EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSLBEG00000013563 (Gene tree)
Gene ID: 109998327
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Labrus_bergylta
Status: putative
Strand: Minus strand
Length: 167081 bases
Position: chrFKLU01000012.1:372975-540055
Accession: 109998327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSLBEP00000017964	TUDOR	PF00567.24	1.8e-26	1	1
ENSLBEP00000017770	TUDOR	PF00567.24	1.9e-26	1	1
ENSLBEP00000017877	TUDOR	PF00567.24	2.2e-26	1	1
ENSLBEP00000017917	TUDOR	PF00567.24	1.7e-20	1	1
ENSLBEP00000017917	SNase	PF00565.17	1.3e-65	1	4
ENSLBEP00000017917	SNase	PF00565.17	1.3e-65	2	4
ENSLBEP00000017917	SNase	PF00565.17	1.3e-65	3	4
ENSLBEP00000017917	SNase	PF00565.17	1.3e-65	4	4
ENSLBEP00000017770	SNase	PF00565.17	1.9e-65	1	4
ENSLBEP00000017770	SNase	PF00565.17	1.9e-65	2	4
ENSLBEP00000017770	SNase	PF00565.17	1.9e-65	3	4
ENSLBEP00000017770	SNase	PF00565.17	1.9e-65	4	4
ENSLBEP00000017877	SNase	PF00565.17	6.4e-60	1	4
ENSLBEP00000017877	SNase	PF00565.17	6.4e-60	2	4
ENSLBEP00000017877	SNase	PF00565.17	6.4e-60	3	4
ENSLBEP00000017877	SNase	PF00565.17	6.4e-60	4	4
ENSLBEP00000017964	SNase	PF00565.17	1.9e-54	1	3
ENSLBEP00000017964	SNase	PF00565.17	1.9e-54	2	3
ENSLBEP00000017964	SNase	PF00565.17	1.9e-54	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSLBET00000018964	-	5052	-	ENSLBEP00000017964	848 (aa)	-	-
ENSLBET00000018765	-	5241	XM_020653121	ENSLBEP00000017770	911 (aa)	XP_020508777	UPI0009B305F7
ENSLBET00000018917	-	5127	-	ENSLBEP00000017917	873 (aa)	-	-
ENSLBET00000018876	-	5196	-	ENSLBEP00000017877	896 (aa)	-	-

Gene Model

Click here to download ENSLBEG00000013563's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSLBEG00000013563's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSLBEG00000013563	snd1	99	83.537	ENSG00000197157	SND1	100	84.899	Homo_sapiens
ENSLBEG00000013563	snd1	100	94.621	ENSAPOG00000017599	snd1	100	95.966	Acanthochromis_polyacanthus
ENSLBEG00000013563	snd1	100	82.385	ENSAMEG00000004664	SND1	94	83.914	Ailuropoda_melanoleuca
ENSLBEG00000013563	snd1	100	90.889	ENSACIG00000003551	snd1	100	90.889	Amphilophus_citrinellus
ENSLBEG00000013563	snd1	100	94.841	ENSAOCG00000014166	snd1	100	95.798	Amphiprion_ocellaris
ENSLBEG00000013563	snd1	100	94.621	ENSAPEG00000007067	snd1	100	95.630	Amphiprion_percula
ENSLBEG00000013563	snd1	98	93.501	ENSATEG00000018475	snd1	89	95.966	Anabas_testudineus
ENSLBEG00000013563	snd1	99	83.426	ENSANAG00000034463	SND1	99	86.316	Aotus_nancymaae
ENSLBEG00000013563	snd1	100	93.304	ENSACLG00000022897	snd1	100	93.304	Astatotilapia_calliptera
ENSLBEG00000013563	snd1	99	90.110	ENSAMXG00000016318	snd1	99	91.582	Astyanax_mexicanus
ENSLBEG00000013563	snd1	99	83.648	ENSBTAG00000010692	SND1	100	85.235	Bos_taurus
