.070	Sphenodon_punctatus
ENSLBEG00000013295	SMARCA1	100	98.481	ENSSPAG00000002894	smarca5	94	96.728	Stegastes_partitus
ENSLBEG00000013295	SMARCA1	100	84.829	ENSSSCG00000012649	SMARCA1	90	83.673	Sus_scrofa
ENSLBEG00000013295	SMARCA1	100	85.588	ENSTGUG00000003899	-	94	84.832	Taeniopygia_guttata
ENSLBEG00000013295	SMARCA1	100	96.962	ENSTRUG00000014094	smarca5	94	95.189	Takifugu_rubripes
ENSLBEG00000013295	SMARCA1	100	97.468	ENSTNIG00000017717	smarca5	91	94.538	Tetraodon_nigroviridis
ENSLBEG00000013295	SMARCA1	100	83.686	ENSTBEG00000014973	SMARCA1	87	82.468	Tupaia_belangeri
ENSLBEG00000013295	SMARCA1	100	79.701	ENSTTRG00000006168	SMARCA1	95	78.367	Tursiops_truncatus
ENSLBEG00000013295	SMARCA1	100	84.956	ENSUAMG00000020201	SMARCA1	88	83.781	Ursus_americanus
ENSLBEG00000013295	SMARCA1	100	80.531	ENSUMAG00000004073	SMARCA1	98	83.693	Ursus_maritimus
ENSLBEG00000013295	SMARCA1	76	87.368	ENSVPAG00000010492	-	75	87.732	Vicugna_pacos
ENSLBEG00000013295	SMARCA1	100	85.082	ENSVVUG00000008878	SMARCA1	96	84.565	Vulpes_vulpes
ENSLBEG00000013295	SMARCA1	100	85.624	ENSXETG00000001526	smarca1	93	84.871	Xenopus_tropicalis
ENSLBEG00000013295	SMARCA1	100	97.468	ENSXCOG00000011170	smarca5	94	96.211	Xiphophorus_couchianus
ENSLBEG00000013295	SMARCA1	100	97.468	ENSXMAG00000009678	smarca5	94	97.032	Xiphophorus_maculatus