ENSLBEG00000013563	snd1	99	50.331	WBGene00006626	tsn-1	99	50.331	Caenorhabditis_elegans
ENSLBEG00000013563	snd1	99	83.204	ENSCJAG00000017668	SND1	100	84.564	Callithrix_jacchus
ENSLBEG00000013563	snd1	100	82.675	ENSCAFG00000001700	SND1	100	84.732	Canis_familiaris
ENSLBEG00000013563	snd1	100	82.675	ENSCAFG00020021639	SND1	100	84.732	Canis_lupus_dingo
ENSLBEG00000013563	snd1	99	83.426	ENSCHIG00000023390	SND1	100	84.899	Capra_hircus
ENSLBEG00000013563	snd1	73	86.316	ENSTSYG00000004979	SND1	96	86.316	Carlito_syrichta
ENSLBEG00000013563	snd1	99	72.039	ENSCAPG00000010677	SND1	99	72.039	Cavia_aperea
ENSLBEG00000013563	snd1	99	83.315	ENSCPOG00000006251	SND1	100	85.235	Cavia_porcellus
ENSLBEG00000013563	snd1	99	83.426	ENSCCAG00000036847	SND1	100	84.899	Cebus_capucinus
ENSLBEG00000013563	snd1	99	83.760	ENSCATG00000035214	SND1	99	86.491	Cercocebus_atys
ENSLBEG00000013563	snd1	99	83.537	ENSCLAG00000011796	SND1	100	85.067	Chinchilla_lanigera
ENSLBEG00000013563	snd1	99	83.760	ENSCSAG00000010182	SND1	100	85.067	Chlorocebus_sabaeus
ENSLBEG00000013563	snd1	77	80.952	ENSCHOG00000002218	SND1	81	80.952	Choloepus_hoffmanni
ENSLBEG00000013563	snd1	100	85.714	ENSCPBG00000018094	SND1	100	85.714	Chrysemys_picta_bellii
ENSLBEG00000013563	snd1	98	56.146	ENSCING00000000524	-	99	55.375	Ciona_intestinalis
ENSLBEG00000013563	snd1	99	56.987	ENSCSAVG00000008807	-	99	56.783	Ciona_savignyi
ENSLBEG00000013563	snd1	99	83.760	ENSCANG00000035119	SND1	100	85.067	Colobus_angolensis_palliatus
ENSLBEG00000013563	snd1	99	82.981	ENSCGRG00001022514	Snd1	100	84.732	Cricetulus_griseus_chok1gshd
ENSLBEG00000013563	snd1	97	83.070	ENSCGRG00000012277	Snd1	99	85.965	Cricetulus_griseus_crigri
ENSLBEG00000013563	snd1	100	93.304	ENSCSEG00000008661	snd1	100	93.304	Cynoglossus_semilaevis
ENSLBEG00000013563	snd1	100	92.975	ENSCVAG00000010316	snd1	100	95.487	Cyprinodon_variegatus
ENSLBEG00000013563	snd1	100	88.938	ENSDARG00000006766	snd1	99	90.300	Danio_rerio
ENSLBEG00000013563	snd1	97	81.440	ENSDNOG00000006795	SND1	100	83.246	Dasypus_novemcinctus
ENSLBEG00000013563	snd1	99	83.204	ENSDORG00000000336	Snd1	100	84.732	Dipodomys_ordii
ENSLBEG00000013563	snd1	98	49.404	FBgn0035121	Tudor-SN	99	51.466	Drosophila_melanogaster
ENSLBEG00000013563	snd1	90	90.476	ENSETEG00000000375	SND1	91	90.476	Echinops_telfairi
ENSLBEG00000013563	snd1	62	67.568	ENSEBUG00000014201	-	84	77.717	Eptatretus_burgeri
ENSLBEG00000013563	snd1	99	82.166	ENSEASG00005008513	SND1	100	84.732	Equus_asinus_asinus
ENSLBEG00000013563	snd1	99	83.315	ENSECAG00000011451	SND1	100	84.732	Equus_caballus
ENSLBEG00000013563	snd1	100	83.697	ENSEEUG00000014737	SND1	93	83.697	Erinaceus_europaeus
ENSLBEG00000013563	snd1	99	89.572	ENSELUG00000001805	snd1	96	91.107	Esox_lucius
ENSLBEG00000013563	snd1	100	82.566	ENSFCAG00000008289	SND1	100	84.899	Felis_catus
ENSLBEG00000013563	snd1	98	83.445	ENSFDAG00000015881	SND1	100	84.732	Fukomys_damarensis
ENSLBEG00000013563	snd1	100	90.977	ENSFHEG00000004093	snd1	99	92.800	Fundulus_heteroclitus
ENSLBEG00000013563	snd1	75	84.181	ENSGMOG00000018932	snd1	66	84.181	Gadus_morhua
ENSLBEG00000013563	snd1	100	94.072	ENSGAFG00000008421	snd1	100	94.072	Gambusia_affinis
ENSLBEG00000013563	snd1	100	61.346	ENSGACG00000019793	snd1	100	83.871	Gasterosteus_aculeatus
ENSLBEG00000013563	snd1	99	83.760	ENSGGOG00000009614	SND1	99	86.491	Gorilla_gorilla
ENSLBEG00000013563	snd1	100	93.194	ENSHBUG00000019135	snd1	100	93.194	Haplochromis_burtoni
ENSLBEG00000013563	snd1	99	83.315	ENSHGLG00000003618	SND1	100	84.899	Heterocephalus_glaber_female
ENSLBEG00000013563	snd1	99	82.983	ENSHGLG00100012449	SND1	99	85.569	Heterocephalus_glaber_male
ENSLBEG00000013563	snd1	100	92.975	ENSHCOG00000005266	snd1	100	94.958	Hippocampus_comes
ENSLBEG00000013563	snd1	99	87.925	ENSIPUG00000013279	snd1	99	90.000	Ictalurus_punctatus
ENSLBEG00000013563	snd1	99	83.426	ENSSTOG00000002140	SND1	100	85.067	Ictidomys_tridecemlineatus
ENSLBEG00000013563	snd1	99	83.315	ENSJJAG00000009561	Snd1	100	84.732	Jaculus_jaculus
ENSLBEG00000013563	snd1	100	93.963	ENSKMAG00000016997	snd1	100	95.462	Kryptolebias_marmoratus
ENSLBEG00000013563	snd1	99	87.982	ENSLOCG00000015537	snd1	99	89.386	Lepisosteus_oculatus
ENSLBEG00000013563	snd1	100	83.004	ENSLAFG00000009696	SND1	100	85.067	Loxodonta_africana
ENSLBEG00000013563	snd1	99	83.760	ENSMFAG00000038114	SND1	99	86.491	Macaca_fascicularis
ENSLBEG00000013563	snd1	99	83.760	ENSMMUG00000015432	SND1	100	85.067	Macaca_mulatta
ENSLBEG00000013563	snd1	99	83.760	ENSMNEG00000039808	SND1	100	86.515	Macaca_nemestrina
ENSLBEG00000013563	snd1	99	83.648	ENSMLEG00000029040	SND1	100	86.515	Mandrillus_leucophaeus
ENSLBEG00000013563	snd1	100	92.865	ENSMAMG00000011739	snd1	100	92.865	Mastacembelus_armatus
ENSLBEG00000013563	snd1	100	93.304	ENSMZEG00005005681	snd1	100	93.304	Maylandia_zebra
ENSLBEG00000013563	snd1	99	83.648	ENSMICG00000000097	SND1	100	85.067	Microcebus_murinus
ENSLBEG00000013563	snd1	99	83.537	ENSMOCG00000005040	Snd1	100	84.899	Microtus_ochrogaster
ENSLBEG00000013563	snd1	100	94.512	ENSMMOG00000001795	snd1	100	94.512	Mola_mola
ENSLBEG00000013563	snd1	99	82.647	ENSMODG00000015182	SND1	100	83.893	Monodelphis_domestica
ENSLBEG00000013563	snd1	100	93.963	ENSMALG00000012071	snd1	100	93.963	Monopterus_albus
ENSLBEG00000013563	snd1	98	83.221	MGP_CAROLIEiJ_G0028159	Snd1	100	84.396	Mus_caroli
ENSLBEG00000013563	snd1	98	82.998	ENSMUSG00000001424	Snd1	100	84.060	Mus_musculus
ENSLBEG00000013563	snd1	98	83.221	MGP_PahariEiJ_G0021917	Snd1	100	84.396	Mus_pahari
ENSLBEG00000013563	snd1	98	83.221	MGP_SPRETEiJ_G0029159	Snd1	100	84.396	Mus_spretus
ENSLBEG00000013563	snd1	100	82.456	ENSMPUG00000006545	SND1	100	84.732	Mustela_putorius_furo
ENSLBEG00000013563	snd1	97	86.189	ENSMLUG00000017130	SND1	99	86.189	Myotis_lucifugus
ENSLBEG00000013563	snd1	99	83.204	ENSNGAG00000011186	Snd1	100	84.899	Nannospalax_galili
ENSLBEG00000013563	snd1	100	93.085	ENSNBRG00000006681	snd1	100	93.085	Neolamprologus_brichardi
ENSLBEG00000013563	snd1	100	83.004	ENSNLEG00000012263	SND1	100	86.515	Nomascus_leucogenys
ENSLBEG00000013563	snd1	91	90.476	ENSOPRG00000013405	SND1	91	90.476	Ochotona_princeps
ENSLBEG00000013563	snd1	99	83.537	ENSODEG00000011502	SND1	100	85.235	Octodon_degus
ENSLBEG00000013563	snd1	100	93.304	ENSONIG00000011481	snd1	97	93.304	Oreochromis_niloticus
ENSLBEG00000013563	snd1	98	82.584	ENSOANG00000000817	SND1	99	84.041	Ornithorhynchus_anatinus
ENSLBEG00000013563	snd1	100	82.018	ENSOCUG00000001620	SND1	100	84.396	Oryctolagus_cuniculus
ENSLBEG00000013563	snd1	100	93.194	ENSORLG00000015201	snd1	100	93.194	Oryzias_latipes
ENSLBEG00000013563	snd1	100	93.414	ENSORLG00020013991	snd1	99	95.000	Oryzias_latipes_hni
ENSLBEG00000013563	snd1	100	93.414	ENSORLG00015012436	snd1	100	93.414	Oryzias_latipes_hsok
ENSLBEG00000013563	snd1	100	93.743	ENSOMEG00000006406	snd1	100	94.622	Oryzias_melastigma
ENSLBEG00000013563	snd1	99	83.574	ENSOGAG00000013356	SND1	94	84.615	Otolemur_garnettii
ENSLBEG00000013563	snd1	97	81.172	ENSOARG00000002149	SND1	100	85.764	Ovis_aries
ENSLBEG00000013563	snd1	99	83.648	ENSPPAG00000042947	SND1	99	86.491	Pan_paniscus
ENSLBEG00000013563	snd1	100	82.566	ENSPPRG00000004494	SND1	100	84.899	Panthera_pardus
ENSLBEG00000013563	snd1	100	82.456	ENSPTIG00000014214	SND1	100	84.899	Panthera_tigris_altaica
ENSLBEG00000013563	snd1	99	83.648	ENSPTRG00000023911	SND1	99	86.491	Pan_troglodytes
ENSLBEG00000013563	snd1	97	83.860	ENSPANG00000011997	SND1	99	86.491	Papio_anubis
ENSLBEG00000013563	snd1	98	86.726	ENSPKIG00000023494	snd1	99	89.185	Paramormyrops_kingsleyae
ENSLBEG00000013563	snd1	93	91.986	ENSPMGG00000003629	snd1	100	94.224	Periophthalmus_magnuspinnatus
ENSLBEG00000013563	snd1	99	83.315	ENSPEMG00000010240	Snd1	100	84.899	Peromyscus_maniculatus_bairdii
ENSLBEG00000013563	snd1	97	73.476	ENSPMAG00000007915	-	99	79.196	Petromyzon_marinus
ENSLBEG00000013563	snd1	99	83.092	ENSPCIG00000011561	SND1	100	84.564	Phascolarctos_cinereus
ENSLBEG00000013563	snd1	100	93.743	ENSPFOG00000001557	snd1	100	93.743	Poecilia_formosa
ENSLBEG00000013563	snd1	100	93.963	ENSPLAG00000018459	snd1	97	93.963	Poecilia_latipinna
ENSLBEG00000013563	snd1	100	93.963	ENSPMEG00000006803	snd1	100	93.963	Poecilia_mexicana
ENSLBEG00000013563	snd1	100	93.524	ENSPREG00000002189	snd1	100	93.524	Poecilia_reticulata
ENSLBEG00000013563	snd1	91	88.889	ENSPPYG00000017972	SND1	100	88.889	Pongo_abelii
ENSLBEG00000013563	snd1	100	72.697	ENSPCAG00000011305	SND1	100	75.556	Procavia_capensis
ENSLBEG00000013563	snd1	99	83.760	ENSPCOG00000026791	SND1	100	86.515	Propithecus_coquereli
ENSLBEG00000013563	snd1	99	81.313	ENSPVAG00000013945	SND1	100	80.592	Pteropus_vampyrus
ENSLBEG00000013563	snd1	100	93.194	ENSPNYG00000000932	snd1	100	93.194	Pundamilia_nyererei
ENSLBEG00000013563	snd1	99	89.560	ENSPNAG00000001206	snd1	99	91.246	Pygocentrus_nattereri
ENSLBEG00000013563	snd1	98	82.998	ENSRNOG00000031173	Snd1	100	84.939	Rattus_norvegicus
ENSLBEG00000013563	snd1	73	86.891	ENSRBIG00000027782	-	93	86.932	Rhinopithecus_bieti
ENSLBEG00000013563	snd1	99	83.760	ENSRROG00000033020	SND1	100	85.067	Rhinopithecus_roxellana
ENSLBEG00000013563	snd1	99	83.315	ENSSBOG00000032461	SND1	99	86.316	Saimiri_boliviensis_boliviensis
ENSLBEG00000013563	snd1	98	79.888	ENSSHAG00000015359	SND1	100	81.533	Sarcophilus_harrisii
ENSLBEG00000013563	snd1	98	87.140	ENSSFOG00015001103	snd1	99	89.369	Scleropages_formosus
ENSLBEG00000013563	snd1	100	94.841	ENSSMAG00000001932	snd1	95	95.630	Scophthalmus_maximus
ENSLBEG00000013563	snd1	100	94.841	ENSSDUG00000002699	snd1	94	96.471	Seriola_dumerili
ENSLBEG00000013563	snd1	100	87.377	ENSSLDG00000001950	snd1	100	87.377	Seriola_lalandi_dorsalis
ENSLBEG00000013563	snd1	88	78.792	ENSSARG00000004877	SND1	92	79.304	Sorex_araneus
ENSLBEG00000013563	snd1	75	77.946	ENSSPUG00000017586	SND1	96	79.896	Sphenodon_punctatus
ENSLBEG00000013563	snd1	76	95.770	ENSSPAG00000021398	snd1	99	95.798	Stegastes_partitus
ENSLBEG00000013563	snd1	99	83.315	ENSSSCG00000016590	SND1	100	84.732	Sus_scrofa
ENSLBEG00000013563	snd1	97	97.222	ENSTRUG00000014067	snd1	100	91.548	Takifugu_rubripes
ENSLBEG00000013563	snd1	100	91.877	ENSTNIG00000011019	snd1	100	92.773	Tetraodon_nigroviridis
ENSLBEG00000013563	snd1	95	77.882	ENSTBEG00000003999	SND1	100	77.882	Tupaia_belangeri
ENSLBEG00000013563	snd1	99	79.422	ENSTTRG00000006059	SND1	100	79.530	Tursiops_truncatus
ENSLBEG00000013563	snd1	87	82.700	ENSUAMG00000005604	-	93	89.524	Ursus_americanus
ENSLBEG00000013563	snd1	72	76.240	ENSUAMG00000002820	-	89	76.240	Ursus_americanus
ENSLBEG00000013563	snd1	100	82.456	ENSUMAG00000005960	SND1	100	84.732	Ursus_maritimus
ENSLBEG00000013563	snd1	76	95.652	ENSVPAG00000008302	SND1	70	95.652	Vicugna_pacos
ENSLBEG00000013563	snd1	100	82.566	ENSVVUG00000007226	SND1	100	84.564	Vulpes_vulpes
ENSLBEG00000013563	snd1	97	84.912	ENSXETG00000023043	snd1	100	84.912	Xenopus_tropicalis
ENSLBEG00000013563	snd1	93	91.737	ENSXCOG00000013629	snd1	99	91.330	Xiphophorus_couchianus
ENSLBEG00000013563	snd1	100	94.512	ENSXMAG00000011469	snd1	100	94.512	Xiphophorus_maculatus